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VcGDB Annotated Protein Alignments

This table organizes splice-aligned proteins and their functional annotations, in linear order according to their start/end coordinates on a genomic segment. These alignments do not necessarily represent functional genes, and some genes will lack protein alignments. The search examples demonstrate how to search by Scaffold/BAC ID, Protein ID, or keyword. Click a Scaffold/BAC ID, Protein ID, Description, or Date to filter results according to that value. Click the GDB icon in column 1 to open a new window displaying the corresponding genomic region in Genome Context View. For more information, visit PlantGDB Help.

           
(search examples: 1; Cre13.g570000.t1.1; Triacylglycerol Lip*) [ Export search result ] [ << Prev ][ Next >> ] (Showing 1 - 100 of 2618 records / 76 BACs/Scaffolds)
GDB Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
GDB Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
Genome Context View VcScaffold1 Cre13.g588050.t1.1 32014 32980 PF00076 0000-00-00
Genome Context View VcScaffold1 Cre13.g587450.t1.1 35294 40111 PF01812 PTHR13017 KOG4410 6.3.3.2 K01934 AT1G76730.1 NagB/RpiA/CoA transferase-like superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre13.g587050.t1.1 84130 87956 PF03463,PF03464,PF03465 PTHR10113 KOG0688 K03265 AT3G26618.1 ERF1-3 eukaryotic release factor 1-3 0000-00-00
Genome Context View VcScaffold1 Cre13.g585850.t1.1 332775 333962 PF04101 PTHR12867 KOG3349 2.4.1.141 K07432 AT4G16710.1 glycosyltransferase family protein 28 0000-00-00
Genome Context View VcScaffold1 Cre13.g585150.t1.1 391161 391898 PF01912 PTHR10784 KOG3185 K03264 AT3G55620.1 emb1624 Translation initiation factor IF6 0000-00-00
Genome Context View VcScaffold1 Cre13.g584400.t1.1 563111 568495 PF02370,PF04508 0000-00-00
Genome Context View VcScaffold1 Cre13.g581650.t1.1 692576 693064 PF00542 PTHR11809 KOG1715 K02935 AT3G27830.1 RPL12,RPL12-A ribosomal protein L12-A 0000-00-00
Genome Context View VcScaffold1 Cre13.g581600.t1.1 694577 697780 ID=PAC:19870526;Name=Cre13.g581600.t1.1;pacid=19870526;longest=1;Parent=Cre13.g581600 0000-00-00
Genome Context View VcScaffold1 Cre13.g581450.t1.1 712545 715815 PF10602,PF01399 PTHR14145 KOG0687 K03037 AT4G24820.1 26S proteasome, regulatory subunit Rpn7;Proteasome 0000-00-00
Genome Context View VcScaffold1 Cre13.g579950.t1.1 806038 809051 PF07719,PF00515 PTHR12760 KOG3060 AT5G28220.1 Protein prenylyltransferase superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre13.g581850.t1.1 867703 873913 PF03109 PTHR10566 KOG1235 AT4G31390.1 Protein kinase superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre13.g582800.t1.1 926310 933700 PTHR10578 0000-00-00
Genome Context View VcScaffold1 Cre13.g578750.t1.1 989831 994728 PF01180 PTHR11938 KOG1799 1.3.1.2 K00207 AT3G17810.1 PYD1 pyrimidine 1 0000-00-00
Genome Context View VcScaffold1 Cre13.g577950.t1.1 1302494 1304399 PF03357 PTHR22761 KOG1655 K12198 AT3G10640.1 VPS60.1 SNF7 family protein 0000-00-00
Genome Context View VcScaffold1 Cre13.g572700.t1.1 1439962 1449851 PF00400 PTHR14920 KOG2247 AT5G13840.1 FZR3 FIZZY-related 3 0000-00-00
