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CpGDB Annotated Protein Alignments

This table organizes splice-aligned proteins and their functional annotations, in linear order according to their start/end coordinates on a genomic segment. These alignments do not necessarily represent functional genes, and some genes will lack protein alignments. The search examples demonstrate how to search by Scaffold/BAC ID, Protein ID, or keyword. Click a Scaffold/BAC ID, Protein ID, Description, or Date to filter results according to that value. Click the GDB icon in column 1 to open a new window displaying the corresponding genomic region in Genome Context View. For more information, visit PlantGDB Help.

           
(search examples: 1; AT3G55280.1; Triacylglycerol Lip*) [ Export search result ] [ << Prev ][ Next >> ] (Showing 1 - 100 of 5001 records / 442 BACs/Scaffolds)
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
GDB CoGe Scaffold/BAC ID Splice-Aligned Protein ID Start position End position Description Date
Genome Context View View with CoGe 0 Medtr7g081040.1 1103640 1109114 Protein kinase chr07_pseudomolecule_IMGAG_V3 17409343-17412787 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 AT5G01020.1 1103790 1109114 protein kinase family protein | chr5:6309-8270 REVERSE 2011-03-30
Genome Context View View with CoGe 0 Medtr7g080640.1 2633063 2637882 KH, type 1 chr07_pseudomolecule_IMGAG_V3 17204904-17198812 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 AT2G38610.1 2633063 2637882 KH domain-containing protein | chr2:16147552-16149638 REVERSE 2011-03-30
Genome Context View View with CoGe 0 AT3G08620.1 2633063 2637882 KH domain-containing protein | chr3:2617925-2620314 FORWARD 2011-03-30
Genome Context View View with CoGe 0 Medtr6g089770.1 3743808 3758881 CoA-binding chr06_pseudomolecule_IMGAG_V3 18694209-18699277 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 Medtr1g065930.1 3825053 3827213 Thioredoxin domain 2 chr01_pseudomolecule_IMGAG_V3 13270841-13268399 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 Medtr4g100920.1 3825053 3827213 Thioredoxin domain 2 chr04_pseudomolecule_IMGAG_V3 21697575-21696994 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 Medtr3g133440.1 3825053 3827213 Thioredoxin fold chr03_pseudomolecule_IMGAG_V3 33828572-33830471 F EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 AT5G08290.1 3825053 3827213 YLS8; catalytic | chr5:2666043-2666936 FORWARD 2011-03-30
Genome Context View View with CoGe 0 AT5G23140.1 4066011 4067484 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase | chr5:7783811-7784826 FORWARD 2011-03-30
Genome Context View View with CoGe 0 ATCG00830.1 5420271 5421757 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex 2011-03-30
Genome Context View View with CoGe 0 ATCG01310.1 5420271 5421757 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex 2011-03-30
Genome Context View View with CoGe 0 Medtr4g042410.1 5420319 5420669 Nucleic acid-binding, OB-fold chr04_pseudomolecule_IMGAG_V3 10121744-10122937 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 Medtr3g043780.1 5421329 5421757 Ribosomal protein L2 chr03_pseudomolecule_IMGAG_V3 12001684-12002286 F EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 Medtr4g042420.1 5421329 5421734 Translation protein SH3-like chr04_pseudomolecule_IMGAG_V3 10122950-10123569 F EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 Medtr4g160370.1 5421339 5421871 Translation protein SH3-like chr04_pseudomolecule_IMGAG_V3 40635566-40636162 H EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 Medtr3g043790.1 5421814 5422091 Ribosomal protein S19/S15 chr03_pseudomolecule_IMGAG_V3 12002292-12002875 F EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 ATCG00820.1 5421814 5422091 Encodes a 6.8-kDa protein of the small ribosomal subunit. | chrC:84005-84283 REVERSE 2011-03-30
Genome Context View View with CoGe 0 ATCG00800.1 5422560 5423216 encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex 2011-03-30
Genome Context View View with CoGe 0 ATCG00790.1 5424430 5424837 chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit 2011-03-30
