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PpGDB Downloads

PpGDB encompasses primary sequence data, including the most current genomic sequence, EST and cDNA sequences from GenBank, EST assemblies (PUTs) from PlantGDB, and microarray probes. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The links below, mirrored on our FTP site, provide bzip2 archives of primary sequence used in the current version of PpGDB, as well as the MySQL tables that comprise the spliced alignment data and coordinates for all aligned sequences. For more information on the current datasets, their sources, and alignment methods, go to our Data & Methods page.

The moss genome assembly is still being refined and completed. PpGDB attempts to remain synchronized with the most recent release of the genome sequence or assembly (if any) and annotations. If you have any questions or comments about this genome browser, please make use of our feedback form.

NameLast modified dateFile Size
ATpep.bz2 Feb 18 2008 7.64 MB
OSpep.bz2 Feb 18 2008 13.5 MB
PPGDB163.sql.bz2 Mar 25 2011 261.11 MB
PPbac163.bz2 Feb 18 2008 121.13 MB
PPcdna163.bz2 Feb 18 2008 222.11 KB
PPcdna183.bz2 May 17 2011 279.82 KB
PPest163.bz2 Feb 18 2008 57.04 MB
PPest183.bz2 May 17 2011 67.18 MB
PPput157.bz2 Feb 18 2008 8.07 MB
PPput169a.bz2 May 17 2011 13.04 MB
Ppatens_152.fa.gz May 12 2011 131.02 MB
Ppatens_152_RM.fa.gz May 12 2011 96.29 MB
Ppatens_152_annotation_info.txt.gz May 12 2011 625.27 KB
Ppatens_152_cds.fa.bz2 Mar 23 2011 10.91 MB
Ppatens_152_cds.fa.gz May 12 2011 10.82 MB
Ppatens_152_gene.gff3.bz2 Mar 23 2011 2.94 MB
Ppatens_152_gene_exons.gff3.gz May 12 2011 5.4 MB
Ppatens_152_peptide.fa.gz Mar 22 2011 6.97 MB
Ppatens_152_transcript.fa.gz Mar 22 2011 14.01 MB

NOTE: For convenient batch download of PpGDB data files, visit our FTP site

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