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SmGDB Annotated Protein Alignments

This table organizes splice-aligned proteins and their functional annotations, in linear order according to their start/end coordinates on a genomic segment. These alignments do not necessarily represent functional genes, and some genes will lack protein alignments. The search examples demonstrate how to search by Scaffold/BAC ID, Protein ID, or keyword. Click a Scaffold/BAC ID, Protein ID, Description, or Date to filter results according to that value. Click the GDB icon in column 1 to open a new window displaying the corresponding genomic region in Genome Context View. For more information, visit PlantGDB Help.

           
(search examples: 1; Medtr8g134210.1; Triacylglycerol Lip*) [ Export search result ] [ << Prev ][ Next >> ] (Showing 1 - 100 of 2959 records / 144 BACs/Scaffolds)
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
Genome Context View View with CoGe 0 AT5G16050.1 597969 599426 GRF5 (GENERAL REGULATORY FACTOR 5); ATP binding / protein binding / protein phosphorylated amino acid 2011-05-20
Genome Context View View with CoGe 0 AT3G05530.1 600055 601856 RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding | chr3:1603540-1605993 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT1G09100.1 600067 601856 RPT5B (26S proteasome AAA-ATPase subunit RPT5B); ATPase/ calmodulin binding | chr1:2936675-2939258 REVERSE 2011-05-20
Genome Context View View with CoGe 0 Medtr1g099840.1 600067 601856 AAA ATPase; 26S proteasome subunit P45 chr01_pseudomolecule_IMGAG_V3 20541932-20546355 F EGN_Mt090430 2011-05-20
Genome Context View View with CoGe 0 AT2G24765.1 759437 760429 ARF3 (ADP-RIBOSYLATION FACTOR 3); protein binding | chr2:10562822-10564961 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT1G75780.1 1093565 1095329 TUB1; GTP binding / GTPase/ structural molecule | chr1:28451378-28453602 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT1G20010.1 1093565 1095329 TUB5; structural constituent of cytoskeleton | chr1:6938033-6940481 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT5G12250.1 1093565 1095329 TUB6 (BETA-6 TUBULIN); structural constituent of cytoskeleton | chr5:3961317-3962971 REVERSE 2011-05-20
Genome Context View View with CoGe 0 Medtr3g156450.1 1093565 1095329 Cell division protein FtsZ chr03_pseudomolecule_IMGAG_V3 41031986-41028556 F EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT3G48750.1 1098201 1099371 CDC2 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding / protein kinase 2011-05-20
Genome Context View View with CoGe 0 AC235662_4.1 1098204 1099526 Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT5G58290.1 1145859 1147372 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3); ATPase | chr5:23569155-23571116 FORWARD 2011-05-20
Genome Context View View with CoGe 0 Medtr3g083690.1 1145859 1147389 AAA ATPase; 26S proteasome subunit P45 chr03_pseudomolecule_IMGAG_V3 19726294-19720234 E EGN_Mt090430 2011-05-20
Genome Context View View with CoGe 0 Medtr8g115520.1 1146597 1147015 AAA ATPase, central region chr08_pseudomolecule_IMGAG_V3 25974612-25971106 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT5G06360.1 1371094 1372278 ribosomal protein S8e family protein | chr5:1944835-1946512 FORWARD 2011-05-20
Genome Context View View with CoGe 0 Medtr2g097150.1 1599113 1599678 Eukaryotic translation initiation factor SUI1 chr02_pseudomolecule_IMGAG_V3 22706051-22710070 E EGN_Mt090430 2011-05-20
Genome Context View View with CoGe 0 AT5G15200.1 1819196 1820050 40S ribosomal protein S9 (RPS9B) | chr5:4935124-4936334 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT5G39850.1 1819281 1819990 40S ribosomal protein S9 (RPS9C) | chr5:15950053-15951171 FORWARD 2011-05-20
Genome Context View View with CoGe 0 Medtr4g018880.1 1819284 1820050 Ribosomal protein S4 chr04_pseudomolecule_IMGAG_V3 3729347-3731002 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr3g012920.1 1819284 1820050 Ribosomal protein S4 chr03_pseudomolecule_IMGAG_V3 2289880-2291742 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr3g012940.1 1819284 1820050 Ribosomal protein S4 chr03_pseudomolecule_IMGAG_V3 2297351-2295367 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr3g024710.1 1819284 1820050 Ribosomal protein S4, bacterial and organelle form chr03_pseudomolecule_IMGAG_V3 6292777-6293640 E EGN_Mt090430 2011-05-20
