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CsGDB Annotated Protein Alignments

This table organizes splice-aligned proteins and their functional annotations, in linear order according to their start/end coordinates on a genomic segment. These alignments do not necessarily represent functional genes, and some genes will lack protein alignments. The search examples demonstrate how to search by Scaffold/BAC ID, Protein ID, or keyword. Click a Scaffold/BAC ID, Protein ID, Description, or Date to filter results according to that value. Click the GDB icon in column 1 to open a new window displaying the corresponding genomic region in Genome Context View. For more information, visit PlantGDB Help.

           
(search examples: 154; AT3G18780.1; Triacylglycerol Lip*) [ Export search result ] [ << Prev ][ Next >> ] (Showing 1 - 100 of 5463 records / 295 BACs/Scaffolds)
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
Genome Context View View with CoGe CsScaffold20 AT3G22290.1 51499 62622 unknown protein | chr3:7882082-7885260 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold20 Medtr3g086360.1 189280 198630 Protein of unknown function DUF1716, eukaryotic chr03_pseudomolecule_IMGAG_V3 20177319-20180595 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold32 Medtr1g093450.1 25272 27609 Protein of unknown function DUF850, transmembrane eukaryotic chr01_pseudomolecule_IMGAG_V3 18993925-18999059 2010-11-05
Genome Context View View with CoGe CsScaffold32 AT4G12590.1 25272 27417 unknown protein | chr4:7451291-7452976 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold33 AT3G55320.1 33659 41921 PGP20 (P-GLYCOPROTEIN 20); ATPase, coupled to transmembrane movement of substances | chr3:20507391-20513393 2010-11-05
Genome Context View View with CoGe CsScaffold33 AT2G39480.1 33659 41921 PGP6 (P-GLYCOPROTEIN 6); ATPase, coupled to transmembrane movement of substances | chr2:16478249-16484827 2010-11-05
Genome Context View View with CoGe CsScaffold33 Medtr7g025160.1 183678 188780 2-oxoglutarate dehydrogenase, E1 component chr07_pseudomolecule_IMGAG_V3 6058895-6053003 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold33 AT5G65750.1 183678 188780 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric 2010-11-05
Genome Context View View with CoGe CsScaffold33 AT3G55410.1 183678 188780 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric 2010-11-05
Genome Context View View with CoGe CsScaffold33 Medtr2g034250.1 204657 205260 Actin-binding, cofilin/tropomyosin type chr02_pseudomolecule_IMGAG_V3 9519232-9521565 F EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold33 AC233662_56.1 204657 205260 Actin-binding, cofilin/tropomyosin type AC233662.1 257418-259371 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold33 Medtr4g149850.1 204657 205260 Actin-binding, cofilin/tropomyosin type chr04_pseudomolecule_IMGAG_V3 37309050-37310116 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold33 Medtr4g149600.1 204657 205260 Actin-binding, cofilin/tropomyosin type chr04_pseudomolecule_IMGAG_V3 37225693-37226741 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold33 AT3G46000.1 204733 205260 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2); actin binding | chr3:16907743-16908822 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold33 AT3G46010.1 204733 205260 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1); actin binding | chr3:16909679-16910678 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold33 AT5G59890.1 204733 205260 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin binding | chr5:24122545-24123596 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold46 AT1G16470.1 10440 14184 PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase | chr1:5623122-5625439 2010-11-05
Genome Context View View with CoGe CsScaffold46 AT1G79210.1 10440 14184 20S proteasome alpha subunit B, putative | chr1:29796286-29798240 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold46 AT1G53850.1 22049 25828 PAE1; endopeptidase/ peptidase/ threonine-type endopeptidase | chr1:20104131-20105792 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold46 AT3G14290.1 22049 25828 PAE2; endopeptidase/ peptidase/ threonine-type endopeptidase | chr3:4764364-4766381 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold46 Medtr2g080730.1 42919 44527 Surfeit locus 5 chr02_pseudomolecule_IMGAG_V3 18692315-18686814 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold53 AT1G80350.1 87995 91581 ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding | chr1:30205499-30208050 2010-11-05
Genome Context View View with CoGe CsScaffold53 Medtr1g143360.1 181798 182356 Histone H2A; Histone-fold chr01_pseudomolecule_IMGAG_V3 31608127-31608808 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold53 Medtr1g013290.1 181798 182130 Histone H2A; Histone-fold chr01_pseudomolecule_IMGAG_V3 2348314-2346490 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold53 AT2G38810.1 181798 182374 HTA8 (HISTONE H2A 8); DNA binding | chr2:16219444-16220679 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold53 AT3G54560.1 181798 182374 HTA11; DNA binding | chr3:20196532-20197466 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr8g133880.1 143336 143814 RNA polymerase, beta subunit chr08_pseudomolecule_IMGAG_V3 32064698-32063529 H EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr3g163600.1 151621 157673 Exportin-7-B, related chr03_pseudomolecule_IMGAG_V3 43020639-43026471 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr3g163590.1 158711 162952 Exportin-7-B, related chr03_pseudomolecule_IMGAG_V3 43005033-43013437 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr8g074360.1 415240 427430 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase chr08_pseudomolecule_IMGAG_V3 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr5g038210.1 415240 427430 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase chr05_pseudomolecule_IMGAG_V3 2010-11-05
