SiGDB v.0 Loci/Annotations
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| Locus ID |
Gen ome |
Chr | From/To | Len (kb) |
Intron Count |
Str | # Tran |
Locus Description (hover for complete description) |
Gene | Gene Structure Annotation Project | Cov er age  |
Inte grity |
yrGATE Anno Count |
yrGATE Anno Class |
yrGATE Gene Product | Anno Status (click to view) |
Annotate it! |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Si016158m.g | 1 | 10197 13618 |
3.4 | 1 | f | 1 | PF08263,PF00560,PF00069,PF07714 PTHR23258 KOG1187 AT3G47570.1 Leucine-ri... | 0 | |||||||||
| Si018185m.g | 1 | 55108 57492 |
2.4 | 4 | f | 1 | PF11460 AT3G17930.1 LOC_Os01g59080.1 expressed protein... | 0.4 | 0.33 | ||||||||
| Si017130m.g | 1 | 74818 77420 |
2.6 | 2 | f | 2 | PF00097 PTHR23012 AT5G60580.1 RING/U-box superfamily protein LOC_Os06g2... | 0.33 | 0.2 | ||||||||
| Si016761m.g | 1 | 76162 82041 |
5.9 | 10 | r | 2 | PF00085 PTHR18929 KOG0190 5.3.4.1 K09580 AT5G60640.1 ATPDI2,ATPDIL1-4,PDI2,... | 0.8 | 0.89 | ||||||||
| Si020621m.g | 1 | 82225 86187 |
4 | 10 | f | 1 | PF00515,PF07719 PTHR22904 KOG1308 AT3G17880.1 ATHIP2,ATTDX,HIP,TDX tetrat... | 0.94 | 0.96 | ||||||||
| Si018367m.g | 1 | 87278 87927 |
0.6 | 1 | f | 1 | PF03168 AT5G53730.1 Late embryogenesis abundant (LEA) hydroxyproline-r... | 0 | |||||||||
| Si020212m.g | 1 | 88174 89200 |
1 | 4 | f | 1 | LOC_Os07g02910.1 OsFBL33 - F-box domain and LRR containing protein, expres... | 0 | |||||||||
| Si019109m.g | 1 | 91004 92146 |
1.1 | 0 | f | 1 | PF03171 PTHR10209 KOG0143 1.14.11.19 K05277 AT4G22880.1 ANS,LDOX,TDS4,TT18 ... | 0 | |||||||||
| Si019863m.g | 1 | 93571 94596 |
1 | 0 | r | 1 | LOC_Os02g01080.1 expressed protein... | 0 | |||||||||
| Si019050m.g | 1 | 101989 102420 |
0.4 | 0 | r | 1 | PF00096 AT3G23130.1 FLO10,FON1,SUP C2H2 and C2HC zinc fingers superfami... | 0 | |||||||||
| Si019749m.g | 1 | 109759 110626 |
0.9 | 1 | f | 1 | AT5G13620.1 LOC_Os10g10320.1 expressed protein... | 0 | |||||||||
| Si016787m.g | 1 | 110820 114863 |
4 | 11 | r | 1 | PF01490 PTHR22950 KOG1303 AT2G39130.1 Transmembrane amino acid transport... | 0.93 | 0.95 | ||||||||
| Si017542m.g | 1 | 118883 120843 |
2 | 1 | f | 1 | PF00657 PTHR22835:SF27 AT1G75900.1 GDSL-like Lipase/Acylhydrolase super... | 0 | |||||||||
| Si017480m.g | 1 | 120962 123970 |
3 | 9 | r | 1 | PF00389,PF02826 PTHR10996 KOG0069 AT1G68010.1 ATHPR1,HPR hydroxypyruvate ... | 0.91 | 0.95 | ||||||||
| Si018518m.g | 1 | 124098 125815 |
1.7 | 1 | r | 1 | PF03931,PF01466 PTHR11165 KOG1724 K03094 AT5G42190.1 ASK2,SKP1B E3 ubiquit... | 0.44 | 0.2 | ||||||||
| Si016079m.g | 1 | 126273 134923 |
8.7 | 17 | r | 1 | PF00514,PF02985,PF00632 PTHR11254 KOG0170 6.3.2.19 K10590 AT4G38600.1 KAK,U... | 0.55 | 0.57 | ||||||||
| Si020367m.g | 1 | 135769 136391 |
0.6 | 2 | r | 1 | ... | 0.99 | 0.97 | ||||||||