Genome Context View View with CoGe 0 Medtr8g112490.1 1819647 1820050 Ribosomal protein S4 chr08_pseudomolecule_IMGAG_V3 25268278-25267020 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr7g005760.1 2440011 2442730 Protein kinase chr07_pseudomolecule_IMGAG_V3 578680-586289 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT2G24270.1 3159925 3161932 ALDH11A3; 3-chloroallyl aldehyde dehydrogenase/ glyceraldehyde-3-phosphate dehydrogenase (NADP+) | chr2:10327325-10329601 2011-05-20
Genome Context View View with CoGe 0 AT4G29390.1 3347120 3347398 40S ribosomal protein S30 (RPS30B) | chr4:14465212-14465902 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT2G19750.1 3347120 3347398 40S ribosomal protein S30 (RPS30A) | chr2:8515037-8515806 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT5G56670.1 3347120 3347398 40S ribosomal protein S30 (RPS30C) | chr5:22935413-22935981 REVERSE 2011-05-20
Genome Context View View with CoGe 0 Medtr8g105730.1 3347120 3347398 Ribosomal protein S30 chr08_pseudomolecule_IMGAG_V3 23422803-23423542 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr5g012690.1 3347120 3347398 Ribosomal protein S30 chr05_pseudomolecule_IMGAG_V3 3696133-3695304 F EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT3G61111.1 3356783 3357154 structural constituent of ribosome | chr3:22613230-22613919 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT2G45710.1 3356783 3357145 40S ribosomal protein S27 (RPS27A) | chr2:18831243-18831999 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT5G47930.1 3356783 3357145 40S ribosomal protein S27 (RPS27D) | chr5:19406423-19407329 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT3G61110.1 3356783 3357154 ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27); structural constituent of ribosome | chr3:22611710-22612632 2011-05-20
Genome Context View View with CoGe 0 Medtr2g019110.1 3356783 3357154 Ribosomal protein S27E chr02_pseudomolecule_IMGAG_V3 5167092-5165173 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr1g137900.1 3398658 3400563 AAA ATPase chr01_pseudomolecule_IMGAG_V3 30642068-30637048 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr1g137910.1 3398666 3400385 AAA ATPase chr01_pseudomolecule_IMGAG_V3 30645098-30642405 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr3g133410.1 3489808 3491408 Mov34-1 chr03_pseudomolecule_IMGAG_V3 33804673-33801812 F EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT5G42270.1 3708420 3710704 VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase | chr5:16902659-16905102 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT2G29550.1 4150113 4151611 TUB7; structural constituent of cytoskeleton | chr2:12644258-12645932 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT5G62690.1 4150113 4151611 TUB2; GTP binding / GTPase/ structural molecule | chr5:25181560-25183501 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT5G62700.1 4150113 4151611 TUB3; GTP binding / GTPase/ structural molecule | chr5:25184501-25186426 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT5G23860.1 4150113 4151611 TUB8; structural constituent of cytoskeleton | chr5:8042962-8044528 FORWARD 2011-05-20
Genome Context View View with CoGe 0 Medtr7g106150.1 4150113 4151914 Cell division protein FtsZ; Peptidase S26A, signal peptidase I chr07_pseudomolecule_IMGAG_V3 24471076-24475063 2011-05-20
