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RcGDB v.0 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
27371.m000068 27371 142
1809
1.7 3 f 1 mRNA 27371.m000068; Gene 27371.t000001; Note 27371.m000068 ... 0
27371.m000069 27371 6556
7503
0.9 0 r 1 mRNA 27371.m000069; Gene 27371.t000002; Note 27371.m000069 ... 0
27371.m000070 27371 7613
7894
0.3 0 f 1 mRNA 27371.m000070; Gene 27371.t000003; Note 27371.m000070 ... 0
27371.m000071 27371 8018
8754
0.7 1 f 1 PF03695,PF02810... 0
27373.m000100 27373 14345
14910
0.6 1 r 1 mRNA 27373.m000100; Gene 27373.t000001; Note 27373.m000100 ... 0
27374.m000035 27374 121
863
0.7 1 r 1 mRNA 27374.m000035; Gene 27374.t000001; Note 27374.m000035 ... 0
27374.m000036 27374 911
1225
0.3 0 r 1 mRNA 27374.m000036; Gene 27374.t000002; Note 27374.m000036 ... 0
27380.m000065 27380 141
1067
0.9 0 f 1 PF06187... 0
27380.m000066 27380 1106
1369
0.3 0 r 1 mRNA 27380.m000066; Gene 27380.t000002; Note 27380.m000066 ... 0
27380.m000067 27380 1404
2255
0.9 0 f 1 PF01261 PTHR12110... 0
27380.m000068 27380 2287
3267
1 0 f 1 PF01408,PF02894 PTHR22604 KOG2741 AT4G09670.1 Oxidoreductase family prot... 0
27380.m000069 27380 3277
3531
0.3 0 f 1 mRNA 27380.m000069; Gene 27380.t000005; Note 27380.m000069 ... 0
27383.m000156 27383 2439
7118
4.7 8 f 1 PF00121 PTHR21139 KOG1643 5.3.1.1 K01803 AT3G55440.1 TPI triosephosphate is... 0.86 0.92
27383.m000157 27383 12897
15473
2.6 5 f 1 PF00069,PF07714 PTHR23258 KOG1187 AT2G28930.3 PK1B protein kinase 1B... 0
27383.m000158 27383 16621
20277
3.7 9 f 1 PF04055 AT2G39670.1 Radical SAM superfamily protein... 0.99 0.95
27383.m000159 27383 20870
25314
4.4 7 f 1 PF00076 PTHR23147 KOG4207 AT3G55460.1 SCL30 SC35-like splicing factor 30... 0.99 1
27383.m000160 27383 27112
34915
7.8 4 f 1 PF00168 PTHR10024 KOG1030 AT3G55470.1 Calcium-dependent lipid-binding (C... 0
27383.m000161 27383 37523
40529
3 8 f 1 PF04784 PTHR23054 AT2G39690.1 Protein of unknown function, DUF547... 0
27383.m000162 27383 41721
51906
10.2 10 r 1 PF01602,PF02985 PTHR11134 KOG1060 K12397 AT3G55480.2 PAT2 protein affected... 0
27383.m000163 27383 59780
64026
4.2 5 f 1 PF03470,PF03468,PF03469 PTHR21596 KOG3202 AT3G48670.1 IDN2 XH/XS domain-c... 0
27383.m000164 27383 80315
82273
2 2 r 1 PF03330,PF01357 AT3G55500.1 EXPA16 expansin A16... 0.97 0.59
27384.m000046 27384 633
8366
7.7 2 f 1 PF07715... 0
27384.m000047 27384 8450
9064
0.6 0 f 1 mRNA 27384.m000047; Gene 27384.t000003; Note 27384.m000047 ... 0
27386.m000161 27386 69
1758
1.7 3 r 1 mRNA 27386.m000161; Gene 27386.t000001; Note 27386.m000161 ... 0
27386.m000162 27386 1813
2097
0.3 0 f 1 mRNA 27386.m000162; Gene 27386.t000002; Note 27386.m000162 ... 0
27386.m000163 27386 2131
2628