| Si016340m.g | 1 | 136837 143970 |
7.1 | 19 | r | 1 | PF00225 PTHR16012 KOG0242 AT1G20060.1 ATP binding microtubule motor fami... | 0.62 | 0.47 | ||||||||
| Si019569m.g | 1 | 145211 146466 |
1.3 | 2 | f | 1 | PF01190 AT2G16630.1 Pollen Ole e 1 allergen and extensin family protei... | 0.7 | 0.21 | ||||||||
| Si020089m.g | 1 | 147342 148241 |
0.9 | 0 | r | 1 | PF00462 PTHR10168 KOG2824 AT4G10630.1 Glutaredoxin family protein LOC_Os... | 0 | |||||||||
| Si018637m.g | 1 | 153843 157806 |
4 | 7 | f | 5 | PF00581 KOG1530 AT5G66170.3 STR18 sulfurtransferase 18 LOC_Os12g24020.2 ... | 0.6 | 0.75 | ||||||||
| Si016942m.g | 1 | 157892 160818 |
2.9 | 7 | r | 1 | PF00333,PF03719 PTHR13718 KOG2646 AT1G64880.1 Ribosomal protein S5 famil... | 0.49 | 0.71 | ||||||||
| Si018529m.g | 1 | 161039 163461 |
2.4 | 2 | f | 1 | PF00023 PTHR18958 KOG4214 AT5G61230.1 Ankyrin repeat family protein LOC_... | 0.79 | 0.94 | ||||||||
| Si018997m.g | 1 | 162468 163461 |
1 | 0 | r | 1 | ... | 0.56 | 0.5 | ||||||||
| Si018681m.g | 1 | 163959 166013 |
2.1 | 3 | r | 1 | PF01423 PTHR23338 KOG3172 AT1G20580.1 Small nuclear ribonucleoprotein fa... | 0 | |||||||||
| Si016426m.g | 1 | 170727 175345 |
4.6 | 19 | f | 1 | PF01852,PF07059 PTHR12136 AT5G45560.1 Pleckstrin homology (PH) domain-c... | 0 | |||||||||
| Si016700m.g | 1 | 179729 184974 |
5.2 | 14 | f | 2 | PF00118 PTHR11353 KOG0356 AT3G13470.1 TCP-1/cpn60 chaperonin family prot... | 0.83 | 0.85 | ||||||||
| Si016297m.g | 1 | 183949 189251 |
5.3 | 8 | r | 1 | PF00503 PTHR10218 KOG0082 AT1G31930.1 XLG3 extra-large GTP-binding protei... | 0.74 | 0.92 | ||||||||
| Si016141m.g | 1 | 192778 208071 |
15.3 | 34 | f | 2 | PF04563,PF04561,PF04565,PF04566,PF04567,PF00562,PF04560 PTHR20856 KOG0215 2... | 0.49 | 0.5 | ||||||||
| Si020139m.g | 1 | 208091 208552 |
0.5 | 0 | r | 1 | PF04043 AT5G46960.1 Plant invertase/pectin methylesterase inhibitor su... | 0 | |||||||||
| Si020505m.g | 1 | 208556 208834 |
0.3 | 0 | f | 1 | ... | 0 | |||||||||
| Si019263m.g | 1 | 209044 209673 |
0.6 | 0 | r | 1 | PF04043 AT5G46930.1 Plant invertase/pectin methylesterase inhibitor su... | 0 | |||||||||
| Si017606m.g | 1 | 210760 212873 |
2.1 | 4 | r | 1 | PF00892 AT3G30340.1 nodulin MtN21 /EamA-like transporter family protei... | 0 | |||||||||
| Si018430m.g | 1 | 213901 215490 |
1.6 | 2 | r | 2 | PF00347 PTHR11655 KOG3255 K02940 AT1G33140.1 PGY2 Ribosomal protein L6 fam... | 0.85 | 0.91 | ||||||||
| Si017591m.g | 1 | 215930 217883 |
2 | 3 | r | 2 | PF00175 PTHR19384 AT5G66190.1 ATLFNR1,FNR1 ferredoxin-NADP(+)-oxidoreduc... | 0.71 | 0.9 | ||||||||
| Si017621m.g | 1 | 218735 220279 |
1.5 | 5 | f | 1 | PF00892 AT3G30340.1 nodulin MtN21 /EamA-like transporter family protei... | 0.67 | 0.68 | ||||||||
| Si018042m.g | 1 | 224928 225812 |
0.9 | 1 | r | 1 | ... | 0 | |||||||||
