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SbGDB v.1 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
Sb01g000200 1 2164
2829
0.7 0 f 1 PF03168 AT4G05220.1 harpin-induced protein-related / HIN1-related / harpin-... 0
Sb01g000210 1 11418
14814
3.4 10 r 1 PF00566 PTHR22957 KOG2197 AT5G54780.1 RAB GTPase activator... 0.91 0.86
Sb01g000220 1 24840
42442
17.6 18 r 1 PF00005,PF01061,PF08370 PTHR19241 KOG0065 AT2G36380.1 PDR6 PDR6; ATPase, co... 0.56 0.4
Sb01g000230 1 60122
63495
3.4 6 f 1 PTHR11260 KOG0867 AT5G41210.1 ATGSTT1 ATGSTT1 (GLUTATHIONE S-TRANSFERASE TH... 0.8 0.84
Sb01g000240 1 63649
69514
5.9 9 r 1 PF00395 AT5G23890.1 unknown protein... 1 1
Sb01g000250 1 79810
81660
1.9 1 f 1 AT1G07330.1 unknown protein... 0
Sb01g000255 1 82098
107334
25.2 4 f 1 AT5G41470.1 unknown protein... 0
Sb01g000260 1 110179
112514
2.3 1 r 1 PF01535 PTHR10483 AT5G52850.1 pentatricopeptide (PPR) repeat-containing pro... 0.56 0.22
Sb01g000270 1 112974
116051
3.1 7 f 1 PF00581 PTHR18838 AT1G17850.1 unknown protein... 0.95 0.94
Sb01g000280 1 116303
136465
20.2 12 r 1 AT5G43310.1 COP1-interacting protein-related... 0.36 0.26
Sb01g000290 1 155165
155581
0.4 1 f 1 ID=PAC:1949304;Name=Sb01g000290.1;PACid=1949304;Parent=Sb01g000290... 0
Sb01g000300 1 156091
162151
6.1 15 r 1 PF08513,PF00400 PTHR22847 KOG0266 AT2G32700.1 LUH WD-40 repeat family prote... 0.37 0.31
Sb01g000310 1 162795
167954
5.2 7 r 1 PF00564,PF07714,PF00069 PTHR23257 KOG0192 AT2G35050.1 protein kinase family... 0.36 0.76
Sb01g000330 1 186074
205207
19.1 35 f 1 PF02736,PF00063,PF00612,PF01843 PTHR13140 KOG0160 K10352 AT1G04160.1 XIB XI... 0
Sb01g000340 1 212148
213606
1.5 1 f 1 PF02458 AT5G39050.1 transferase/ transferase, transferring acyl groups othe... 0.28 0.1
Sb01g000350 1 217569
220331
2.8 1 f 1 PF05922,PF00082,PF02225 PTHR10795 AT2G04160.1 AIR3 AIR3; serine-type endope... 0.75 0.9
Sb01g000352 1 246149
247132
1 0 f 1 PF00847 K09286 AT3G23240.1 ERF1 ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA bind... 0
Sb01g000355 1 251508
255065
3.6 6 r 2 PF04266 PTHR12963 AT2G20410.1 activating signal cointegrator-related... 1 0.98
Sb01g000357 1 259261
259971
0.7 0 f 1 PF00149 PTHR11668 AT2G29400.1 TOPP1 TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1);... 1 0.9
Sb01g000360 1 260203
260729
0.5 0 f 1 ID=PAC:1949315;Name=Sb01g000360.1;PACid=1949315;Parent=Sb01g000360... 0.9 0.61
Sb01g000365 1 261854
264081
2.2 6 r 1 PF04784 PTHR23054 AT5G60720.1 unknown protein... 0
Sb01g000370 1 272642
276458
3.8 10 f 1 PF02338 PTHR12419 KOG2605 AT5G04250.1 OTU-like cysteine protease family pro... 0.93 0.8
Sb01g000380 1 278678
282613
3.9 6 f 1 PF00118 PTHR11353 KOG0356 AT2G28000.1 CPN60A CPN60A (CHAPERONIN-60ALPHA); A... 1 1
Sb01g000390 1 282841
286296
3.5 8 f 5 PF04539,PF04542,PF04545 AT2G36990.1 SIGF SIGF (RNA POLYMERASE SIGMA-SUBUNIT... 0.93 0.88