Genome Context View VcScaffold1 Cre13.g573400.t1.1 1493213 1493935 ID=PAC:19870726;Name=Cre13.g573400.t1.1;pacid=19870726;longest=1;Parent=Cre13.g573400 0000-00-00
Genome Context View VcScaffold1 Cre06.g295400.t1.1 1712736 1716782 PF00153 PTHR11896 KOG0758 K03454 AT5G46800.1 BOU Mitochondrial substrate carrier family protein 0000-00-00
Genome Context View VcScaffold1 Cre06.g295450.t1.1 1717049 1720980 PF00389,PF02826 PTHR10996 KOG0069 AT1G68010.1 ATHPR1,HPR hydroxypyruvate reductase 0000-00-00
Genome Context View VcScaffold1 Cre06.g296600.t1.1 1752873 1753518 PF00677 PTHR21098 KOG3310 2.5.1.9 K00793 AT2G20690.1 lumazine-binding family protein 0000-00-00
Genome Context View VcScaffold1 Cre06.g298350.t1.1 1805458 1808632 PF02020 PTHR14208 KOG2297 AT5G36230.1 ARM repeat superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre06.g298100.t1.1 1809925 1810517 PF01253 PTHR10388 KOG1770 K03113 AT4G27130.1 Translation initiation factor SUI1 family protein 0000-00-00
Genome Context View VcScaffold1 Cre06.g299300.t1.1 1962166 1965711 PF00091,PF03953 PTHR11588 KOG1374 K10389 AT3G61650.1 TUBG1 gamma-tubulin 0000-00-00
Genome Context View VcScaffold1 Cre13.g569200.t1.1 2007881 2010318 PF02881,PF00448,PF02978 PTHR11564 KOG0780 K03106 AT1G48900.1 Signal recognition particle, SRP54 subunit 0000-00-00
Genome Context View VcScaffold1 Cre13.g568900.t1.1 2011458 2012801 PF00237 PTHR11593 KOG3353 K02880 AT1G27400.1 Ribosomal protein L22p/L17e family protein 0000-00-00
Genome Context View VcScaffold1 Cre13.g568650.t1.1 2049419 2052107 PF01015 PTHR11830 KOG1628 K02984 AT4G34670.1 Ribosomal protein S3Ae 0000-00-00
Genome Context View VcScaffold1 Cre06.g294750.t1.1 2057019 2059762 PF01040 PTHR11048 KOG1381 2.5.1.62 K04040 AT3G51820.1 ATG4,CHLG,G4 UbiA prenyltransferase family protein 0000-00-00
Genome Context View VcScaffold1 Cre06.g294650.t1.1 2079855 2083636 PF00266 PTHR21152 KOG2862 2.6.1.44,2.6.1.45,2.6.1.51 K00830 AT2G13360.1 AGT,AGT1,SGAT alanine:glyoxylate 0000-00-00
Genome Context View VcScaffold1 Cre06.g300800.t1.1 2264823 2265657 PF01016 PTHR15893 KOG4600 AT5G40950.1 RPL27 ribosomal protein large subunit 27 0000-00-00
Genome Context View VcScaffold1 Cre13.g571150.t1.1 2393419 2393679 ID=PAC:19870724;Name=Cre13.g571150.t1.1;pacid=19870724;longest=1;Parent=Cre13.g571150 0000-00-00
Genome Context View VcScaffold1 Cre13.g571650.t1.1 2442243 2442647 PF01194 PTHR23413 KOG3497 K03007 AT1G61700.1 RNA polymerases N / 8 kDa subunit 0000-00-00
Genome Context View VcScaffold1 Cre13.g573800.t1.1 2705736 2710571 PF00485 PTHR10285 KOG4203 2.7.1.48 K00876 AT5G40870.1 ATUK/UPRT1,UK/UPRT1,UKL1 uridine kinase/uracil 0000-00-00
Genome Context View VcScaffold1 Cre28.g776850.t1.1 2719732 2731487 PF08544,PF00575,PF07717 PTHR18934 AT3G26560.1 ATP-dependent RNA helicase, putative 0000-00-00
Genome Context View VcScaffold1 Cre13.g565800.t1.1 2955090 2957297 PF03214 2.4.1.-,5.4.99.- K13379 AT3G02230.1 ATRGP1,RGP1 reversibly glycosylated polypeptide 1 0000-00-00
Genome Context View VcScaffold1 Cre01.g051400.t1.1 3213161 3215100 PF00810 PTHR10585 KOG3106 K10949 AT3G25040.1 ERD2B endoplasmic reticulum retention defective 2B 0000-00-00
Genome Context View VcScaffold1 Cre23.g768350.t1.1 3441921 3444205 PF00400 PTHR11871 KOG1354 K04354 AT1G17720.2 ATB BETA Protein phosphatase 2A, regulatory subunit PR55 0000-00-00
