• Anonymous
  • Login

Search:  Display ?

Segment ID:  Start:  End:

GhGDB Annotated Protein Alignments

This table organizes splice-aligned proteins and their functional annotations, in linear order according to their start/end coordinates on a genomic segment. These alignments do not necessarily represent functional genes, and some genes will lack protein alignments. The search examples demonstrate how to search by Scaffold/BAC ID, Protein ID, or keyword. Click a Scaffold/BAC ID, Protein ID, Description, or Date to filter results according to that value. Click the GDB icon in column 1 to open a new window displaying the corresponding genomic region in Genome Context View. For more information, visit PlantGDB Help.

           
(search examples: 85687395; ATCG01090.1; Triacylglycerol Lip*) [ Export search result ] [ << Prev ][ Next >> ] (Showing 1 - 100 of 204 records / 34 BACs/Scaffolds)
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
Genome Context View View with CoGe 49333368 AT1G16920.1 2226 5550 | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP binding protein GI:218228 2007-07-18
Genome Context View View with CoGe 49333368 AT5G45750.1 2226 5550 | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP-binding protein GI:303744 2007-07-18
Genome Context View View with CoGe 49333368 AT4G18800.1 2226 5550 | Symbol: None | Ras-related GTP-binding family protein, similar to ras-related GTP binding protein RIC2 2007-07-18
Genome Context View View with CoGe 49333368 AT1G06400.1 2226 5550 | Symbol: None | Ras-related GTP-binding protein (ARA-2), identical to Ras-related protein ARA-2 SP:P28185 2007-07-18
Genome Context View View with CoGe 49333368 AT4G18780.1 57373 62095 | Symbol: None | cellulose synthase, catalytic subunit (IRX1), nearly identical to gi:12836997 | chr4:10312665-10316797 2007-07-18
Genome Context View View with CoGe 49333368 AT4G18730.1 68058 70857 | Symbol: None | 60S ribosomal protein L11 (RPL11C) | chr4:10302192-10303393 FORWARD | Aliases: F28A21.140, 2007-07-18
Genome Context View View with CoGe 49333368 AT2G42740.1 68058 70857 | Symbol: None | similar to 60S ribosomal protein L11 (RPL11B) [Arabidopsis thaliana] (TAIR:At3g58700.1); 2007-07-18
Genome Context View View with CoGe 49333368 AT3G58700.1 68058 70857 | Symbol: None | 60S ribosomal protein L11 (RPL11B), ribosomal protein L11, cytosolic, Arabidopsis thaliana, 2007-07-18
Genome Context View View with CoGe 49333368 AT5G45775.1 68058 70732 | Symbol: None | 60S ribosomal protein L11 (RPL11D) | chr5:18582292-18583697 REVERSE | Aliases: None 2007-07-18
Genome Context View View with CoGe 49333368 AT2G34190.1 90273 94301 | Symbol: None | xanthine/uracil permease family protein, contains Pfam profile: PF00860 permease family 2007-07-18
Genome Context View View with CoGe 49333382 AT4G18800.1 2210 5518 | Symbol: None | Ras-related GTP-binding family protein, similar to ras-related GTP binding protein RIC2 2007-07-18
Genome Context View View with CoGe 49333382 AT1G16920.1 2210 5518 | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP binding protein GI:218228 2007-07-18
Genome Context View View with CoGe 49333382 AT1G06400.1 2210 5518 | Symbol: None | Ras-related GTP-binding protein (ARA-2), identical to Ras-related protein ARA-2 SP:P28185 2007-07-18
Genome Context View View with CoGe 49333382 AT5G45750.1 2210 5518 | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP-binding protein GI:303744 2007-07-18
Genome Context View View with CoGe 49333382 AT4G18780.1 58365 63080 | Symbol: None | cellulose synthase, catalytic subunit (IRX1), nearly identical to gi:12836997 | chr4:10312665-10316797 2007-07-18
Genome Context View View with CoGe 49333382 AT2G42740.1 73812 76611 | Symbol: None | similar to 60S ribosomal protein L11 (RPL11B) [Arabidopsis thaliana] (TAIR:At3g58700.1); 2007-07-18
Genome Context View View with CoGe 49333382 AT3G58700.1 73812 76611 | Symbol: None | 60S ribosomal protein L11 (RPL11B), ribosomal protein L11, cytosolic, Arabidopsis thaliana, 2007-07-18
Genome Context View View with CoGe 49333382 AT4G18730.1 73812 76611 | Symbol: None | 60S ribosomal protein L11 (RPL11C) | chr4:10302192-10303393 FORWARD | Aliases: F28A21.140, 2007-07-18
