SbGDB v.1 Loci/Annotations
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| Locus ID |
Gen ome |
Chr | From/To | Len (kb) |
Intron Count |
Str | # Tran |
Locus Description (hover for complete description) |
Gene | Gene Structure Annotation Project | Cov er age  |
Inte grity |
yrGATE Anno Count |
yrGATE Anno Class |
yrGATE Gene Product | Anno Status (click to view) |
Annotate it! |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sb01g000200 | 1 | 2164 2829 |
0.7 | 0 | f | 1 | PF03168 AT4G05220.1 harpin-induced protein-related / HIN1-related / harpin-... | 0 | |||||||||
| Sb01g000210 | 1 | 11418 14814 |
3.4 | 10 | r | 1 | PF00566 PTHR22957 KOG2197 AT5G54780.1 RAB GTPase activator... | 0.91 | 0.86 | ||||||||
| Sb01g000220 | 1 | 24840 42442 |
17.6 | 18 | r | 1 | PF00005,PF01061,PF08370 PTHR19241 KOG0065 AT2G36380.1 PDR6 PDR6; ATPase, co... | 0.56 | 0.4 | ||||||||
| Sb01g000230 | 1 | 60122 63495 |
3.4 | 6 | f | 1 | PTHR11260 KOG0867 AT5G41210.1 ATGSTT1 ATGSTT1 (GLUTATHIONE S-TRANSFERASE TH... | 0.8 | 0.84 | ||||||||
| Sb01g000240 | 1 | 63649 69514 |
5.9 | 9 | r | 1 | PF00395 AT5G23890.1 unknown protein... | 1 | 1 | ||||||||
| Sb01g000250 | 1 | 79810 81660 |
1.9 | 1 | f | 1 | AT1G07330.1 unknown protein... | 0 | |||||||||
| Sb01g000255 | 1 | 82098 107334 |
25.2 | 4 | f | 1 | AT5G41470.1 unknown protein... | 0 | |||||||||
| Sb01g000260 | 1 | 110179 112514 |
2.3 | 1 | r | 1 | PF01535 PTHR10483 AT5G52850.1 pentatricopeptide (PPR) repeat-containing pro... | 0.56 | 0.22 | ||||||||
| Sb01g000270 | 1 | 112974 116051 |
3.1 | 7 | f | 1 | PF00581 PTHR18838 AT1G17850.1 unknown protein... | 0.95 | 0.94 | ||||||||
| Sb01g000280 | 1 | 116303 136465 |
20.2 | 12 | r | 1 | AT5G43310.1 COP1-interacting protein-related... | 0.36 | 0.26 | ||||||||
| Sb01g000290 | 1 | 155165 155581 |
0.4 | 1 | f | 1 | ID=PAC:1949304;Name=Sb01g000290.1;PACid=1949304;Parent=Sb01g000290... | 0 | |||||||||
| Sb01g000300 | 1 | 156091 162151 |
6.1 | 15 | r | 1 | PF08513,PF00400 PTHR22847 KOG0266 AT2G32700.1 LUH WD-40 repeat family prote... | 0.37 | 0.31 | ||||||||
| Sb01g000310 | 1 | 162795 167954 |
5.2 | 7 | r | 1 | PF00564,PF07714,PF00069 PTHR23257 KOG0192 AT2G35050.1 protein kinase family... | 0.36 | 0.76 | ||||||||
| Sb01g000330 | 1 | 186074 205207 |
19.1 | 35 | f | 1 | PF02736,PF00063,PF00612,PF01843 PTHR13140 KOG0160 K10352 AT1G04160.1 XIB XI... | 0 | |||||||||
| Sb01g000340 | 1 | 212148 213606 |