Genome Context View View with CoGe 0 Medtr2g104820.1 5424637 5424837 Ribosomal protein L16 chr02_pseudomolecule_IMGAG_V3 24830030-24830306 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 0 Medtr4g042190.1 5424968 5425336 Ribosomal protein L14, bacterial and organelle form chr04_pseudomolecule_IMGAG_V3 10085251-10084191 E 2011-03-30
Genome Context View View with CoGe 0 ATCG00780.1 5424968 5425336 encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex 2011-03-30
Genome Context View View with CoGe 0 ATCG00770.1 5425599 5426003 chloroplast 30S ribosomal protein S8 | chrC:80068-80472 REVERSE 2011-03-30
Genome Context View View with CoGe 0 Medtr4g042180.1 5425623 5426003 Ribosomal protein S8 chr04_pseudomolecule_IMGAG_V3 10084185-10082900 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 Medtr4g156900.1 575 1440 Dynamin GTPase effector chr04_pseudomolecule_IMGAG_V3 38966203-38964423 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 AT1G14830.1 575 23397 ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C); GTP binding / GTPase | chr1:5107699-5111470 REVERSE 2011-03-30
Genome Context View View with CoGe 1 Medtr4g156910.1 1290 23397 Dynamin central region; Dynamin; Dynamin GTPase effector chr04_pseudomolecule_IMGAG_V3 38973287-38965071 2011-03-30
Genome Context View View with CoGe 1 AT5G22950.1 381162 384952 VPS24.1 | chr5:7681380-7682720 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AC235487_18.1 407303 438137 ABC transporter related AC235487.1 100187-95222 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 AT2G28070.1 407303 438161 ABC transporter family protein | chr2:11956432-11959782 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AC235487_12.1 474838 478608 ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 AT5G60790.1 474838 478638 ATGCN1; transporter | chr5:24453760-24455767 REVERSE 2011-03-30
Genome Context View View with CoGe 1 Medtr6g013010.1 854482 855428 Major pollen allergen Lol pI; Expansin 45, endoglucanase-like chr06_pseudomolecule_IMGAG_V3 2627141-2625267 2011-03-30
Genome Context View View with CoGe 1 Medtr4g111750.1 854482 855428 Major pollen allergen Lol pI; Expansin 45, endoglucanase-like chr04_pseudomolecule_IMGAG_V3 25646027-25647739 2011-03-30
Genome Context View View with CoGe 1 Medtr5g044880.1 854482 855428 Expansin 45, endoglucanase-like chr05_pseudomolecule_IMGAG_V3 18675821-18673646 F EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 AT1G26770.1 854482 855428 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall | chr1:9259805-9260792 2011-03-30
Genome Context View View with CoGe 1 AT2G03090.1 854482 855446 ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) | chr2:917361-918554 REVERSE 2011-03-30
Genome Context View View with CoGe 1 AT1G69530.1 854482 855428 ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) | chr1:26142034-26143051 FORWARD 2011-03-30
Genome Context View View with CoGe 1 Medtr7g010300.1 854485 855425 Expansin 45, endoglucanase-like chr07_pseudomolecule_IMGAG_V3 2195849-2193363 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 AT1G14000.1 1195642 1201531 VIK (VH1-INTERACTING KINASE); ATP binding / protein kinase/ protein serine/threonine/tyrosine kinase 2011-03-30
Genome Context View View with CoGe 1 AT1G13980.1 1214533 1219633 GN (GNOM); GTP:GDP antiporter/ protein homodimerization | chr1:4789587-4794397 FORWARD 2011-03-30
Genome Context View View with CoGe 1 Medtr8g145440.1 1447951 1450664 Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup chr08_pseudomolecule_IMGAG_V3 35357071-35354402 2011-03-30
Genome Context View View with CoGe 1 AT1G13950.1 1447951 1450664 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1); translation initiation factor | chr1:4773631-4774668 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AT1G69340.1 1608476 1615489 appr-1-p processing enzyme family protein | chr1:26066298-26069644 FORWARD 2011-03-30
Genome Context View View with CoGe 1 Medtr5g046640.1 1683765 1688292 Leucine-rich repeat, N-terminal chr05_pseudomolecule_IMGAG_V3 19622011-19617416 F EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 AT5G61240.1 1683767 1688292 protein binding | chr5:24629485-24631958 FORWARD 2011-03-30