Genome Context View View with CoGe 49333382 AT5G45775.1 73812 76484 | Symbol: None | 60S ribosomal protein L11 (RPL11D) | chr5:18582292-18583697 REVERSE | Aliases: None 2007-07-18
Genome Context View View with CoGe 49333382 AT2G34190.1 95324 99356 | Symbol: None | xanthine/uracil permease family protein, contains Pfam profile: PF00860 permease family 2007-07-18
Genome Context View View with CoGe 49333382 AT1G29230.1 112601 115579 | Symbol: None | CBL-interacting protein kinase 18 (CIPK18), identical to CBL-interacting protein kinase 2007-07-18
Genome Context View View with CoGe 49333382 AT5G45810.1 112743 115579 | Symbol: None | CBL-interacting protein kinase 19 (CIPK19), identical to CBL-interacting protein kinase 2007-07-18
Genome Context View View with CoGe 49333382 AT4G18700.1 112749 115602 | Symbol: None | CBL-interacting protein kinase 12 (CIPK12), identical to CBL-interacting protein kinase 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00020.1 -268 2193 | Symbol: PSBA | Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00070.1 6683 8268 | Symbol: PSBK | PSII K protein | chrC:7017-7202 FORWARD | Aliases: PSBK 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00080.1 7286 8796 | Symbol: PSBI | PSII I protein | chrC:7583-7693 FORWARD | Aliases: PSBI 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00120.1 9630 12553 | Symbol: ATPA | ATPase alpha subunit | chrC:9938-11461 REVERSE | Aliases: ATPA 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00130.1 11232 13990 | Symbol: ATPF | ATPase F subunit. | chrC:11529-12798 REVERSE | Aliases: ATPF 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00140.1 13183 14828 | Symbol: ATPH | ATPase III subunit | chrC:13262-13507 REVERSE | Aliases: ATPH 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00150.1 14695 16844 | Symbol: ATPI | ATPase a subunit | chrC:14021-14770 REVERSE | Aliases: ATPI 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00160.1 15674 17784 | Symbol: RPS2 | Chloroplast ribosomal protein S2 | chrC:15013-15723 REVERSE | Aliases: RPS2 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00190.1 23780 28392 | Symbol: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. | chrC:23111-26329 REVERSE | Aliases: 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00210.1 28858 30347 | Symbol: YCF6 | hypothetical protein | chrC:28089-28178 FORWARD | Aliases: YCF6 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00220.1 30126 31630 | Symbol: PSBM | PSII low MW protein | chrC:28707-28811 REVERSE | Aliases: PSBM 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00270.1 33897 36358 | Symbol: PSBD | PSII D2 protein | chrC:32711-33772 FORWARD | Aliases: PSBD 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00280.1 34906 37727 | Symbol: PSBC | chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00300.1 37034 38622 | Symbol: YCF9 | encodes PsbZ, which is a subunit of photosystem II. In Chlamydomonas, this protein has 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00330.1 38401 40103 | Symbol: RPS14 | 30S chloroplast ribosomal protein S14 | chrC:36938-37240 REVERSE | Aliases: RPS14 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00340.1 38832 42436 | Symbol: PSAB | Encodes the D1 subunit of photosystem I and II reaction centers. | chrC:37375-39579 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00350.1 41062 44714 | Symbol: PSAA | Encodes psaA protein comprising the reaction center for photosystem I along with psaB 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00360.1 44237 46806 | Symbol: YCF3 | hypothetical protein | chrC:42584-43751 REVERSE | Aliases: YCF3 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00380.1 46963 48968 | Symbol: RPS4 | Chloroplast encoded ribosomal protein S4 | chrC:45223-45828 REVERSE | Aliases: RPS4 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00420.1 51414 53290 | Symbol: NDHJ | NADH dehydrogenase subunit | chrC:48677-49153 REVERSE | Aliases: NDHJ 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00430.1 52020 54097 | Symbol: PSBG | photosystem II G protein | chrC:49257-49934 REVERSE | Aliases: PSBG 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00440.1 52758 54520 | Symbol: NDHC | Encodes NADH dehydrogenase D3 subunit of the chloroplast NAD(P)H dehydrogenase complex 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00470.1 55189 56984 | Symbol: ATPE | ATPase epsilon subunit | chrC:52265-52663 REVERSE | Aliases: ATPE 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00480.1 55581 58477 | Symbol: ATPB | chloroplast-encoded gene for beta subunit of ATP synthase | chrC:52660-54156 REVERSE 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00490.1 58017 60859 | Symbol: RBCL | large subunit of RUBISCO. | chrC:54958-56397 FORWARD | Aliases: RBCL 2007-07-18