Genome Context View VcScaffold1 AT5G08290.1 3446008 3446436 YLS8; catalytic | chr5:2666043-2666936 FORWARD 0000-00-00
Genome Context View VcScaffold1 Cre01.g054500.t1.1 3497421 3506909 PF05222,PF01262,PF02233 PTHR10160 1.6.1.2 K00323 0000-00-00
Genome Context View VcScaffold1 Cre23.g767000.t1.1 3566577 3567349 PF03931 PTHR20648 KOG3473 K03872 AT5G59140.1 BTB/POZ domain-containing protein 0000-00-00
Genome Context View VcScaffold1 Cre23.g767300.t1.1 3589523 3595012 PF01926,PF02824 PTHR11702 KOG1486 AT1G72660.1 P-loop containing nucleoside triphosphate hydrolases 0000-00-00
Genome Context View VcScaffold1 Cre13.g590800.t1.1 3611446 3612096 PF00125,PF00808 PTHR23430 KOG1756 K11251 AT1G51060.1 HTA10 histone H2A 10 0000-00-00
Genome Context View VcScaffold1 Cre13.g591150.t1.1 3611446 3612096 PF00125,PF00808 PTHR23430 KOG1756 K11251 AT1G51060.1 HTA10 histone H2A 10 0000-00-00
Genome Context View VcScaffold1 Cre06.g264750.t1.1 3611446 3612096 PF00125,PF00808 PTHR23430 KOG1756 K11251 AT1G51060.1 HTA10 histone H2A 10 0000-00-00
Genome Context View VcScaffold1 Cre06.g264950.t1.1 3611446 3612096 PF00125,PF00808 PTHR23430 KOG1756 K11251 AT1G51060.1 HTA10 histone H2A 10 0000-00-00
Genome Context View VcScaffold1 Cre06.g266700.t1.1 3611446 3612096 PF00125,PF00808 PTHR23430 KOG1756 K11251 AT1G51060.1 HTA10 histone H2A 10 0000-00-00
Genome Context View VcScaffold1 Cre06.g265350.t1.1 3611446 3612096 PF00125,PF00808 PTHR23430 KOG1756 K11251 AT1G51060.1 HTA10 histone H2A 10 0000-00-00
Genome Context View VcScaffold1 Cre06.g268050.t1.1 3611446 3612096 PF00125,PF00808 PTHR23430 KOG1756 K11251 AT1G51060.1 HTA10 histone H2A 10 0000-00-00
Genome Context View VcScaffold1 Cre23.g766900.t1.1 3612402 3612927 PF00125 PTHR23428 KOG1744 K11252 AT1G07790.1 HTB1 Histone superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre23.g766400.t1.1 3638272 3652945 PF00400 PTHR12764 KOG1538 AT5G56130.1 AtTEX1,TEX1,THO3 Transducin/WD40 repeat-like superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre23.g766250.t1.1 3740847 3742184 PF00504 PTHR21649 K08913 AT2G05070.1 LHCB2,LHCB2.2 photosystem II light harvesting complex gene 2.2 0000-00-00
Genome Context View VcScaffold1 Cre23.g765700.t1.1 3874903 3879624 PF11930,PF00501 PTHR11968 KOG1175 6.2.1.1 K01895 AT5G36880.2 ACS acetyl-CoA synthetase 0000-00-00
Genome Context View VcScaffold1 Cre06.g296700.t1.1 3933185 3936719 PF04055,PF06968 PTHR22976 0000-00-00
Genome Context View VcScaffold1 Cre01.g053500.t1.1 4116427 4120544 PF00432 PTHR11774 KOG0366 2.5.1.60 K05956 AT3G12070.1 AtRGTB2,RGTB2 RAB geranylgeranyl transferase beta 0000-00-00
Genome Context View VcScaffold1 Cre01.g047550.t1.1 4304011 4305373 PF00071,PF08477 PTHR11708 KOG0094 K07893 AT2G44610.1 ATRAB6A,ATRABH1B,RAB6,RAB6A Ras-related small GTP-binding 0000-00-00
Genome Context View VcScaffold1 Cre01.g047750.t1.1 4328573 4330680 PF01775 PTHR10052 KOG0829 K02882 AT2G34480.1 Ribosomal protein L18ae/LX family protein 0000-00-00
Genome Context View VcScaffold1 Cre01.g047900.t1.1 4340474 4345680 PF00036 PTHR12085 KOG2562 K11583 AT5G18580.1 EMB40,FASS,FASS 2,FS1,GDO,TON2 tonneau 2 (TON2) 0000-00-00
Genome Context View VcScaffold1 Cre01.g049132.t1.1 4404533 4410386 0000-00-00