0.5 0 f 1 mRNA 27386.m000163; Gene 27386.t000003; Note 27386.m000163 ... 0
27386.m000164 27386 4819
5553
0.7 0 f 1 mRNA 27386.m000164; Gene 27386.t000004; Note 27386.m000164 ... 0
27386.m000165 27386 6035
6268
0.2 0 f 1 mRNA 27386.m000165; Gene 27386.t000005; Note 27386.m000165 ... 0
27386.m000166 27386 7652
9470
1.8 1 f 1 mRNA 27386.m000166; Gene 27386.t000006; Note 27386.m000166 ... 0
27386.m000167 27386 9509
9688
0.2 0 r 1 mRNA 27386.m000167; Gene 27386.t000007; Note 27386.m000167 ... 0
27386.m000168 27386 9747
10379
0.6 0 f 1 mRNA 27386.m000168; Gene 27386.t000008; Note 27386.m000168 ... 0
27386.m000169 27386 12468
12689
0.2 0 r 1 mRNA 27386.m000169; Gene 27386.t000009; Note 27386.m000169 ... 0
27386.m000170 27386 13150
13983
0.8 0 r 1 mRNA 27386.m000170; Gene 27386.t000010; Note 27386.m000170 ... 0
27389.m000066 27389 6681
7043
0.4 1 f 1 mRNA 27389.m000066; Gene 27389.t000001; Note 27389.m000066 ... 0
27389.m000067 27389 10050
17071
7 12 r 1 PF00097,PF00400 PTHR22847 KOG0297 6.3.2.19 K10143 AT2G32950.1 COP1 Transduc... 0.72 0.57
27389.m000068 27389 19360
20560
1.2 1 r 1 mRNA 27389.m000068; Gene 27389.t000003; Note 27389.m000068 ... 0
27389.m000069 27389 23812
30545
6.7 21 f 1 PF02170,PF02171 PTHR22891 KOG1041 AT2G32940.1 AGO6 Argonaute family prote... 0.11 0.09
27390.m000044 27390 326
1093
0.8 0 r 1 PF09339,PF01022... 0
27390.m000045 27390 1197
1640
0.4 0 r 1 mRNA 27390.m000045; Gene 27390.t000002; Note 27390.m000045 ... 0
27390.m000046 27390 6637
6987
0.4 0 f 1 PF00165 PTHR11019:SF11... 0
27391.m000116 27391 274
816
0.5 0 r 1 PF00583 PTHR23091... 0
27391.m000117 27391 916
1791
0.9 0 r 1 PF00583... 0
27391.m000118 27391 2033
2917
0.9 0 r 1 PF00126,PF03466... 0
27391.m000119 27391 3336
3974
0.6 0 f 1 mRNA 27391.m000119; Gene 27391.t000004; Note 27391.m000119 ... 0
27391.m000120 27391 34886
35872
1 1 f 1 mRNA 27391.m000120; Gene 27391.t000005; Note 27391.m000120 ... 0
27391.m000121 27391 36313
36561
0.2 0 f 1 mRNA 27391.m000121; Gene 27391.t000006; Note 27391.m000121 ... 0
27391.m000122 27391 36759
37088
0.3 0 r 1 mRNA 27391.m000122; Gene 27391.t000007; Note 27391.m000122 ... 0
27391.m000123 27391 37193
37540
0.3 0 r 1 mRNA 27391.m000123; Gene 27391.t000008; Note 27391.m000123 ... 0
27394.m000340 27394 12788
13093
0.3 0 r 1 mRNA 27394.m000340; Gene 27394.t000001; Note 27394.m000340 ... 0
27394.m000341 27394 15689
16683
1 2 f 1 PF03171 PTHR10209 AT5G54000.1 2-oxoglutarate (2OG) and Fe(II)-dependent... 0
27394.m000342 27394 17028
17210
0.2 0 f 1 mRNA 27394.m000342; Gene 27394.t000003; Note 27394.m000342 ... 0
27394.m000343 27394 18241
21033
2.8 1 r 1 PF03807 KOG2380 AT5G34930.1 arogenate dehydrogenase... 0
27394.m000344 27394 22425
27994
5.6 7 r 1 PF03030 3.6.1.1 K01507 AT1G15690.1 AVP1 Inorganic H pyrophosphatase famil... 0.37 0.41