Genome Context View View with CoGe 85687395 ATMG00280.1 58521 60252 | Symbol: ORF110A | hypothetical protein | chrM:77819-78151 REVERSE | Aliases: ORF110A 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00510.1 62441 63954 | Symbol: PSAI | PSI I protein | chrC:59247-59360 FORWARD | Aliases: PSAI 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00520.1 62961 64915 | Symbol: YCF4 | hypothetical protein | chrC:59772-60326 FORWARD | Aliases: YCF4 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00530.1 64514 66603 | Symbol: YCF10 | hypothetical protein | chrC:60741-61430 FORWARD | Aliases: YCF10 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00540.1 65439 67801 | Symbol: PETA | Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00550.1 67519 69041 | Symbol: PSBJ | PSII component | chrC:63538-63660 REVERSE | Aliases: PSBJ 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00560.1 67781 69297 | Symbol: PSBL | PSII L protein | chrC:63804-63920 REVERSE | Aliases: PSBL 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00570.1 67924 69443 | Symbol: PSBF | PSII cytochrome b559 | chrC:63942-64061 REVERSE | Aliases: PSBF 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00580.1 68053 69704 | Symbol: PSBE | PSII cytochrome b559. There have been many speculations about the function of Cyt b559, 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00590.1 69149 70644 | Symbol: ORF31 | hypothetical protein | chrC:65712-65807 FORWARD | Aliases: ORF31 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00600.1 69422 70935 | Symbol: PETG | Cytochrome b6-f complex, subunit V. Disruption of homologous gene in Chlamydomonas results 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00630.1 70398 71926 | Symbol: PSAJ | PSI J protein | chrC:66929-67063 FORWARD | Aliases: PSAJ 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00640.1 71033 72633 | Symbol: RPL33 | encodes a chloroplast ribosomal protein L33, a constituent of the large subunit of 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00650.1 71578 73283 | Symbol: RPS18 | chloroplast-encoded ribosomal protein S18 | chrC:67917-68222 FORWARD | Aliases: RPS18 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00660.1 72087 73840 | Symbol: RPL20 | encodes a chloroplast ribosomal protein L20, a constituent of the large subunit of 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00670.1 73517 76178 | Symbol: CLPP1 | Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00680.1 76092 79018 | Symbol: PSBB | encodes for CP47, subunit of the photosystem II reaction center. | chrC:72371-73897 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00690.1 77795 79297 | Symbol: PSBT | photosystem II protein T. Encodes the chlorophyll a apoprotein CP47. | chrC:74082-74183 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00700.1 77963 79494 | Symbol: PSBN | PSII low MW protein | chrC:74249-74380 REVERSE | Aliases: PSBN 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00710.1 78199 79820 | Symbol: PSBH | Encodes a 8 kD phosphoprotein that is a component of the photosystem II oxygen evolving 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00720.1 79368 81415 | Symbol: PETB | Encodes the cytochrome b(6) subunit of the cytochrome b6f complex. | chrC:74841-76292 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00730.1 80981 82863 | Symbol: PETD | A chloroplast gene encoding subunit IV of the cytochrome b6/f complex | chrC:76481-77672 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00740.1 81644 84033 | Symbol: RPOA | RNA polymerase alpha subunit | chrC:77901-78890 REVERSE | Aliases: RPOA 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00750.1 82704 84520 | Symbol: RPS11 | 30S chloroplast ribosomal protein S11 | chrC:78960-79376 REVERSE | Aliases: RPS11 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00760.1 83263 84776 | Symbol: RPL36 | encodes a chloroplast ribosomal protein L36, a constituent of the large subunit of 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00770.1 83829 85633 | Symbol: RPS8 | chloroplast 30S ribosomal protein S8 | chrC:80068-80472 REVERSE | Aliases: RPS8 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00780.1 84387 86155 | Symbol: RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00790.1 84888 86695 | Symbol: RPL16 | chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00800.1 86595 88651 | Symbol: RPS3 | encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00820.1 87826 89504 | Symbol: RPS19 | Encodes a 6.8-kDa protein of the small ribosomal subunit. | chrC:84005-84283 REVERSE 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00830.1 88163 91080 | Symbol: RPL2.1 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01310.1 88163 91080 | Symbol: RPL2.2 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01300.1 89699 91380 | Symbol: RPL23.2 | One of two chloroplast genes that encode chloroplast ribosomal protein L23, a constituent 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00840.1 89699 91380 | Symbol: RPL23.1 | One of two chloroplast genes that encode chloroplast ribosomal protein L23, a constituent 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01280.1 90304 98600 | Symbol: YCF2.2 | hypothetical protein | chrC:145291-152175 REVERSE | Aliases: YCF2.2 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00860.1 90304 98600 | Symbol: YCF2.1 | hypothetical protein | chrC:86474-93358 FORWARD | Aliases: YCF2.1 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00870.1 97342 98974 | Symbol: ORF77.1 | hypothetical protein | chrC:93495-93728 FORWARD | Aliases: ORF77.1 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01270.1 97342 98974 | Symbol: ORF77.2 | hypothetical protein | chrC:144921-145154 REVERSE | Aliases: ORF77.2 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00890.1 98846 102104 | Symbol: NDHB.1 | NADH dehydrogenase ND2 | chrC:94941-96795 REVERSE | Aliases: NDHB.1 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01250.1 98846 102104 | Symbol: NDHB.2 | NADH dehydrogenase ND2 | chrC:141854-143708 FORWARD | Aliases: NDHB.2 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01240.1 101399 103266 | Symbol: RPS7.2 | 30S chloroplast ribosomal protein S7 | chrC:140704-141171 FORWARD | Aliases: RPS7.2 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00900.1 101399 103266 | Symbol: RPS7.1 | encodes a chloroplast ribosomal protein S7, a constituent of the small subunit of 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01230.1 102399 104413 | Symbol: RPS12B | chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00905.1 102399 104413 | Symbol: RPS12C | chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct 2007-07-18
Genome Context View View with CoGe 85687395 ATCG00065.1 102399 104413 | Symbol: RPS12A | chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01000.1 113627 116091 | Symbol: YCF1.1 | hypothetical protein | chrC:109405-110436 FORWARD | Aliases: YCF1.1 2007-07-18
Genome Context View View with CoGe 85687395 AT2G07739.1 113630 115630 | Symbol: None | expressed protein | chr2:3495508-3496107 REVERSE | Aliases: T5E7.2, T5E7_2 2007-07-18
Genome Context View View with CoGe 85687395 ATMG00370.1 113630 115630 | Symbol: ORF199 | hypothetical protein | chrM:104954-105553 REVERSE | Aliases: ORF199 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01120.1 119695 121367 | Symbol: RPS15 | encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01110.1 120066 122647 | Symbol: NDHH | plastid NAD(P)H dehydrogenase subunit H 49KDa protein | chrC:122011-123192 REVERSE | 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01100.1 121249 124816 | Symbol: NDHA | NADH dehydrogenase ND1 | chrC:119847-122009 REVERSE | Aliases: NDHA 2007-07-18
Genome Context View View with CoGe 85687395 ATCG01090.1 123499 125417 | Symbol: NDHI | Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex | chrC:119244-119762 2007-07-18

Database lookup time: 0.026058912277222 sec

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!