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AtGDB Downloads

AtGDB encompasses primary sequence data, including the most current genomic sequence, EST and cDNA sequences from GenBank, EST assemblies (PUTs) from PlantGDB, and microarray probes. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The links below, mirrored on our FTP site, provide bzip2 archives of primary sequence used in the current version of AtGDB, as well as the MySQL tables that comprise the spliced alignment data and coordinates for all aligned sequences. For more information on the current datasets, their sources, and alignment methods, go to our Data & Methods page.

The Arabidopsis genome assembly is still being refined and completed. AtGDB attempts to remain synchronized with the most recent release of the genome sequence or assembly (if any) and annotations. If you have any questions or comments about this genome browser, please make use of our feedback form.

NameLast modified dateFile Size
0README_error Sep 17 2010 1.91 KB
ATcdna171 Sep 30 2009 104.51 MB
ATest171 Sep 30 2009 582.52 MB
ATgenomeTAIR9.171 Sep 30 2009 115.57 MB
ATpepTAIR10 Dec 15 2010 19.11 MB
ATpepTAIR9 Sep 30 2009 17.33 MB
ATprobe Sep 30 2009 10.73 MB
ATput169a Sep 30 2009 212.88 MB
ATtranscriptTAIR10 Dec 15 2010 68.38 MB
ATtranscriptTAIR9 Sep 30 2009 63.72 MB
AtGDB171.sql.bz2 Sep 25 2010 318.35 MB
AtGDB171_error.sql.bz2 Mar 22 2010 337.23 MB
AtGDB171_error2.sql.bz2 Sep 17 2010 333.53 MB
OSpepV6.1 Sep 30 2009 35.56 MB
mytmp Apr 5 2012 1.13 KB
/previous_version directory

NOTE: For convenient batch download of AtGDB data files, visit our FTP site

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