Genome Context View View with CoGe CsScaffold55 AT1G69960.1 415240 427433 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A); protein serine/threonine phosphatase | chr1:26348892-26350511 2010-11-05
Genome Context View View with CoGe CsScaffold55 AT1G59830.1 415240 427430 PP2A-1; protein serine/threonine phosphatase | chr1:22020708-22022293 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold55 AT1G10430.1 415240 427430 PP2A-2; protein serine/threonine phosphatase | chr1:3428705-3430437 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr8g113000.1 585880 587617 Band 7 protein chr08_pseudomolecule_IMGAG_V3 25546903-25543595 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold55 AT5G62740.1 585921 587650 band 7 family protein | chr5:25201320-25202535 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr8g113260.1 585924 587666 Band 7 protein chr08_pseudomolecule_IMGAG_V3 25695037-25692007 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr8g112900.1 585924 587617 Band 7 protein chr08_pseudomolecule_IMGAG_V3 25507084-25505200 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr8g113160.1 585924 587617 Band 7 protein chr08_pseudomolecule_IMGAG_V3 25645366-25641104 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr8g113220.1 585924 587617 Band 7 protein chr08_pseudomolecule_IMGAG_V3 25673893-25670585 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold55 AT1G69840.1 585927 587650 band 7 family protein | chr1:26293932-26295150 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold55 Medtr8g074090.1 615463 618577 Dehydrogenase, E1 component chr08_pseudomolecule_IMGAG_V3 14677469-14685386 F EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold55 AT1G24180.1 615484 618580 IAR4; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate 2010-11-05
Genome Context View View with CoGe CsScaffold55 AT1G59900.1 615493 618577 AT-E1 ALPHA; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / 2010-11-05
Genome Context View View with CoGe CsScaffold67 Medtr5g085850.1 63405 70217 Ras small GTPase, Rab type chr05_pseudomolecule_IMGAG_V3 32852818-32846246 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold67 AT5G37680.1 63405 70217 ATARLA1A (ADP-ribosylation factor-like A1A); GTP binding | chr5:14969797-14971098 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold67 Medtr5g086920.1 218538 218792 Calcium-binding EF-hand chr05_pseudomolecule_IMGAG_V3 33492370-33492624 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold67 AT5G17480.1 218538 218792 APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1); calcium ion binding | chr5:5762689-5762940 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold89 Medtr5g100030.1 45715 54619 Ovarian tumour, otubain; Zinc finger, C2H2-type chr05_pseudomolecule_IMGAG_V3 40041797-40037656 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold89 Medtr2g005950.1 88527 88934 Ribosomal protein L27e; KOW chr02_pseudomolecule_IMGAG_V3 480788-479953 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold89 Medtr2g006490.1 88527 88934 Ribosomal protein L27e; KOW chr02_pseudomolecule_IMGAG_V3 667849-668684 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold89 Medtr4g089690.1 88527 88934 Ribosomal protein L27e; KOW chr04_pseudomolecule_IMGAG_V3 18739710-18738895 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold89 Medtr3g068670.1 97196 97534 Eukaryotic translation initiation factor SUI1 chr03_pseudomolecule_IMGAG_V3 16194124-16192851 F EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold89 Medtr5g100130.1 97196 97528 Eukaryotic translation initiation factor SUI1 chr05_pseudomolecule_IMGAG_V3 40082087-40080621 F EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold89 Medtr2g018990.1 233245 234920 Glycosyl transferase, family 8 chr02_pseudomolecule_IMGAG_V3 5113781-5117095 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold89 AT2G20810.1 233256 234920 GAUT10 (GALACTURONOSYLTRANSFERASE 10); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, 2010-11-05
Genome Context View View with CoGe CsScaffold89 Medtr2g006790.1 233493 234920 Glycosyl transferase, family 8 chr02_pseudomolecule_IMGAG_V3 819049-820651 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold122 Medtr7g011630.1 20825 28071 AAA ATPase, central region; Clp, N terminal chr07_pseudomolecule_IMGAG_V3 2868710-2875258 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold122 Medtr6g014150.1 20993 28466 AAA ATPase, central region; Clp, N terminal chr06_pseudomolecule_IMGAG_V3 3218740-3210381 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold122 AT5G15450.1 21009 28469 CLPB3 (CASEIN LYTIC PROTEINASE B3); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr4g078490.1 8786 11165 NAD-dependent epimerase/dehydratase chr04_pseudomolecule_IMGAG_V3 15397400-15401318 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr2g114640.1 8786 11165 NAD-dependent epimerase/dehydratase chr02_pseudomolecule_IMGAG_V3 27141771-27136077 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT3G46440.1 8786 11153 UXS5; UDP-glucuronate decarboxylase/ catalytic | chr3:17089268-17091611 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT5G59290.1 8792 11159 UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3); UDP-glucuronate decarboxylase/ catalytic | chr5:23915814-23917953 