Sb01g000400 1 291268
298468
7.2 10 f 1 PF00005,PF01061 PTHR19241 KOG0061 AT2G28070.1 ABC transporter family protei... 0
Sb01g000410 1 298658
299952
1.3 1 r 1 PF00403 PTHR22814 KOG1603 AT5G60800.1 heavy-metal-associated domain-contain... 0.81 0.89
Sb01g000420 1 300949
306353
5.4 5 f 1 PF05383 PTHR22792 AT5G66100.1 La domain-containing protein... 0.69 0.41
Sb01g000430 1 310079
311335
1.3 1 f 1 PF00657 PTHR22835:SF27 AT1G75900.1 family II extracellular lipase 3 (EXL3)... 0.27 0.08
Sb01g000440 1 336344
337798
1.5 0 f 1 PF01554 PTHR11206 KOG1347 AT4G22790.1 MATE efflux family protein... 0
Sb01g000446 1 344303
345871
1.6 5 f 1 PF07386 AT3G60810.1 unknown protein... 0
Sb01g000450 1 358631
360187
1.6 1 f 1 PF11961,PF05003 AT5G51670.1 unknown protein... 0
Sb01g000460 1 363231
368612
5.4 9 r 1 PF00400 PTHR22847 KOG2096 AT4G00090.1 transducin family protein / WD-40 rep... 0.93 0.89
Sb01g000470 1 374409
378342
3.9 9 r 1 PF04227 PTHR10584 AT1G50510.1 indigoidine synthase A family protein... 0.14 0.05
Sb01g000480 1 383146
384596
1.5 0 f 1 AT5G42146.1 unknown protein... 1 0.95
Sb01g000490 1 388285
398779
10.5 31 f 1 PF03810,PF08389,PF08767 PTHR11223 KOG2020 AT5G17020.1 XPO1A XPO1A; protein ... 0.65 0.59
Sb01g000500 1 399040
399792
0.8 1 r 1 PF03641 AT5G06300.1 carboxy-lyase... 1 0.35
Sb01g000510 1 406694
410929
4.2 2 f 1 PF05641,PF05266 AT3G62300.1 agenet domain-containing protein... 0.35 0.15
Sb01g000520 1 411383
411989
0.6 1 f 1 AT1G65000.1 unknown protein... 0.11 0.08
Sb01g000530 1 414180
415242
1.1 1 r 1 PF03629 AT3G53010.1 unknown protein... 1 0.35
Sb01g000550 1 420864
422582
1.7 1 f 1 PF03629 AT4G34215.1 hydrolase... 0
Sb01g000560 1 424004
427324
3.3 10 r 1 PF00168 PTHR10774 KOG1030 AT3G61050.1 NTMC2T4 NTMC2T4; lipid binding... 0
Sb01g000570 1 429067
433590
4.5 11 f 3 AT4G22890.1 PGR5-LIKE A PGR5-LIKE A... 1 0.95
Sb01g000580 1 462325
464149
1.8 0 f 1 PF03171 PTHR10209 KOG0143 1.14.11.12 K05282 AT5G51810.1 GA20OX2 GA20OX2 (GI... 0.98 0.99
Sb01g000590 1 536037
537265
1.2 1 r 1 PF02482 AT5G24490.1 30S ribosomal protein, putative... 1 0.35
Sb01g000600 1 537759
544382
6.6 12 r 1 PF00571 PTHR13780 KOG1764 AT1G09020.1 SNF4 SNF4 (HOMOLOG OF YEAST SUCROSE N... 1 1
Sb01g000610 1 553713
555232
1.5 3 f 1 PF00550 PTHR20863 KOG1748 AT3G05020.1 ACP1 ACP1 (acyl carrier protein 1); a... 0
Sb01g000620 1 556154
562376
6.2 10 r 1 PF03731,PF02735,PF03730,PF08785 PTHR12604 KOG2326 K10885 AT1G48050.1 KU80 K... 0.67 0.73
Sb01g000630 1 574735
576396
1.7 4 f 1 PTHR11043 AT1G15370.1 unknown protein... 0.3 0.14
Sb01g000640 1 576932
579463
2.5 1 r 1 PF01535 PTHR10483 AT5G46580.1 pentatricopeptide (PPR) repeat-containing pro... 0.53 0.21
Sb01g000650 1 580090
581169
1.1 0 r 1 PF03171 PTHR10209 KOG0143 AT4G25310.1 oxidoreductase, 2OG-Fe(II) oxygenase ... 0
Sb01g000660 1 583694
584782