27394.m000345 27394 31165
31410
0.2 0 r 1 mRNA 27394.m000345; Gene 27394.t000006; Note 27394.m000345 ... 0
27394.m000346 27394 36883
39396
2.5 3 f 1 PF00097 AT1G75400.1 RING/U-box superfamily protein... 0
27394.m000347 27394 54071
56679
2.6 7 f 1 PF06925 PTHR21015 2.4.1.46 K03715 AT5G20410.1 MGD2 monogalactosyldiacylgly... 0
27394.m000348 27394 62453
64071
1.6 3 f 1 PF04062 PTHR12391 KOG3155 K05756 AT1G60430.1 ARPC3 actin-related protein C... 0
27394.m000349 27394 66730
70865
4.1 2 f 1 PF02148,PF00443 PTHR10420 KOG1867 AT5G10790.1 UBP22 ubiquitin-specific pr... 0.73 0.3
27394.m000350 27394 71494
74582
3.1 7 r 1 mRNA 27394.m000350; Gene 27394.t000011; Note 27394.m000350 ... 0
27394.m000351 27394 79890
80270
0.4 0 f 1 mRNA 27394.m000351; Gene 27394.t000012; Note 27394.m000351 ... 0
27394.m000352 27394 91600
93831
2.2 0 f 1 PF04548,PF01926,PF11886 PTHR10903 AT5G20300.1 Avirulence induced gene (... 0
27394.m000353 27394 97177
98513
1.3 0 r 1 mRNA 27394.m000353; Gene 27394.t000014; Note 27394.m000353 ... 0.3 0.74
27394.m000354 27394 103446
108969
5.5 8 f 1 PF00149 PTHR22953 KOG1378 AT5G34850.1 PAP26 purple acid phosphatase 26... 0.51 0.45
27394.m000355 27394 109448
110011
0.6 0 r 1 mRNA 27394.m000355; Gene 27394.t000016; Note 27394.m000355 ... 0
27394.m000356 27394 116614
120604
4 9 f 1 PF00149 PTHR22953 KOG1378 AT5G34850.1 PAP26 purple acid phosphatase 26... 0
27394.m000357 27394 123976
131100
7.1 12 r 1 PF00168 PTHR10774 AT1G05500.1 NTMC2T2.1 Calcium-dependent lipid-binding ... 0
27394.m000358 27394 140697
145219
4.5 6 f 1 PF00654,PF00571 PTHR11689 KOG0474 AT5G33280.1 Voltage-gated chloride cha... 0.64 0.53
27394.m000359 27394 150031
150195
0.2 0 f 1 mRNA 27394.m000359; Gene 27394.t000020; Note 27394.m000359 ... 0
27394.m000360 27394 160218
161850
1.6 4 f 1 PF03936 AT4G16740.1 TPS03 terpene synthase 03... 0
27394.m000361 27394 162671
168311
5.6 7 r 1 PF00069,PF07714 PTHR23258 KOG1187 AT2G11520.1 CRCK3 calmodulin-binding re... 0.5 0.46
27395.m000079 27395 358
1084
0.7 2 f 1 PF00886 PTHR12919 AT5G56940.1 Ribosomal protein S16 family protein... 0
27395.m000080 27395 7200
13346
6.1 17 f 1 PF00240,PF00443 PTHR10420 KOG1872 3.1.2.15 K11843 AT3G21280.1 UBP7 ubiquiti... 0
27395.m000081 27395 17001
18038
1 0 r 1 PF02701 AT1G51700.1 DOF1 DOF zinc finger protein 1... 0.8 0.89
27395.m000082 27395 22637
24178
1.5 1 r 1 PF04718 AT2G19680.1 Mitochondrial ATP synthase subunit G protein... 1 0.96
27395.m000083 27395 25300
27839
2.5 5 r 1 mRNA 27395.m000083; Gene 27395.t000005; Note 27395.m000083 ... 0.86 0.79
27397.m000065 27397 9
437
0.4 0 r 1 mRNA 27397.m000065; Gene 27397.t000001; Note 27397.m000065 ... 0
27398.m000132 27398 161
523