1.5 | 1 | f | 1 | PF02458 AT5G39050.1 transferase/ transferase, transferring acyl groups othe... | 0.28 | 0.1 | ||||||||
| Sb01g000350 | 1 | 217569 220331 |
2.8 | 1 | f | 1 | PF05922,PF00082,PF02225 PTHR10795 AT2G04160.1 AIR3 AIR3; serine-type endope... | 0.75 | 0.9 | ||||||||
| Sb01g000352 | 1 | 246149 247132 |
1 | 0 | f | 1 | PF00847 K09286 AT3G23240.1 ERF1 ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA bind... | 0 | |||||||||
| Sb01g000355 | 1 | 251508 255065 |
3.6 | 6 | r | 2 | PF04266 PTHR12963 AT2G20410.1 activating signal cointegrator-related... | 1 | 0.98 | ||||||||
| Sb01g000357 | 1 | 259261 259971 |
0.7 | 0 | f | 1 | PF00149 PTHR11668 AT2G29400.1 TOPP1 TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1);... | 1 | 0.9 | ||||||||
| Sb01g000360 | 1 | 260203 260729 |
0.5 | 0 | f | 1 | ID=PAC:1949315;Name=Sb01g000360.1;PACid=1949315;Parent=Sb01g000360... | 0.9 | 0.61 | ||||||||
| Sb01g000365 | 1 | 261854 264081 |
2.2 | 6 | r | 1 | PF04784 PTHR23054 AT5G60720.1 unknown protein... | 0 | |||||||||
| Sb01g000370 | 1 | 272642 276458 |
3.8 | 10 | f | 1 | PF02338 PTHR12419 KOG2605 AT5G04250.1 OTU-like cysteine protease family pro... | 0.93 | 0.8 | ||||||||
| Sb01g000380 | 1 | 278678 282613 |
3.9 | 6 | f | 1 | PF00118 PTHR11353 KOG0356 AT2G28000.1 CPN60A CPN60A (CHAPERONIN-60ALPHA); A... | 1 | 1 | ||||||||
| Sb01g000390 | 1 | 282841 286296 |
3.5 | 8 | f | 5 | PF04539,PF04542,PF04545 AT2G36990.1 SIGF SIGF (RNA POLYMERASE SIGMA-SUBUNIT... | 0.93 | 0.88 | ||||||||
| Sb01g000400 | 1 | 291268 298468 |
7.2 | 10 | f | 1 | PF00005,PF01061 PTHR19241 KOG0061 AT2G28070.1 ABC transporter family protei... | 0 | |||||||||
| Sb01g000410 | 1 | 298658 299952 |
1.3 | 1 | r | 1 | PF00403 PTHR22814 KOG1603 AT5G60800.1 heavy-metal-associated domain-contain... | 0.81 | 0.89 | ||||||||
| Sb01g000420 | 1 | 300949 306353 |
5.4 | 5 | f | 1 | PF05383 PTHR22792 AT5G66100.1 La domain-containing protein... | 0.69 | 0.41 | ||||||||
| Sb01g000430 | 1 | 310079 311335 |
1.3 | 1 | f | 1 | PF00657 PTHR22835:SF27 AT1G75900.1 family II extracellular lipase 3 (EXL3)... | 0.27 | 0.08 | ||||||||
| Sb01g000440 | 1 | 336344 337798 |
1.5 | 0 | f | 1 | PF01554 PTHR11206 KOG1347 AT4G22790.1 MATE efflux family protein... | 0 | |||||||||
| Sb01g000446 | 1 | 344303 345871 |
1.6 | 5 | f | 1 | PF07386 AT3G60810.1 unknown protein... | 0 | |||||||||
| Sb01g000450 | 1 | 358631 360187 |
1.6 | 1 | f | 1 | PF11961,PF05003 AT5G51670.1 unknown protein... | 0 | |||||||||