1.1 0 r 1 PF03171 PTHR10209 KOG0143 AT4G25300.1 oxidoreductase, 2OG-Fe(II) oxygenase ... 0
Sb01g000670 1 588180
588789
0.6 1 r 1 AT2G18328.1 ATRL4 ATRL4 (ARABIDOPSIS RAD-LIKE 4); DNA binding... 0
Sb01g000680 1 595752
599601
3.8 2 r 1 AT5G42960.1 unknown protein... 0.99 0.95
Sb01g000690 1 600180
601699
1.5 1 r 1 PF00646,PF03478 AT1G57790.1 F-box family protein... 0.71 0.26
Sb01g000696 1 676390
680269
3.9 2 r 1 PF03106 AT1G30650.1 WRKY14 WRKY14; transcription factor... 0
Sb01g000700 1 695565
700955
5.4 6 f 1 PF12174 AT1G32230.1 RCD1 RCD1 (RADICAL-INDUCED CELL DEATH1); protein bindin... 0.99 0.9
Sb01g000710 1 708380
710481
2.1 1 f 1 PF00722,PF06955 AT2G01850.1 EXGT-A3 EXGT-A3; hydrolase, acting on glycosyl ... 0
Sb01g000720 1 716030
722023
6 10 f 1 PF00702 PTHR19288 KOG2882 3.1.3.41 K01101 AT5G47760.1 ATPGLP2 ATPGLP2 (ARAB... 0.68 0.54
Sb01g000730 1 728960
732969
4 1 r 1 PF00447 PTHR10015 KOG0627 AT5G16820.1 HSF3 HSF3 (HEAT SHOCK FACTOR 3); DNA ... 0.88 0.36
Sb01g000740 1 734688
735239
0.6 0 f 1 PF00636 AT1G24450.1 NFD2 NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / r... 0
Sb01g000750 1 736137
738972
2.8 5 r 1 PF00076 PTHR10432 KOG0114 AT5G46840.1 RNA recognition motif (RRM)-containin... 0.48 0.45
Sb01g000760 1 739232
741979
2.7 6 f 1 PF01138,PF03725 PTHR11953 KOG1069 AT3G46210.1 3 exoribonuclease family doma... 0
Sb01g000770 1 743488
747212
3.7 6 f 1 PF01412 PTHR23180 KOG0706 AT4G17890.1 AGD8 AGD8 (ARF-GAP DOMAIN 8); ARF GTP... 0.88 0.86
Sb01g000775 1 748912
749499
0.6 0 r 1 PF06094 PTHR12510 KOG4450 AT3G02910.1 unknown protein... 0
Sb01g000780 1 750321
757442
7.1 16 r 1 PF00400,PF04158 PTHR22851 KOG0268 AT4G28450.1 nucleotide binding / protein ... 1 0.94
Sb01g000790 1 757682
759849
2.2 7 f 1 PTHR13261 KOG3034 AT2G44510.1 p21Cip1-binding protein-related... 0.45 0.39
Sb01g000800 1 763676
767084
3.4 1 f 1 PF01535 PTHR10483 AT4G20090.1 EMB1025 EMB1025 (embryo defective 1025)... 0
Sb01g000810 1 767891
769913
2 1 r 1 PTHR13281 KOG4478 AT2G35790.1 unknown protein... 1 0.97
Sb01g000820 1 769899
773305
3.4 0 f 1 PF07842 PTHR12214 AT5G08550.1 ILP1 ILP1 (increased level of polyploidy1-1D)... 0.33 0.75
Sb01g000830 1 777709
782029
4.3 3 f 1 PTHR21596 AT3G45900.1 unknown protein... 0
Sb01g000840 1 783210
784742
1.5 2 r 1 PF08381 PTHR22870:SF25 AT1G31880.1 BRX BRX (BREVIS RADIX); identical protei... 0
Sb01g000850 1 825951
829043
3.1 4 f 1 PF00753,PF10996,PF07521,PF11718 PTHR11203 KOG1137 AT1G61010.1 CPSF73-I CPSF... 0.66 0.71
Sb01g000860 1 830569
832191
1.6 0 r 1 PF04185 AT3G03530.1 NPC4 NPC4 (NONSPECIFIC PHOSPHOLIPASE C4); hydrolase, ac... 0
Sb01g000870 1 833372
834689
1.3 1 r 1 PF04483 AT3G56830.1 unknown protein... 0
Sb01g000880 1 835277
836745
1.5 1 f 1 AT1G73940.1 unknown protein... 0
Sb01g000890 1 839655
841037
1.4 1 f 1 AT3G45230.1 hydroxyproline-rich glycoprotein family protein... 0.97 0.34