Genome Context View View with CoGe 0 Medtr1g127110.1 4150118 4151611 Cell division protein FtsZ chr01_pseudomolecule_IMGAG_V3 28531273-28528391 F EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr4g015610.1 4150124 4151611 Cell division protein FtsZ chr04_pseudomolecule_IMGAG_V3 2932860-2930178 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr4g015950.1 4150124 4151611 Cell division protein FtsZ chr04_pseudomolecule_IMGAG_V3 3056629-3053970 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr4g015620.1 4150124 4151611 Cell division protein FtsZ chr04_pseudomolecule_IMGAG_V3 2946202-2943545 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr4g015960.1 4150124 4151611 Cell division protein FtsZ chr04_pseudomolecule_IMGAG_V3 3069970-3067314 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT4G20890.1 4150139 4151611 TUB9; GTP binding / GTPase/ structural molecule | chr4:11182218-11183840 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT5G44340.1 4150139 4151611 TUB4; structural constituent of cytoskeleton | chr5:17859442-17860994 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AC147501_26.1 4150139 4151611 Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr4g149480.1 4150139 4151611 Cell division protein FtsZ chr04_pseudomolecule_IMGAG_V3 37171494-37175799 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr7g139830.1 4462372 4462888 Histone H2A; Histone-fold chr07_pseudomolecule_IMGAG_V3 33549774-33550564 F EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr7g139850.1 4462372 4462888 Histone H2A; Histone-fold chr07_pseudomolecule_IMGAG_V3 33556121-33556949 F EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr2g132470.1 4463141 4464038 Ribosomal protein L10E chr02_pseudomolecule_IMGAG_V3 32034310-32032022 F EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT1G26910.1 4463148 4464038 60S ribosomal protein L10 (RPL10B) | chr1:9321709-9322813 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT1G66580.1 4463148 4464038 60S ribosomal protein L10 (RPL10C) | chr1:24839208-24840439 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT1G14320.1 4463153 4464038 SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome | chr1:4888270-4889408 FORWARD 2011-05-20
Genome Context View View with CoGe 0 Medtr3g083780.1 4463163 4464038 Ribosomal protein L10E chr03_pseudomolecule_IMGAG_V3 19777245-19778828 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr8g043670.1 4652975 4653875 Peptidyl-prolyl cis-trans isomerase, cyclophilin type chr08_pseudomolecule_IMGAG_V3 9500342-9494770 F 2011-05-20
Genome Context View View with CoGe 0 AT1G29910.1 4789767 4790573 CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding | chr1:10472443-10473246 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT1G29920.1 4789767 4790573 CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding | chr1:10475089-10475892 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT1G29930.1 4789767 4790573 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding | chr1:10478071-10478874 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT2G34430.1 4789767 4790573 LHB1B1; chlorophyll binding | chr2:14524818-14525618 FORWARD 2011-05-20
Genome Context View View with CoGe 0 Medtr6g012740.1 4789767 4790573 Chlorophyll A-B binding protein chr06_pseudomolecule_IMGAG_V3 2389037-2387803 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT3G27690.1 4789773 4790573 LHCB2.3; chlorophyll binding | chr3:10256002-10256921 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT2G05100.1 4789773 4790573 LHCB2.1; chlorophyll binding | chr2:1823449-1824331 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT2G05070.1 4789773 4790573 LHCB2.2; chlorophyll binding | chr2:1799436-1800329 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT2G34420.1 4789785 4790573 LHB1B2; chlorophyll binding | chr2:14522716-14523513 REVERSE 2011-05-20
Genome Context View View with CoGe 0 Medtr6g041050.1 4789816 4790573 Chlorophyll A-B binding protein chr06_pseudomolecule_IMGAG_V3 8723376-8722408 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 Medtr6g012720.1 4790277 4790573 Chlorophyll A-B binding protein chr06_pseudomolecule_IMGAG_V3 2381258-2381745 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT3G08900.1 5611987 5613546 RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3); transferase, transferring hexosyl groups | chr3:2708347-2709714 2011-05-20
Genome Context View View with CoGe 0 Medtr5g048590.1 5611987 5613537 Alpha-1,4-glucan-protein synthase (UDP-forming) chr05_pseudomolecule_IMGAG_V3 20550596-20553315 F EGN_Mt090430 2011-05-20
Genome Context View View with CoGe 0 AT5G15650.1 5612009 5613555 RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups | chr5:5092203-5094093 2011-05-20