| Sb01g000460 | 1 | 363231 368612 |
5.4 | 9 | r | 1 | PF00400 PTHR22847 KOG2096 AT4G00090.1 transducin family protein / WD-40 rep... | 0.93 | 0.89 | ||||||||
| Sb01g000470 | 1 | 374409 378342 |
3.9 | 9 | r | 1 | PF04227 PTHR10584 AT1G50510.1 indigoidine synthase A family protein... | 0.14 | 0.05 | ||||||||
| Sb01g000480 | 1 | 383146 384596 |
1.5 | 0 | f | 1 | AT5G42146.1 unknown protein... | 1 | 0.95 | ||||||||
| Sb01g000490 | 1 | 388285 398779 |
10.5 | 31 | f | 1 | PF03810,PF08389,PF08767 PTHR11223 KOG2020 AT5G17020.1 XPO1A XPO1A; protein ... | 0.65 | 0.59 | ||||||||
| Sb01g000500 | 1 | 399040 399792 |
0.8 | 1 | r | 1 | PF03641 AT5G06300.1 carboxy-lyase... | 1 | 0.35 | ||||||||
| Sb01g000510 | 1 | 406694 410929 |
4.2 | 2 | f | 1 | PF05641,PF05266 AT3G62300.1 agenet domain-containing protein... | 0.35 | 0.15 | ||||||||
| Sb01g000520 | 1 | 411383 411989 |
0.6 | 1 | f | 1 | AT1G65000.1 unknown protein... | 0.11 | 0.08 | ||||||||
| Sb01g000530 | 1 | 414180 415242 |
1.1 | 1 | r | 1 | PF03629 AT3G53010.1 unknown protein... | 1 | 0.35 | ||||||||
| Sb01g000550 | 1 | 420864 422582 |
1.7 | 1 | f | 1 | PF03629 AT4G34215.1 hydrolase... | 0 | |||||||||
| Sb01g000560 | 1 | 424004 427324 |
3.3 | 10 | r | 1 | PF00168 PTHR10774 KOG1030 AT3G61050.1 NTMC2T4 NTMC2T4; lipid binding... | 0 | |||||||||
| Sb01g000570 | 1 | 429067 433590 |
4.5 | 11 | f | 3 | AT4G22890.1 PGR5-LIKE A PGR5-LIKE A... | 1 | 0.95 | ||||||||
| Sb01g000580 | 1 | 462325 464149 |
1.8 | 0 | f | 1 | PF03171 PTHR10209 KOG0143 1.14.11.12 K05282 AT5G51810.1 GA20OX2 GA20OX2 (GI... | 0.98 | 0.99 | ||||||||
| Sb01g000590 | 1 | 536037 537265 |
1.2 | 1 | r | 1 | PF02482 AT5G24490.1 30S ribosomal protein, putative... | 1 | 0.35 | ||||||||
| Sb01g000600 | 1 | 537759 544382 |
6.6 | 12 | r | 1 | PF00571 PTHR13780 KOG1764 AT1G09020.1 SNF4 SNF4 (HOMOLOG OF YEAST SUCROSE N... | 1 | 1 | ||||||||
| Sb01g000610 | 1 | 553713 555232 |
1.5 | 3 | f | 1 | PF00550 PTHR20863 KOG1748 AT3G05020.1 ACP1 ACP1 (acyl carrier protein 1); a... | 0 | |||||||||
| Sb01g000620 | 1 | 556154 562376 |
6.2 | 10 | r | 1 | PF03731,PF02735,PF03730,PF08785 PTHR12604 KOG2326 K10885 AT1G48050.1 KU80 K... | 0.67 | 0.73 | ||||||||
| Sb01g000630 | 1 | 574735 576396 |
1.7 | 4 | f | 1 | PTHR11043 AT1G15370.1 unknown protein... | 0.3 | 0.14 | ||||||||
| Sb01g000640 | 1 | 576932 579463 |
2.5 | 1 | r | 1 | PF01535 PTHR10483 AT5G46580.1 pentatricopeptide (PPR) repeat-containing pro... | 0.53 | 0.21 | ||||||||