| Si019985m.g | 1 | 229378 236527 |
7.1 | 7 | f | 1 | PF00319,PF01486 PTHR11945 KOG0014 AT2G45660.1 AGL20,ATSOC1,SOC1 AGAMOUS-l... | 0.67 | 0.46 | ||||||||
| Si020469m.g | 1 | 230957 231428 |
0.5 | 0 | f | 1 | ... | 0 | |||||||||
| Si016825m.g | 1 | 262053 265876 |
3.8 | 12 | f | 1 | PTHR11089 KOG1249 1.14.13.39 K13427 AT3G47450.2 ATNOA1,ATNOS1,NOA1,NOS1,RIF... | 0.73 | 0.82 | ||||||||
| Si018031m.g | 1 | 266186 269359 |
3.2 | 8 | f | 1 | AT2G45060.1 Uncharacterised conserved protein UCP022280 LOC_Os02g01450.1 ... | 0.42 | 0.43 | ||||||||
| Si018291m.g | 1 | 269573 271738 |
2.2 | 7 | f | 3 | PF00076 PTHR20957 AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family p... | 0.13 | 0.28 | ||||||||
| Si016087m.g | 1 | 272614 279528 |
6.9 | 13 | f | 2 | PTHR13402 AT5G47490.1 RGPR-related LOC_Os02g01490.1 expressed protein... | 0.41 | 0.41 | ||||||||
| Si016850m.g | 1 | 280197 286802 |
6.6 | 17 | f | 1 | PF00364,PF02817,PF00198 PTHR23151 KOG0557 2.3.1.12 K00627 AT1G54220.1 Dihy... | 0.78 | 0.79 | ||||||||
| Si020440m.g | 1 | 282474 282896 |
0.4 | 0 | f | 1 | ... | 0 | |||||||||
| Si017639m.g | 1 | 287952 290424 |
2.5 | 1 | f | 1 | PF00056,PF02866 PTHR11540 KOG1495 1.1.1.27 K00016 AT4G17260.1 Lactate/mala... | 0.41 | 0.8 | ||||||||
| Si019533m.g | 1 | 293768 294826 |
1.1 | 0 | f | 1 | PF00056,PF02866 PTHR11540 KOG1495 1.1.1.27 K00016 AT4G17260.1 Lactate/mala... | 0.37 | 0.71 | ||||||||
| Si016881m.g | 1 | 296071 299282 |
3.2 | 3 | f | 1 | AT5G62390.1 ATBAG7,BAG7 BCL-2-associated athanogene 7 LOC_Os02g01520.1 IQ ... | 0.58 | 0.62 | ||||||||
| Si020653m.g | 1 | 303840 304289 |
0.4 | 0 | r | 1 | ... | 0 | |||||||||
| Si020514m.g | 1 | 304985 305386 |
0.4 | 0 | r | 1 | ... | 0 | |||||||||
| Si016887m.g | 1 | 309764 313288 |
3.5 | 2 | f | 1 | PF00251,PF08244 KOG0228 AT1G62660.1 Glycosyl hydrolases family 32 prote... | 0.79 | 0.94 | ||||||||
| Si019781m.g | 1 | 323951 325186 |
1.2 | 2 | f | 1 | PF07762 LOC_Os01g08650.1 expressed protein... | 0 | |||||||||
| Si019264m.g | 1 | 328769 329544 |
0.8 | 1 | r | 1 | LOC_Os10g36770.1 expressed protein... | 0 | |||||||||
| Si019874m.g | 1 | 331560 332368 |
0.8 | 1 | r | 1 | PF00097 PTHR22764 AT5G47610.1 RING/U-box superfamily protein LOC_Os04g3... | 0 | |||||||||
| Si018045m.g | 1 | 343207 346471 |
3.3 | 6 | r | 2 | PF04751 PTHR16012:SF56 AT4G24175.1 LOC_Os04g24410.1 kinesin heavy cha... | 0.67 | 0.69 | ||||||||
| Si017361m.g | 1 | 347631 351455 |
3.8 | 6 | f | 1 | PF07910 KOG4696 AT5G24680.1 Peptidase C78, ubiquitin fold modifier-spec... | 0 | 0.05 | ||||||||
| Si020531m.g | 1 | 350736 351024 |
0.3 | 0 | f | 1 | ... | 1 | 0.49 | ||||||||
| Si017635m.g | 1 | 352587 356810 |
4.2 | 9 | f | 1 | PF07851 PTHR21433 KOG4758 AT1G33230.1 TMPIT-like protein LOC_Os02g01720.... | 0.84 | 0.91 | ||||||||
| Si017456m.g | 1 | 357554 359628 |