Genome Context View View with CoGe 0 AT3G02230.1 5612018 5613555 RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) | chr3:415463-417304 2011-05-20
Genome Context View View with CoGe 0 AT3G19760.1 5617176 5618831 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative 2011-05-20
Genome Context View View with CoGe 0 Medtr8g109040.1 5729515 5730023 Ribosomal L37ae protein; chr08_pseudomolecule_IMGAG_V3 24360494-24358956 F EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT3G10950.1 5729567 5730023 60S ribosomal protein L37a (RPL37aB) | chr3:3423893-3424566 FORWARD 2011-05-20
Genome Context View View with CoGe 0 Medtr4g154930.1 5748935 5750393 Cell division protein FtsZ; Peptidase S26A, signal peptidase I chr04_pseudomolecule_IMGAG_V3 38140796-38138633 2011-05-20
Genome Context View View with CoGe 0 AT3G14415.1 5761588 5763390 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy 2011-05-20
Genome Context View View with CoGe 0 AT3G14420.1 5761588 5763390 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy 2011-05-20
Genome Context View View with CoGe 0 AT3G26560.1 5775012 5777866 ATP-dependent RNA helicase, putative | chr3:9750122-9753719 REVERSE 2011-05-20
Genome Context View View with CoGe 0 Medtr1g143740.1 5777394 5777866 Protein of unknown function DUF1605 chr01_pseudomolecule_IMGAG_V3 31834672-31835165 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 0 AT1G17470.1 6441707 6443396 ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1); GTP binding / GTPase | chr1:6003442-6006155 2011-05-20
Genome Context View View with CoGe 0 AT1G72660.1 6441707 6443396 developmentally regulated GTP-binding protein, putative | chr1:27354161-27356543 FORWARD 2011-05-20
Genome Context View View with CoGe 0 AT3G59540.1 6747485 6747758 60S ribosomal protein L38 (RPL38B) | chr3:21995897-21996742 REVERSE 2011-05-20
Genome Context View View with CoGe 0 AT2G43460.1 6747485 6747758 60S ribosomal protein L38 (RPL38A) | chr2:18046285-18047292 REVERSE 2011-05-20
Genome Context View View with CoGe 0 Medtr4g092560.1 6747485 6747758 Ribosomal L38e protein chr04_pseudomolecule_IMGAG_V3 19379636-19378375 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 1 Medtr2g096610.1 478343 478747 Histone H2A; Histone-fold chr02_pseudomolecule_IMGAG_V3 22403225-22404429 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 1 AT3G57870.1 710748 711474 SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase | chr3:21428831-21430110 REVERSE 2011-05-20
Genome Context View View with CoGe 1 Medtr4g096590.1 1407934 1408205 Coatomer subunit alpha-1, putative chr04_pseudomolecule_IMGAG_V3 20369742-20368379 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 1 AT4G17390.1 1839929 1840667 60S ribosomal protein L15 (RPL15B) | chr4:9714407-9715545 REVERSE 2011-05-20
Genome Context View View with CoGe 1 AT4G16720.1 1839929 1840667 60S ribosomal protein L15 (RPL15A) | chr4:9400156-9401315 REVERSE 2011-05-20
Genome Context View View with CoGe 1 AT3G17390.1 2503888 2505069 MTO3 (METHIONINE OVER-ACCUMULATOR 3); methionine adenosyltransferase | chr3:5952484-5953665 REVERSE 2011-05-20
Genome Context View View with CoGe 1 AT1G02500.1 2503888 2505069 SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase | chr1:519037-520218 FORWARD 2011-05-20
Genome Context View View with CoGe 1 AT4G01850.1 2503888 2505069 SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); copper ion binding / methionine adenosyltransferase | chr4:796298-797479 2011-05-20
Genome Context View View with CoGe 1 AT2G36880.1 2503888 2505069 MAT3 (methionine adenosyltransferase 3); copper ion binding / methionine adenosyltransferase | chr2:15479721-15480893 2011-05-20
Genome Context View View with CoGe 1 Medtr7g133710.1 2503888 2505072 S-adenosylmethionine synthetase chr07_pseudomolecule_IMGAG_V3 31361771-31364279 E EGN_Mt090430 20090702 2011-05-20
Genome Context View View with CoGe 1 Medtr8g134210.1 2503900 2505168 S-adenosylmethionine synthetase chr08_pseudomolecule_IMGAG_V3 32232718-32230045 E EGN_Mt090430 20090702 2011-05-20

Database lookup time: 0.13816595077515 sec

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