| Sb01g000650 | 1 | 580090 581169 |
1.1 | 0 | r | 1 | PF03171 PTHR10209 KOG0143 AT4G25310.1 oxidoreductase, 2OG-Fe(II) oxygenase ... | 0 | |||||||||
| Sb01g000660 | 1 | 583694 584782 |
1.1 | 0 | r | 1 | PF03171 PTHR10209 KOG0143 AT4G25300.1 oxidoreductase, 2OG-Fe(II) oxygenase ... | 0 | |||||||||
| Sb01g000670 | 1 | 588180 588789 |
0.6 | 1 | r | 1 | AT2G18328.1 ATRL4 ATRL4 (ARABIDOPSIS RAD-LIKE 4); DNA binding... | 0 | |||||||||
| Sb01g000680 | 1 | 595752 599601 |
3.8 | 2 | r | 1 | AT5G42960.1 unknown protein... | 0.99 | 0.95 | ||||||||
| Sb01g000690 | 1 | 600180 601699 |
1.5 | 1 | r | 1 | PF00646,PF03478 AT1G57790.1 F-box family protein... | 0.71 | 0.26 | ||||||||
| Sb01g000696 | 1 | 676390 680269 |
3.9 | 2 | r | 1 | PF03106 AT1G30650.1 WRKY14 WRKY14; transcription factor... | 0 | |||||||||
| Sb01g000700 | 1 | 695565 700955 |
5.4 | 6 | f | 1 | PF12174 AT1G32230.1 RCD1 RCD1 (RADICAL-INDUCED CELL DEATH1); protein bindin... | 0.99 | 0.9 | ||||||||
| Sb01g000710 | 1 | 708380 710481 |
2.1 | 1 | f | 1 | PF00722,PF06955 AT2G01850.1 EXGT-A3 EXGT-A3; hydrolase, acting on glycosyl ... | 0 | |||||||||
| Sb01g000720 | 1 | 716030 722023 |
6 | 10 | f | 1 | PF00702 PTHR19288 KOG2882 3.1.3.41 K01101 AT5G47760.1 ATPGLP2 ATPGLP2 (ARAB... | 0.68 | 0.54 | ||||||||
| Sb01g000730 | 1 | 728960 732969 |
4 | 1 | r | 1 | PF00447 PTHR10015 KOG0627 AT5G16820.1 HSF3 HSF3 (HEAT SHOCK FACTOR 3); DNA ... | 0.88 | 0.36 | ||||||||
| Sb01g000740 | 1 | 734688 735239 |
0.6 | 0 | f | 1 | PF00636 AT1G24450.1 NFD2 NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / r... | 0 | |||||||||
| Sb01g000750 | 1 | 736137 738972 |
2.8 | 5 | r | 1 | PF00076 PTHR10432 KOG0114 AT5G46840.1 RNA recognition motif (RRM)-containin... | 0.48 | 0.45 | ||||||||
| Sb01g000760 | 1 | 739232 741979 |
2.7 | 6 | f | 1 | PF01138,PF03725 PTHR11953 KOG1069 AT3G46210.1 3 exoribonuclease family doma... | 0 | |||||||||
| Sb01g000770 | 1 | 743488 747212 |
3.7 | 6 | f | 1 | PF01412 PTHR23180 KOG0706 AT4G17890.1 AGD8 AGD8 (ARF-GAP DOMAIN 8); ARF GTP... | 0.88 | 0.86 | ||||||||
| Sb01g000775 | 1 | 748912 749499 |
0.6 | 0 | r | 1 | PF06094 PTHR12510 KOG4450 AT3G02910.1 unknown protein... | 0 | |||||||||
| Sb01g000780 | 1 | 750321 757442 |
7.1 | 16 | r | 1 | PF00400,PF04158 PTHR22851 KOG0268 AT4G28450.1 nucleotide binding / protein ... | 1 | 0.94 | ||||||||
| Sb01g000790 | 1 | 757682 759849 |
2.2 | 7 | f | 1 | PTHR13261 KOG3034 AT2G44510.1 p21Cip1-binding protein-related... | 0.45 | 0.39 | ||||||||