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT2G28760.1 8792 10947 NAD-dependent epimerase/dehydratase family protein | chr2:12336469-12338642 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT3G12587.1 24267 24380 unknown protein | chr3:3994586-3994699 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr8g145020.1 29416 31789 Heat shock protein Hsp70 chr08_pseudomolecule_IMGAG_V3 35172848-35170394 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr7g118170.1 29416 31789 Heat shock protein Hsp70 chr07_pseudomolecule_IMGAG_V3 27742753-27739605 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr7g025840.1 29416 31789 Heat shock protein Hsp70 chr07_pseudomolecule_IMGAG_V3 6450893-6446897 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT1G16030.1 29416 31789 Hsp70b (heat shock protein 70B); ATP binding | chr1:5502386-5504326 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT5G02490.1 29416 31789 heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) | chr5:550296-552565 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT3G09440.1 29416 31789 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) | chr3:2903434-2905632 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT3G12580.1 29416 31789 HSP70 (heat shock protein 70); ATP binding | chr3:3991487-3993689 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT5G02500.1 29416 31789 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding | chr5:554055-556334 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT1G56410.1 29416 31687 ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2); ATP binding | chr1:21117147-21119241 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr7g025700.1 30221 31789 Heat shock protein Hsp70; chr07_pseudomolecule_IMGAG_V3 6362743-6364578 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr8g145020.1 89250 91584 Heat shock protein Hsp70 chr08_pseudomolecule_IMGAG_V3 35172848-35170394 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr7g118170.1 89250 91584 Heat shock protein Hsp70 chr07_pseudomolecule_IMGAG_V3 27742753-27739605 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr7g025840.1 89250 91584 Heat shock protein Hsp70 chr07_pseudomolecule_IMGAG_V3 6450893-6446897 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr7g025700.1 89250 90806 Heat shock protein Hsp70; chr07_pseudomolecule_IMGAG_V3 6362743-6364578 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT1G16030.1 89250 91584 Hsp70b (heat shock protein 70B); ATP binding | chr1:5502386-5504326 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT5G02490.1 89250 91584 heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) | chr5:550296-552565 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT3G09440.1 89250 91584 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) | chr3:2903434-2905632 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT5G02500.1 89250 91584 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding | chr5:554055-556334 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT3G12580.1 89250 91584 HSP70 (heat shock protein 70); ATP binding | chr3:3991487-3993689 REVERSE 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT1G56410.1 89340 91584 ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2); ATP binding | chr1:21117147-21119241 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr5g094710.1 191581 193105 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal chr05_pseudomolecule_IMGAG_V3 37494913-37491130 E EGN_Mt090430 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr7g027010.1 195516 197318 Actin/actin-like chr07_pseudomolecule_IMGAG_V3 7007418-7011883 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr3g144140.1 195799 197318 Actin/actin-like chr03_pseudomolecule_IMGAG_V3 37310058-37313088 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr2g008170.1 195817 197318 Actin/actin-like chr02_pseudomolecule_IMGAG_V3 1442996-1436841 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 Medtr7g111960.1 195817 197318 Actin/actin-like chr07_pseudomolecule_IMGAG_V3 26425230-26423049 E EGN_Mt090430 20090702 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT2G42100.1 195817 197318 actin, putative | chr2:17560211-17561945 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT1G49240.1 195817 197318 ACT8 (ACTIN 8); copper ion binding / structural constituent of cytoskeleton | chr1:18216539-18217947 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT5G09810.1 195817 197318 ACT7 (ACTIN 7); structural constituent of cytoskeleton | chr5:3052809-3054220 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT2G37620.1 195817 197318 ACT1 (ACTIN 1); structural constituent of cytoskeleton | chr2:15779761-15781241 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT3G53750.1 195817 197318 ACT3 (actin 3); structural constituent of cytoskeleton | chr3:19915924-19917371 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT3G12110.1 195817 197318 ACT11 (actin-11); structural constituent of cytoskeleton | chr3:3858116-3859609 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT5G59370.1 195817 197318 ACT4 (ACTIN 4); structural constituent of cytoskeleton | chr5:23950109-23951586 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT3G46520.1 195817 197318 ACT12 (ACTIN-12); structural constituent of cytoskeleton | chr3:17128567-17129981 FORWARD 2010-11-05
Genome Context View View with CoGe CsScaffold154 AT3G18780.1 195817 197191 ACT2 (ACTIN 2); structural constituent of cytoskeleton | chr3:6475535-6476728 FORWARD 2010-11-05

Database lookup time: 0.002655029296875 sec

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