Genome Context View View with CoGe 1 Medtr4g115650.1 1745644 1746933 6-phosphogluconate dehydrogenase, C-terminal-like; ; ; chr04_pseudomolecule_IMGAG_V3 26823562-26825850 2011-03-30
Genome Context View View with CoGe 1 Medtr5g046790.1 1745644 1746945 6-phosphogluconate dehydrogenase, C-terminal-like; ; ; chr05_pseudomolecule_IMGAG_V3 19702073-19699457 2011-03-30
Genome Context View View with CoGe 1 AT5G15490.1 1745644 1746945 UDP-glucose 6-dehydrogenase, putative | chr5:5027872-5029314 REVERSE 2011-03-30
Genome Context View View with CoGe 1 AT3G29360.1 1745644 1746939 UDP-glucose 6-dehydrogenase, putative | chr3:11267375-11268817 REVERSE 2011-03-30
Genome Context View View with CoGe 1 Medtr4g115400.1 1805192 1807588 14-3-3 protein chr04_pseudomolecule_IMGAG_V3 26703737-26699710 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 Medtr5g046960.1 1806004 1807575 14-3-3 protein chr05_pseudomolecule_IMGAG_V3 19787430-19791075 F EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 AT2G03690.1 2094361 2096952 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein | chr2:1122122-1123011 2011-03-30
Genome Context View View with CoGe 1 AT3G02230.1 2248821 2251149 RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) | chr3:415463-417304 2011-03-30
Genome Context View View with CoGe 1 AT5G15650.1 2248822 2251155 RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups | chr5:5092203-5094093 2011-03-30
Genome Context View View with CoGe 1 AT3G08900.1 2248834 2250960 RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3); transferase, transferring hexosyl groups | chr3:2708347-2709714 2011-03-30
Genome Context View View with CoGe 1 Medtr5g048590.1 2248840 2250960 Alpha-1,4-glucan-protein synthase (UDP-forming) chr05_pseudomolecule_IMGAG_V3 20550596-20553315 F EGN_Mt090430 2011-03-30
Genome Context View View with CoGe 1 Medtr8g077120.1 2607811 2608259 Methyladenine glycosylase chr08_pseudomolecule_IMGAG_V3 15295351-15294621 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 Medtr3g094740.1 2862189 2863971 RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit chr03_pseudomolecule_IMGAG_V3 2011-03-30
Genome Context View View with CoGe 1 Medtr3g094730.1 2862189 2863971 RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit chr03_pseudomolecule_IMGAG_V3 2011-03-30
Genome Context View View with CoGe 1 AT5G05470.1 2862189 2863980 EIF2 ALPHA; RNA binding / translation initiation factor | chr5:1620579-1622214 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AT2G40290.1 2862340 2863980 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative 2011-03-30
Genome Context View View with CoGe 1 Medtr3g094720.1 2863315 2863971 RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit chr03_pseudomolecule_IMGAG_V3 2011-03-30
Genome Context View View with CoGe 1 AC233660_2.1 2899085 2901900 Armadillo-like helical AC233660.2 13161-17702 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 AT1G13320.1 2899085 2907120 PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3); binding / protein phosphatase type 2A regulator | chr1:4563692-4567348 2011-03-30
Genome Context View View with CoGe 1 AT1G25490.1 2899085 2907120 RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator | chr1:8951700-8954899 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AT3G25800.1 2899085 2907120 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator | chr3:9422822-9425783 2011-03-30
Genome Context View View with CoGe 1 AC233660_22.1 2901864 2903052 Armadillo-like helical AC233660.2 81080-82793 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 Medtr5g068520.1 2968995 2969776 ATP-dependent Clp protease adaptor protein ClpS chr05_pseudomolecule_IMGAG_V3 24527064-24520850 E EGN_Mt090430 2011-03-30
Genome Context View View with CoGe 1 Medtr1g117410.1 2974022 2976096 lysine and histidine specific transporter, putative chr01_pseudomolecule_IMGAG_V3 25148119-25144065 E 2011-03-30
Genome Context View View with CoGe 1 Medtr1g117800.1 2974022 2976096 lysine and histidine specific transporter, putative chr01_pseudomolecule_IMGAG_V3 25397681-25401736 E 2011-03-30
Genome Context View View with CoGe 1 AT1G13245.1 3123520 3123648 RTFL17 (ROTUNDIFOLIA LIKE 17) | chr1:4525852-4525977 REVERSE 2011-03-30