| Sb01g000800 | 1 | 763676 767084 |
3.4 | 1 | f | 1 | PF01535 PTHR10483 AT4G20090.1 EMB1025 EMB1025 (embryo defective 1025)... | 0 | |||||||||
| Sb01g000810 | 1 | 767891 769913 |
2 | 1 | r | 1 | PTHR13281 KOG4478 AT2G35790.1 unknown protein... | 1 | 0.97 | ||||||||
| Sb01g000820 | 1 | 769899 773305 |
3.4 | 0 | f | 1 | PF07842 PTHR12214 AT5G08550.1 ILP1 ILP1 (increased level of polyploidy1-1D)... | 0.33 | 0.75 | ||||||||
| Sb01g000830 | 1 | 777709 782029 |
4.3 | 3 | f | 1 | PTHR21596 AT3G45900.1 unknown protein... | 0 | |||||||||
| Sb01g000840 | 1 | 783210 784742 |
1.5 | 2 | r | 1 | PF08381 PTHR22870:SF25 AT1G31880.1 BRX BRX (BREVIS RADIX); identical protei... | 0 | |||||||||
| Sb01g000850 | 1 | 825951 829043 |
3.1 | 4 | f | 1 | PF00753,PF10996,PF07521,PF11718 PTHR11203 KOG1137 AT1G61010.1 CPSF73-I CPSF... | 0.66 | 0.71 | ||||||||
| Sb01g000860 | 1 | 830569 832191 |
1.6 | 0 | r | 1 | PF04185 AT3G03530.1 NPC4 NPC4 (NONSPECIFIC PHOSPHOLIPASE C4); hydrolase, ac... | 0 | |||||||||
| Sb01g000870 | 1 | 833372 834689 |
1.3 | 1 | r | 1 | PF04483 AT3G56830.1 unknown protein... | 0 | |||||||||
| Sb01g000880 | 1 | 835277 836745 |
1.5 | 1 | f | 1 | AT1G73940.1 unknown protein... | 0 | |||||||||
| Sb01g000890 | 1 | 839655 841037 |
1.4 | 1 | f | 1 | AT3G45230.1 hydroxyproline-rich glycoprotein family protein... | 0.97 | 0.34 | ||||||||
| Sb01g000896 | 1 | 852557 856948 |
4.4 | 2 | r | 1 | ID=PAC:1949388;Name=Sb01g000896.1;PACid=1949388;Parent=Sb01g000896... | 0 | |||||||||
| Sb01g000900 | 1 | 858904 865339 |
6.4 | 4 | r | 1 | PF00125,PF00808 PTHR10252 AT1G07980.1 NF-YC10 NF-YC10 (NUCLEAR FACTOR Y, SU... | 0.89 | 0.77 | ||||||||
| Sb01g000910 | 1 | 871175 875678 |
4.5 | 5 | f | 2 | PF04511 PTHR11009 KOG0858 AT4G04860.1 DER2.2 DER2.2 (DERLIN-2.2)... | 1 | 0.98 | ||||||||
| Sb01g000920 | 1 | 876159 877616 |
1.5 | 1 | f | 1 | PF01535,PF07721 PTHR10483 AT1G03510.1 pentatricopeptide (PPR) repeat-contai... | 0 | |||||||||
| Sb01g000930 | 1 | 881833 882812 |
1 | 1 | f | 1 | AT5G65660.1 hydroxyproline-rich glycoprotein family protein... | 1 | 0.95 | ||||||||
| Sb01g000940 | 1 | 885276 891075 |
5.8 | 13 | f | 1 | PF03969 PTHR12169 KOG2383 AT2G25530.1 AFG1-like ATPase family protein... | 0.89 | 0.87 | ||||||||
| Sb01g000950 | 1 | 891889 892629 |
0.7 | 0 | f | 1 | PF00125,PF00808 PTHR23430 KOG1756 AT5G59870.1 HTA6 HTA6; DNA binding... | 0.75 | 0.89 | ||||||||
| Sb01g000960 | 1 | 906907 909951 |