Sb01g000896 1 852557
856948
4.4 2 r 1 ID=PAC:1949388;Name=Sb01g000896.1;PACid=1949388;Parent=Sb01g000896... 0
Sb01g000900 1 858904
865339
6.4 4 r 1 PF00125,PF00808 PTHR10252 AT1G07980.1 NF-YC10 NF-YC10 (NUCLEAR FACTOR Y, SU... 0.89 0.77
Sb01g000910 1 871175
875678
4.5 5 f 2 PF04511 PTHR11009 KOG0858 AT4G04860.1 DER2.2 DER2.2 (DERLIN-2.2)... 1 0.98
Sb01g000920 1 876159
877616
1.5 1 f 1 PF01535,PF07721 PTHR10483 AT1G03510.1 pentatricopeptide (PPR) repeat-contai... 0
Sb01g000930 1 881833
882812
1 1 f 1 AT5G65660.1 hydroxyproline-rich glycoprotein family protein... 1 0.95
Sb01g000940 1 885276
891075
5.8 13 f 1 PF03969 PTHR12169 KOG2383 AT2G25530.1 AFG1-like ATPase family protein... 0.89 0.87
Sb01g000950 1 891889
892629
0.7 0 f 1 PF00125,PF00808 PTHR23430 KOG1756 AT5G59870.1 HTA6 HTA6; DNA binding... 0.75 0.89
Sb01g000960 1 906907
909951
3 5 f 2 PF10539 PTHR23230 AT3G27090.1 unknown protein... 1 0.93
Sb01g000970 1 913946
916383
2.4 3 r 1 PF02569 PTHR21299 KOG3042 6.3.2.1 K01918 AT5G48840.1 PANC PANC (ARABIDOPSIS... 0.52 0.76
Sb01g000980 1 917862
920051
2.2 1 r 1 PF01535 PTHR10483 AT2G35030.1 pentatricopeptide (PPR) repeat-containing pro... 0
Sb01g000990 1 920318
922439
2.1 5 r 1 PF00023 PTHR18958 KOG4214 AT4G35450.1 AKR2 AKR2 (ANKYRIN REPEAT-CONTAINING ... 0.92 0.83
Sb01g001000 1 927837
929704
1.9 1 f 2 AT2G47010.1 unknown protein... 0.85 0.6
Sb01g001010 1 930055
935516
5.5 7 r 1 PF00400 PTHR22850 KOG0265 AT5G50970.1 WD-40 repeat family protein... 0.81 0.72
Sb01g001020 1 936171
938454
2.3 3 r 1 AT5G47870.1 unknown protein... 1 0.97
Sb01g001030 1 942438
944166
1.7 2 r 1 PF07899 AT4G00650.1 FRI FRI (FRIGIDA); protein heterodimerization/ protein ... 0
Sb01g001040 1 945221
949039
3.8 7 r 1 PF00560 PTHR10552 KOG1644 AT1G09760.1 U2A U2A (U2 small nuclear ribonucleop... 1 0.98
Sb01g001050 1 950394
955589
5.2 10 f 1 PF01399 PTHR10855 KOG1498 AT5G09900.1 EMB2107 EMB2107 (EMBRYO DEFECTIVE 210... 1 0.99
Sb01g001060 1 958452
960898
2.4 2 f 1 PF01588 PTHR11946 KOG2241 AT3G59980.1 tRNA-binding region domain-containing... 1 0.97
Sb01g001070 1 961953
965271
3.3 1 r 1 PF00462 PTHR10293 KOG1752 K07390 AT3G54900.1 CXIP1 CXIP1 (CAX INTERACTING P... 0.98 0.96
Sb01g001080 1 965473
969713
4.2 11 f 1 PF00009,PF03144,PF03143 PTHR23115 KOG0460 3.6.5.3 K02358 AT4G02930.1 elonga... 1 0.98
Sb01g001090 1 994657
996822
2.2 1 f 1 ID=PAC:1949411;Name=Sb01g001090.1;PACid=1949411;Parent=Sb01g001090... 0
Sb01g001100 1 997506
999667
2.2 5 r 1 PF01849 PTHR10351 KOG2240 K01527 AT1G17880.1 nascent polypeptide-associated... 1 0.99
Sb01g001110 1 1002179
1005878
3.7 1 f 1 AT4G14100.1 transferase, transferring glycosyl groups... 1 0.96
Sb01g001120 1 1008931
1012638
3.7 1 f 1 PF03765,PF00650 PTHR10174 KOG1471 AT1G01630.1 SEC14 cytosolic factor, putat... 1 0.96

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