2.1 | 1 | r | 1 | PF00069,PF07714 PTHR23258 KOG1187 AT1G33260.1 Protein kinase superfamily... | 0 | |||||||||
| Si016063m.g | 1 | 366658 375263 |
8.6 | 3 | f | 1 | PF00270,PF00271,PF02889,PF04851 PTHR11752 KOG0951 3.6.4.13 K12854 AT1G20960... | 0.62 | 0.64 | ||||||||
| Si017818m.g | 1 | 384615 386665 |
2.1 | 3 | f | 1 | ... | 0 | |||||||||
| Si019160m.g | 1 | 387730 389118 |
1.4 | 0 | r | 1 | PF05633 AT1G63930.1 ROH1 from the Czech 'roh' meaning 'corner' LOC_Os02... | 0.47 | 0.74 | ||||||||
| Si020478m.g | 1 | 391162 391636 |
0.5 | 0 | r | 1 | ... | 0 | |||||||||
| Si016268m.g | 1 | 392156 397951 |
5.8 | 12 | r | 1 | PF02373 PTHR12549 AT1G62310.1 transcription factor jumonji (jmjC) domai... | 0 | |||||||||
| Si016699m.g | 1 | 398780 401904 |
3.1 | 2 | r | 1 | PF07719,PF07721,PF00515 PTHR19959 KOG1840 AT4G10840.1 Tetratricopeptide ... | 0.66 | 0.55 | ||||||||
| Si017406m.g | 1 | 406824 412429 |
5.6 | 5 | f | 2 | ... | 0 | |||||||||
| Si020218m.g | 1 | 417815 421143 |
3.3 | 3 | r | 1 | PF00931 PTHR23155 KOG4658 AT5G35450.1 Disease resistance protein (CC-NBS... | 0 | |||||||||
| Si016712m.g | 1 | 421957 425592 |
3.6 | 8 | f | 1 | AT1G28530.2 LOC_Os02g01970.1 expressed protein... | 0 | |||||||||
| Si020439m.g | 1 | 425968 426376 |
0.4 | 0 | r | 1 | ... | 0 | |||||||||
| Si016931m.g | 1 | 436433 440598 |
4.2 | 8 | r | 1 | AT1G28530.2 LOC_Os02g01970.1 expressed protein... | 0 | |||||||||
| Si019113m.g | 1 | 442495 445492 |
3 | 6 | f | 1 | PF00931 PTHR23155:SF28 KOG4658 AT3G46530.1 RPP13 NB-ARC domain-containing... | 0 | |||||||||
| Si019213m.g | 1 | 465460 467800 |
2.3 | 3 | r | 1 | PF00643,PF06203 AT3G21880.1 B-box type zinc finger protein with CCT do... | 0 | |||||||||
| Si019954m.g | 1 | 469413 471548 |
2.1 | 1 | r | 1 | PF08263,PF00560 PTHR23258 KOG0472 AT1G72300.1 Leucine-rich receptor-like... | 0 | |||||||||
| Si019526m.g | 1 | 477019 479572 |
2.6 | 3 | r | 1 | PF00560 PTHR23258 KOG0472 AT1G72300.1 Leucine-rich receptor-like protein... | 0 | |||||||||
| Si020472m.g | 1 | 480404 481198 |
0.8 | 0 | f | 1 | ... | 0 | |||||||||
| Si019751m.g | 1 | 482961 486002 |
3 | 2 | r | 1 | PF08263,PF00560 PTHR23258 KOG0472 AT1G72300.1 Leucine-rich receptor-like... | 0 | |||||||||
| Si016973m.g | 1 | 488910 490951 |
2 | 0 | f | 1 | PTHR19383 4.1.2.- K10528 AT4G15440.1 CYP74B2,HPL1 hydroperoxide lyase 1 LO... | 0 | |||||||||
| Si017987m.g | 1 | 520710 522991 |
2.3 | 2 | r | 1 | PF00249 PTHR10641 KOG0048 AT5G11510.1 AtMYB3R4,MYB3R-4 myb domain protein... | 0 | |||||||||
| Si020517m.g | 1 | 522242 522477 |
0.2 | 0 | f | 1 | ... | 0 | |||||||||
| Si017903m.g | 1 | 525324 527303 |
2 | 2 | r | 1 | PF00249 PTHR10641 KOG0048 AT5G11510.1 AtMYB3R4,MYB3R-4 myb domain protein... | 0.67 | 0.25 | ||||||||
| Si020627m.g | 1 | 527370 529998 |