3 | 5 | f | 2 | PF10539 PTHR23230 AT3G27090.1 unknown protein... | 1 | 0.93 | ||||||||
| Sb01g000970 | 1 | 913946 916383 |
2.4 | 3 | r | 1 | PF02569 PTHR21299 KOG3042 6.3.2.1 K01918 AT5G48840.1 PANC PANC (ARABIDOPSIS... | 0.52 | 0.76 | ||||||||
| Sb01g000980 | 1 | 917862 920051 |
2.2 | 1 | r | 1 | PF01535 PTHR10483 AT2G35030.1 pentatricopeptide (PPR) repeat-containing pro... | 0 | |||||||||
| Sb01g000990 | 1 | 920318 922439 |
2.1 | 5 | r | 1 | PF00023 PTHR18958 KOG4214 AT4G35450.1 AKR2 AKR2 (ANKYRIN REPEAT-CONTAINING ... | 0.92 | 0.83 | ||||||||
| Sb01g001000 | 1 | 927837 929704 |
1.9 | 1 | f | 2 | AT2G47010.1 unknown protein... | 0.85 | 0.6 | ||||||||
| Sb01g001010 | 1 | 930055 935516 |
5.5 | 7 | r | 1 | PF00400 PTHR22850 KOG0265 AT5G50970.1 WD-40 repeat family protein... | 0.81 | 0.72 | ||||||||
| Sb01g001020 | 1 | 936171 938454 |
2.3 | 3 | r | 1 | AT5G47870.1 unknown protein... | 1 | 0.97 | ||||||||
| Sb01g001030 | 1 | 942438 944166 |
1.7 | 2 | r | 1 | PF07899 AT4G00650.1 FRI FRI (FRIGIDA); protein heterodimerization/ protein ... | 0 | |||||||||
| Sb01g001040 | 1 | 945221 949039 |
3.8 | 7 | r | 1 | PF00560 PTHR10552 KOG1644 AT1G09760.1 U2A U2A (U2 small nuclear ribonucleop... | 1 | 0.98 | ||||||||
| Sb01g001050 | 1 | 950394 955589 |
5.2 | 10 | f | 1 | PF01399 PTHR10855 KOG1498 AT5G09900.1 EMB2107 EMB2107 (EMBRYO DEFECTIVE 210... | 1 | 0.99 | ||||||||
| Sb01g001060 | 1 | 958452 960898 |
2.4 | 2 | f | 1 | PF01588 PTHR11946 KOG2241 AT3G59980.1 tRNA-binding region domain-containing... | 1 | 0.97 | ||||||||
| Sb01g001070 | 1 | 961953 965271 |
3.3 | 1 | r | 1 | PF00462 PTHR10293 KOG1752 K07390 AT3G54900.1 CXIP1 CXIP1 (CAX INTERACTING P... | 0.98 | 0.96 | ||||||||
| Sb01g001080 | 1 | 965473 969713 |
4.2 | 11 | f | 1 | PF00009,PF03144,PF03143 PTHR23115 KOG0460 3.6.5.3 K02358 AT4G02930.1 elonga... | 1 | 0.98 | ||||||||
| Sb01g001090 | 1 | 994657 996822 |
2.2 | 1 | f | 1 | ID=PAC:1949411;Name=Sb01g001090.1;PACid=1949411;Parent=Sb01g001090... | 0 | |||||||||
| Sb01g001100 | 1 | 997506 999667 |
2.2 | 5 | r | 1 | PF01849 PTHR10351 KOG2240 K01527 AT1G17880.1 nascent polypeptide-associated... | 1 | 0.99 | ||||||||
| Sb01g001110 | 1 | 1002179 1005878 |
3.7 | 1 | f | 1 | AT4G14100.1 transferase, transferring glycosyl groups... | 1 | 0.96 | ||||||||
| Sb01g001120 | 1 | 1008931 1012638 |
3.7 | 1 | f | 1 | PF03765,PF00650 PTHR10174 KOG1471 AT1G01630.1 SEC14 cytosolic factor, putat... | 1 | 0.96 |