• Anonymous
  • Login

Search:  Display ?

Assembly/Version:  Chr:  Start:  End: Display:

GAEVAL analysis of Brachypodium transcript annotations


         How to use this GAEVAL Page
  • from annotation source [ Show results per page ]
  • (Expand) (Collapse)Display Options
    • Move Up
      Move Down
      ASC Annotation
    • Move Up
      Move Down
      NONE WWW links
    • Move Up
      Move Down
      DESC Standard Integrity
    • Move Up
      Move Down
      NONE Custom Integrity
    • Move Up
      Move Down
      DESC Introns Confirmed
    • Move Up
      Move Down
      ASC Intons Unsupported
    • Move Up
      Move Down
      DESC %Coverage
    • Move Up
      Move Down
      NONE 5`UTR Size
    • Move Up
      Move Down
      NONE CDS Size
    • Move Up
      Move Down
      NONE 3`UTR Size
    • Move Up
      Move Down
      NONE Upstream Boundary ExtensionUpstream Extension
    • Move Up
      Move Down
      NONE Downstream Boundary ExtensionDownstream Extension
    • Move Up
      Move Down
      NONE Alternative Splicing / StructureAlternative Splicing
    • Move Up
      Move Down
      NONE Alternative Transcript TerminationAlternative Transcriptional Termination
    • Move Up
      Move Down
      NONE Annotation Fission / SplitingAnnotation Spliting / Fission
    • Move Up
      Move Down
      NONE Annotation Fusion / MergerAnnotation Merger / Fusion
    • Move Up
      Move Down
      NONE Erroneous Annotation OverlapErroneous Annotation Overlap
    • The order of the above items determine their display order (left to right) in the results table
    • Fields with an 'X (NO SORT)' will NOT be used to sort results
    • Numbers in the drop down menu determine the sort order of the displayed results
    • Un-checked fields will not be displayed as columns in the results table
  • Expand CollapseBEST OF SHOW! Annotations
  • (Expand) (Collapse)MOST WANTED! Annotations
  • (Expand) (Collapse)Annotation Integrity Filter
    • Do NOT filter by integrity score!
    • Select annotations with Integrity Scores

      Between and

    • Select annotations with CUSTOM Integrity Scores

      Between and
      CUSTOM Annotation Integrity = ( * alpha) + ( * beta) + ( * delta) + ( * gamma)

  • (Expand) (Collapse)Annotation Support Filter (Intron Support)
    • Do NOT filter by intron support!
    • Select annotations with a percentage of confirmed introns

      Between % and %

    • Select annotations with

      Between and introns confirmed
      AND
      Between and introns unsupported

  • (Expand) (Collapse)Annotation Support Filter (Sequence Coverage)
    • Do NOT filter by sequence coverage!
    • Select annotations with a percent sequence coverage

      Between % and %

  • (Expand) (Collapse)Annotation Support Filter (Boundary Support)
    • Filter by upstream (5') boundary support

      Select 5' boundaries with supported extensions and nucleotides long.

    • Filter by downstream (3') boundary support

      Select 3' boundaries with supported extensions and nucleotides long.

  • (Expand) (Collapse)Annotation Property Filter
    • Filter by the number of annotated introns

      Select annotations with and introns.

    • Filter by the length of the annotated 5'UTR

      Select annotations with 5'UTRs and nucleotides long.

    • Filter by the length of the annotated CDS

      Select annotations with CDSs and nucleotides long.

    • Filter by the length of the annotated 3'UTR

      Select annotations with 3'UTRs and nucleotides long.

    • Filter by the total spliced length of the annotated gene

      Select annotations with spliced lengths and nucleotides long.

  • (Expand) (Collapse)Annotation Incongruence Filter
    • Alternative splicing / structure filter

      Show ONLY the following types:

      No Incongruence UndocumentedUndocumented
      Documented IsoformsDocumented Isoforms User AnnotationsUser Annotations
      Undocumented & Documented IsoformsUndocumented & Documented Isoforms Undocumented & User AnnotationsUndocumented & User Annotations
      Isoforms & User AnnotationsIsoforms & User Annotations ALL TypesALL Types
    • Alternative transcript termination (Cleavage / PolyA site) filter

      Show ONLY the following types:

      No Incongruence UndocumentedUndocumented
      Documented IsoformsDocumented Isoforms User AnnotationsUser Annotations
      Undocumented & Documented IsoformsUndocumented & Documented Isoforms Undocumented & User AnnotationsUndocumented & User Annotations
      Isoforms & User AnnotationsIsoforms & User Annotations ALL TypesALL Types
    • Split annotation filter

      Show ONLY the following types:

      No Incongruence UndocumentedUndocumented
      Documented IsoformsDocumented Isoforms User AnnotationsUser Annotations
      Undocumented & Documented IsoformsUndocumented & Documented Isoforms Undocumented & User AnnotationsUndocumented & User Annotations
      Isoforms & User AnnotationsIsoforms & User Annotations ALL TypesALL Types
    • Merged annotation filter

      Show ONLY the following types:

      No Incongruence UndocumentedUndocumented
      Documented IsoformsDocumented Isoforms User AnnotationsUser Annotations
      Undocumented & Documented IsoformsUndocumented & Documented Isoforms Undocumented & User AnnotationsUndocumented & User Annotations
      Isoforms & User AnnotationsIsoforms & User Annotations ALL TypesALL Types
    • Erroneous annotation overlap filter

      Show ONLY the following types:

      No Incongruence UndocumentedUndocumented
      Documented IsoformsDocumented Isoforms User AnnotationsUser Annotations
      Undocumented & Documented IsoformsUndocumented & Documented Isoforms Undocumented & User AnnotationsUndocumented & User Annotations
      Isoforms & User AnnotationsIsoforms & User Annotations ALL TypesALL Types

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!