2.6 | 4 | r | 1 | PTHR10641:SF37 AT4G32730.2 ATMYB3R-1,ATMYB3R1,MYB3R-1,MYB3R1,PC-MYB1 Hom... | 0.87 | 0.77 | ||||||||
| Si018889m.g | 1 | 552954 556095 |
3.1 | 2 | f | 2 | PTHR10795:SF17 LOC_Os02g17150.1 OsSub18 - Putative Subtilisin homolo... | 0 | |||||||||
| Si018882m.g | 1 | 555220 556095 |
0.9 | 0 | r | 1 | ... | 0 | |||||||||
| Si016437m.g | 1 | 566579 570198 |
3.6 | 9 | f | 1 | PF05922,PF00082,PF02225 PTHR10795 AT4G10520.1 Subtilase family protein ... | 0.2 | 0.12 | ||||||||
| Si018581m.g | 1 | 573180 574287 |
1.1 | 2 | f | 1 | PF01221 PTHR11886 KOG3430 AT1G52240.2 ATROPGEF11,PIRF1,ROPGEF11 RHO guany... | 0 | |||||||||
| Si017325m.g | 1 | 593607 598308 |
4.7 | 1 | f | 1 | PF03478 AT2G26160.1 F-box family protein with a domain of unknown func... | 0 | |||||||||
| Si020020m.g | 1 | 595313 596499 |
1.2 | 1 | r | 1 | PF03478 AT5G60060.1 Protein of unknown function (DUF295) ... | 0 | |||||||||
| Si018002m.g | 1 | 608529 614657 |
6.1 | 6 | f | 2 | PF04367 AT2G20120.1 COV1 Protein of unknown function (DUF502) LOC_Os02g... | 0 | |||||||||
| Si018089m.g | 1 | 615741 616872 |
1.1 | 2 | r | 1 | PF03330,PF01357 AT1G20190.1 ATEXP11,ATEXPA11,ATHEXP ALPHA 1.14,EXP11,EX... | 0 | |||||||||
| Si018084m.g | 1 | 620929 622047 |
1.1 | 2 | r | 1 | PF03330,PF01357 AT1G20190.1 ATEXP11,ATEXPA11,ATHEXP ALPHA 1.14,EXP11,EX... | 0 | |||||||||
| Si017105m.g | 1 | 625478 628388 |
2.9 | 5 | f | 1 | PF00400 PTHR19918 KOG0305 K03363 AT4G33270.1 CDC20.1 Transducin family pro... | 0.36 | 0.45 | ||||||||
| Si018142m.g | 1 | 634306 635476 |
1.2 | 1 | r | 1 | PF03330,PF01357 AT1G20190.1 ATEXP11,ATEXPA11,ATHEXP ALPHA 1.14,EXP11,EX... | 0 | |||||||||
| Si017897m.g | 1 | 636241 641241 |
5 | 5 | r | 2 | PF00717,PF10502 PTHR12383 KOG0171 3.4.21.89 K03100 AT3G24590.1 PLSP1 plasti... | 0.69 | 0.74 | ||||||||
| Si016570m.g | 1 | 641577 648235 |
6.7 | 11 | r | 1 | PF01171 PTHR11807 AT3G24560.2 RSY3 Adenine nucleotide alpha hydrolases-l... | 0.57 | 0.55 | ||||||||
| Si017048m.g | 1 | 676263 679614 |
3.4 | 6 | f | 1 | PF00023,PF00004 PTHR18958 AT3G24530.1 AAA-type ATPase family protein / ... | 0.82 | 0.82 | ||||||||
| Si016698m.g | 1 | 681050 684097 |
3 | 1 | r | 1 | PF01535 PTHR10483 AT3G16010.1 Pentatricopeptide repeat (PPR-like) super... | 1 | 0.97 | ||||||||
| Si018264m.g | 1 | 684363 687558 |
3.2 | 4 | f | 1 | PF06220 KOG3454 K11095 AT4G03120.1 C2H2 and C2HC zinc fingers superfamil... | 0.97 | 0.97 | ||||||||
| Si018043m.g | 1 | 687951 690486 |
2.5 | 4 | r | 2 | PF00697 PTHR22854 KOG4202 5.3.1.24 K01817 AT1G07780.1 PAI1,TRP6 phosphoribo... | 0.95 | 0.87 | ||||||||
| Si018225m.g | 1 | 697642 700476 |
2.8 | 4 | r | 2 | PF02453 PTHR10994 KOG1792 AT4G11220.1 BTI2,RTNLB2 VIRB2-interacting prote... | 0.67 | 0.71 | ||||||||
| Si019455m.g | 1 | 704830 705471 |
0.6 | 0 | r | 1 | PF03168 AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-r... | 0 |