0.4 0 f 1 mRNA 27398.m000132; Gene 27398.t000001; Note 27398.m000132 ... 0
27398.m000133 27398 642
1559
0.9 2 f 1 mRNA 27398.m000133; Gene 27398.t000002; Note 27398.m000133 ... 0
27398.m000134 27398 1563
2402
0.8 0 r 1 PF02311,PF07883,PF00165 PTHR11019:SF11... 0
27398.m000135 27398 2458
3039
0.6 0 f 1 mRNA 27398.m000135; Gene 27398.t000004; Note 27398.m000135 ... 0
27398.m000136 27398 6463
8970
2.5 5 r 1 mRNA 27398.m000136; Gene 27398.t000005; Note 27398.m000136 ... 0
27401.m000275 27401 7006
11318
4.3 10 r 1 PF03171 PTHR10209 KOG0143 AT4G16770.1 2-oxoglutarate (2OG) and Fe(II)-de... 0
27401.m000276 27401 13695
20204
6.5 9 r 1 mRNA 27401.m000276; Gene 27401.t000002; Note 27401.m000276 ... 0.27 0.21
27401.m000277 27401 22454
22684
0.2 0 r 1 mRNA 27401.m000277; Gene 27401.t000003; Note 27401.m000277 ... 0
27401.m000278 27401 28990
30465
1.5 2 f 1 PF07797 AT4G17440.1 Protein of unknown function (DUF1639)... 0.96 0.99
27401.m000280 27401 56550
57602
1.1 4 f 1 PF04618,PF00046 PTHR19418 AT4G17460.1 HAT1 Homeobox-leucine zipper prote... 0.36 0.41
27401.m000281 27401 66677
66967
0.3 0 r 1 mRNA 27401.m000281; Gene 27401.t000007; Note 27401.m000281 ... 0
27401.m000282 27401 70950
72647
1.7 0 r 1 mRNA 27401.m000282; Gene 27401.t000008; Note 27401.m000282 ... 0
27401.m000283 27401 85870
87981
2.1 2 f 1 PF01535 PTHR10483 AT5G47360.1 Tetratricopeptide repeat (TPR)-like super... 0
27401.m000284 27401 91749
95116
3.4 5 f 1 PF00782 PTHR10159 KOG1719 AT2G35680.1 Phosphotyrosine protein phosphatas... 1 1
27401.m000285 27401 95632
99287
3.7 10 r 1 PF02089 PTHR11247 KOG2541 3.1.2.22 K01074 AT3G60340.1 alpha/beta-Hydrolase... 0 0
27401.m000286 27401 102476
103749
1.3 1 r 1 mRNA 27401.m000286; Gene 27401.t000012; Note 27401.m000286 ... 0.89 0.92
27401.m000287 27401 105698
109962
4.3 5 r 1 PF05903 PTHR12378 KOG0324 AT5G47310.1 PPPDE putative thiol peptidase fam... 0.87 0.91
27401.m000288 27401 113400
116922
3.5 8 r 1 PF00293 PTHR13994 KOG0648 AT5G47240.1 NUDT8 nudix hydrolase homolog 8... 0
27401.m000289 27401 123132
124877
1.7 3 f 1 mRNA 27401.m000289; Gene 27401.t000015; Note 27401.m000289 ... 0
27401.m000290 27401 126666
132102
5.4 16 r 1 PF00690,PF00122,PF00702 PTHR11939 KOG0202 AT1G80660.1 HA9 H(+)-ATPase 9... 0
27401.m000291 27401 138106
138980
0.9 0 r 1 PF00847 AT5G47230.1 ERF5 ethylene responsive element binding factor 5... 0.97 0.95
27403.m000032 27403 108
924
0.8 1 r 1 mRNA 27403.m000032; Gene 27403.t000001; Note 27403.m000032 ... 0
27404.m000060 27404 36401
37530
1.1 1 f 1 mRNA 27404.m000060; Gene 27404.t000001; Note 27404.m000060 ... 0.73 0.82
27409.m000028 27409 53
1045
1 0 r 1 mRNA 27409.m000028; Gene 27409.t000001; Note 27409.m000028 ... 0

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