Genome Context View VcScaffold1 Cre01.g048950.t1.1 4545275 4551383 PF00156,PF00215 KOG1377 2.4.2.10,4.1.1.23 K13421 AT3G54470.1 uridine 5'-monophosphate synthase / UMP 0000-00-00
Genome Context View VcScaffold1 Cre01.g049500.t1.1 4629019 4629641 PF00116 PTHR22888 1.9.3.1 K02261 ATMG00160.1 cytochrome oxidase 2 0000-00-00
Genome Context View VcScaffold1 Cre01.g050850.t1.1 4708084 4713227 PF07646,PF01344,PF00149 PTHR11668 KOG0374 3.1.3.16 K01090 AT2G27210.1 BSL3 BRI1 suppressor 1 (BSU1)-like 0000-00-00
Genome Context View VcScaffold1 Cre01.g050950.t1.1 4719298 4722432 PTHR10617 1.3.1.83 K10960 AT1G74470.1 Pyridine nucleotide-disulphide oxidoreductase family protein 0000-00-00
Genome Context View VcScaffold1 Cre01.g051900.t1.1 4841997 4843556 PF02921,PF00355 PTHR10134 KOG1671 1.10.2.2 K00411 AT5G13440.1 Ubiquinol-cytochrome C reductase iron-sulfur 0000-00-00
Genome Context View VcScaffold1 Cre01.g045550.t1.1 4938944 4941728 PF03151,PF00892 PTHR11132 KOG1441 AT5G46110.4 APE2,TPT Glucose-6-phosphate/phosphate translocator-related 0000-00-00
Genome Context View VcScaffold1 Cre01.g044800.t1.1 4992548 4996590 PF02901,PF01228 0000-00-00
Genome Context View VcScaffold1 Cre01.g043750.t1.1 5091980 5098914 ID=PAC:19865911;Name=Cre01.g043750.t1.1;pacid=19865911;longest=1;Parent=Cre01.g043750 0000-00-00
Genome Context View VcScaffold1 Cre01.g042750.t1.1 5279273 5284777 PF00330,PF00694 PTHR11670 KOG0453 4.2.1.3 K01681 AT4G26970.1 ACO2 aconitase 2 0000-00-00
Genome Context View VcScaffold1 Cre01.g042900.t1.1 5295211 5298600 PF00398,PF08241,PF08242 PTHR11727 KOG0820 2.1.1.183 K14191 AT2G47420.1 Ribosomal RNA adenine dimethylase 0000-00-00
Genome Context View VcScaffold1 Cre01.g042950.t1.1 5352613 5355534 PF05255 PTHR13180 KOG3393 AT1G36980.1 0000-00-00
Genome Context View VcScaffold1 Cre01.g045100.t1.1 5357684 5359375 ID=PAC:19866416;Name=Cre01.g045100.t1.1;pacid=19866416;longest=1;Parent=Cre01.g045100 0000-00-00
Genome Context View VcScaffold1 Cre01.g045350.t1.1 5370446 5373347 PF00560 PTHR13824 AT1G10510.1 emb2004 RNI-like superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre01.g036400.t1.1 5406927 5409720 PF00106 PTHR19410 KOG1205 1.-.-.- K00540 AT3G03330.1 NAD(P)-binding Rossmann-fold superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre01.g038600.t1.1 5678913 5681915 PF11960,PF00487 1.14.19.- K10257 AT3G11170.1 FAD7,FADD fatty acid desaturase 7 0000-00-00
Genome Context View VcScaffold1 Cre01.g038250.t1.1 5713491 5716186 PTHR11999 KOG0629 4.1.1.22 K01590 AT1G43710.1 emb1075 Pyridoxal phosphate (PLP)-dependent transferases 0000-00-00
Genome Context View VcScaffold1 Cre01.g034050.t1.1 5918101 5922273 PF00155 PTHR11751 KOG0257 AT1G77670.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily 0000-00-00
Genome Context View VcScaffold1 Cre01.g035000.t1.1 5985429 5991685 PF00400 PTHR14091 KOG0270 AT4G18905.1 Transducin/WD40 repeat-like superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre01.g034950.t1.1 5994158 6000097 PF00005 PTHR19211 KOG0066 K06184 AT3G54540.1 ATGCN4,GCN4 general control non-repressible 4 0000-00-00
Genome Context View VcScaffold1 Cre01.g040000.t1.1 6205133 6206506 PF00467 PTHR11143 KOG3401 K02898 AT3G49910.1 Translation protein SH3-like family protein 0000-00-00