Genome Context View View with CoGe 1 AT3G25717.1 3123526 3123648 RTFL16 (ROTUNDIFOLIA LIKE 16) | chr3:9375472-9375594 REVERSE 2011-03-30
Genome Context View View with CoGe 1 Medtr1g118350.1 3384863 3385690 Phosphoenolpyruvate carboxylase chr01_pseudomolecule_IMGAG_V3 25697671-25699881 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 AT3G25585.1 3717698 3723342 AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted 2011-03-30
Genome Context View View with CoGe 1 AT1G13560.1 3717698 3723342 AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted 2011-03-30
Genome Context View View with CoGe 1 AT3G12360.1 4319127 4322816 ITN1 (INCREASED TOLERANCE TO NACL); protein binding | chr3:3934146-3936495 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AT5G02610.1 4373739 4374911 60S ribosomal protein L35 (RPL35D) | chr5:587611-588547 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AT2G39390.1 4373739 4374911 60S ribosomal protein L35 (RPL35B) | chr2:16450803-16451762 REVERSE 2011-03-30
Genome Context View View with CoGe 1 AT3G55170.1 4373739 4374911 60S ribosomal protein L35 (RPL35C) | chr3:20453136-20454293 REVERSE 2011-03-30
Genome Context View View with CoGe 1 AT3G09500.1 4373739 4374911 60S ribosomal protein L35 (RPL35A) | chr3:2917047-2917895 FORWARD 2011-03-30
Genome Context View View with CoGe 1 Medtr4g079120.1 4374105 4374782 Ribosomal protein L29 chr04_pseudomolecule_IMGAG_V3 15756471-15758931 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 Medtr7g089730.1 4378889 4380011 Ribosomal protein L29 chr07_pseudomolecule_IMGAG_V3 19822694-19822323 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 Medtr8g121890.1 4402529 4406901 CPSF A subunit, C-terminal; WD40-like chr08_pseudomolecule_IMGAG_V3 28354924-28360303 E EGN_Mt090430 2011-03-30
Genome Context View View with CoGe 1 Medtr8g121570.1 4402529 4406901 CPSF A subunit, C-terminal; WD40-like chr08_pseudomolecule_IMGAG_V3 28219201-28214106 E EGN_Mt090430 2011-03-30
Genome Context View View with CoGe 1 AT3G55200.1 4402529 4406901 splicing factor, putative | chr3:20460533-20464361 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AT3G55220.1 4402529 4406901 splicing factor, putative | chr3:20467116-20470944 REVERSE 2011-03-30
Genome Context View View with CoGe 1 Medtr6g013740.1 4402534 4405359 CPSF A subunit, C-terminal chr06_pseudomolecule_IMGAG_V3 3001597-3004813 E EGN_Mt090430 20090702 2011-03-30
Genome Context View View with CoGe 1 Medtr8g052910.1 4408792 4410081 Ribosomal protein S4E; RNA-binding S4; KOW; ; chr08_pseudomolecule_IMGAG_V3 11756394-11753781 E EGN_Mt090430 2011-03-30
Genome Context View View with CoGe 1 Medtr7g076040.1 4408792 4410081 Ribosomal protein S4E; RNA-binding S4; ; chr07_pseudomolecule_IMGAG_V3 15385652-15388509 E EGN_Mt090430 2011-03-30
Genome Context View View with CoGe 1 Medtr5g018870.1 4408792 4410081 Ribosomal protein S4E; RNA-binding S4; KOW; ; chr05_pseudomolecule_IMGAG_V3 6973451-6970833 E EGN_Mt090430 2011-03-30
Genome Context View View with CoGe 1 Medtr4g012030.1 4408792 4410081 Ribosomal protein S4E; RNA-binding S4; KOW; ; chr04_pseudomolecule_IMGAG_V3 1894712-1891549 F EGN_Mt090430 2011-03-30
Genome Context View View with CoGe 1 AT5G58420.1 4408797 4410081 40S ribosomal protein S4 (RPS4D) | chr5:23619599-23620896 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AT5G07090.1 4408797 4410081 40S ribosomal protein S4 (RPS4B) | chr5:2202410-2203805 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AT2G17360.1 4408803 4410081 40S ribosomal protein S4 (RPS4A) | chr2:7546598-7548138 FORWARD 2011-03-30
Genome Context View View with CoGe 1 AT2G39450.1 4456167 4458729 MTP11; cation transmembrane transporter/ manganese ion transmembrane transporter/ manganese:hydrogen 2011-03-30
Genome Context View View with CoGe 1 Medtr2g114400.1 4532276 4532923 Ribosomal protein L23, N-terminal; Nucleotide-binding, alpha-beta plait chr02_pseudomolecule_IMGAG_V3 2011-03-30
Genome Context View View with CoGe 1 AT3G55280.1 4532276 4532923 RPL23AB (RIBOSOMAL PROTEIN L23AB); RNA binding / nucleotide binding / structural constituent of ribosome 2011-03-30

Database lookup time: 0.0028479099273682 sec

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