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BdGDB Downloads

BdGDB encompasses primary sequence data, including the most current genomic sequence, EST and cDNA sequences from GenBank, EST assemblies (PUTs) from PlantGDB, and microarray probes. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The links below, mirrored on our FTP site, provide bzip2 archives of primary sequence used in the current version of BdGDB, as well as the MySQL tables that comprise the spliced alignment data and coordinates for all aligned sequences. For more information on the current datasets, their sources, and alignment methods, go to our Data & Methods page.

The Brachypodium genome assembly is still being refined and completed. BdGDB attempts to remain synchronized with the most recent release of the genome sequence or assembly (if any) and annotations. If you have any questions or comments about this genome browser, please make use of our feedback form.

NameLast modified dateFile Size
0README Feb 14 2012 550 bytes
BDGDB170.sql.bz2 Mar 30 2010 78.15 MB
BDscaffolds.bz2 Oct 27 2008 73.79 MB
Bdistachyon_192_annotation_info.txt.bz2 Feb 13 2012 663.76 KB
Bdistachyon_192_cds.fa.bz2 Feb 13 2012 10.59 MB
Bdistachyon_192_gene.gff3.bz2 Feb 13 2012 3.1 MB
Bdistachyon_192_peptide.fa.bz2 Feb 13 2012 6.83 MB
Bdistachyon_192_transcript.fa.bz2 Feb 13 2012 13.1 MB
Bradi_1.0.cds.fa.bz2 Dec 21 2010 10.09 MB
Bradi_1.0.gff2.bz2 Dec 21 2010 2.32 MB
Bradi_1.0.pep.fa.bz2 May 1 2009 6.6 MB

NOTE: For convenient batch download of BdGDB data files, visit our FTP site

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