Genome Context View VcScaffold1 Cre01.g039300.t1.1 6242589 6247026 PF00076,PF00658 PTHR10432 KOG0123 K13126 AT4G34110.1 ATPAB2,PAB2,PABP2 poly(A) binding protein 2 0000-00-00
Genome Context View VcScaffold1 Cre01.g039200.t1.1 6251354 6252518 PTHR11708 0000-00-00
Genome Context View VcScaffold1 Cre01.g037800.t1.1 6304792 6306489 PTHR21148 KOG1672 AT2G18990.1 TXND9 thioredoxin domain-containing protein 9 homolog 0000-00-00
Genome Context View VcScaffold1 Cre01.g039650.t1.1 6307340 6308472 PF01327 PTHR10458 AT5G14660.1 ATDEF2,DEF2,PDF1B peptide deformylase 1B 0000-00-00
Genome Context View VcScaffold1 Cre01.g025450.t1.1 6369727 6372705 PF00612 0000-00-00
Genome Context View VcScaffold1 Cre12.g555150.t1.1 6480637 6481379 ID=PAC:19875080;Name=Cre12.g555150.t1.1;pacid=19875080;longest=1;Parent=Cre12.g555150 0000-00-00
Genome Context View VcScaffold1 Cre06.g267450.t1.1 6554801 6555461 PTHR19266:SF76 0000-00-00
Genome Context View VcScaffold1 AT1G07660.1 6685515 6685826 histone H4 | chr1:2369212-2369523 FORWARD 0000-00-00
Genome Context View VcScaffold1 AT1G07820.1 6685515 6685826 histone H4 | chr1:2421435-2421746 REVERSE 0000-00-00
Genome Context View VcScaffold1 AT2G28740.1 6685515 6685826 HIS4; DNA binding | chr2:12329643-12329954 REVERSE 0000-00-00
Genome Context View VcScaffold1 AT5G59690.1 6685515 6685826 histone H4 | chr5:24051649-24051960 FORWARD 0000-00-00
Genome Context View VcScaffold1 AT5G59970.1 6685515 6685826 histone H4 | chr5:24146352-24146663 REVERSE 0000-00-00
Genome Context View VcScaffold1 AT3G45930.1 6685515 6685826 histone H4 | chr3:16883390-16883701 FORWARD 0000-00-00
Genome Context View VcScaffold1 AT3G53730.1 6685515 6685826 histone H4 | chr3:19912659-19912970 REVERSE 0000-00-00
Genome Context View VcScaffold1 AT3G46320.1 6685515 6685826 histone H4 | chr3:17020043-17020354 REVERSE 0000-00-00
Genome Context View VcScaffold1 Cre17.g708200.t1.1 6685515 6685826 PF00125 PTHR10484 KOG3467 K11254 AT5G59690.1 Histone superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre17.g709100.t1.1 6685515 6685826 PF00125 PTHR10484 KOG3467 K11254 AT5G59690.1 Histone superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre17.g710500.t1.1 6685515 6685826 PF00125 PTHR10484 KOG3467 K11254 AT5G59690.1 Histone superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre17.g714000.t1.1 6685515 6685826 PF00125 PTHR10484 KOG3467 K11254 AT5G59690.1 Histone superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre17.g714600.t1.1 6685515 6685826 PF00125 PTHR10484 KOG3467 K11254 AT5G59690.1 Histone superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre17.g708650.t1.1 6685515 6685826 PF00125 PTHR10484 KOG3467 K11254 AT5G59690.1 Histone superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre17.g713500.t1.1 6685515 6685826 PF00125 PTHR10484 KOG3467 K11254 AT5G59690.1 Histone superfamily protein 0000-00-00
Genome Context View VcScaffold1 Cre16.g650250.t1.1 6685515 6685826 PF00125 PTHR10484 KOG3467 K11254 AT2G28740.1 HIS4 histone H4 0000-00-00
Genome Context View VcScaffold1 Cre13.g570000.t1.1 6685515 6685826 PF00125 PTHR10484 KOG3467 K11254 AT2G28740.1 HIS4 histone H4 0000-00-00

Database lookup time: 0.031700134277344 sec

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