RcGDB v.0 Loci/Annotations
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| Locus ID |
Gen ome |
Chr | From/To | Len (kb) |
Intron Count |
Str | # Tran |
Locus Description (hover for complete description) |
Gene | Gene Structure Annotation Project | Cov er age  |
Inte grity |
yrGATE Anno Count |
yrGATE Anno Class |
yrGATE Gene Product | Anno Status (click to view) |
Annotate it! |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27371.m000068 | 27371 | 142 1809 |
1.7 | 3 | f | 1 | mRNA 27371.m000068; Gene 27371.t000001; Note 27371.m000068 ... | 0 | |||||||||
| 27371.m000069 | 27371 | 6556 7503 |
0.9 | 0 | r | 1 | mRNA 27371.m000069; Gene 27371.t000002; Note 27371.m000069 ... | 0 | |||||||||
| 27371.m000070 | 27371 | 7613 7894 |
0.3 | 0 | f | 1 | mRNA 27371.m000070; Gene 27371.t000003; Note 27371.m000070 ... | 0 | |||||||||
| 27371.m000071 | 27371 | 8018 8754 |
0.7 | 1 | f | 1 | PF03695,PF02810... | 0 | |||||||||
| 27373.m000100 | 27373 | 14345 14910 |
0.6 | 1 | r | 1 | mRNA 27373.m000100; Gene 27373.t000001; Note 27373.m000100 ... | 0 | |||||||||
| 27374.m000035 | 27374 | 121 863 |
0.7 | 1 | r | 1 | mRNA 27374.m000035; Gene 27374.t000001; Note 27374.m000035 ... | 0 | |||||||||
| 27374.m000036 | 27374 | 911 1225 |
0.3 | 0 | r | 1 | mRNA 27374.m000036; Gene 27374.t000002; Note 27374.m000036 ... | 0 | |||||||||
| 27380.m000065 | 27380 | 141 1067 |
0.9 | 0 | f | 1 | PF06187... | 0 | |||||||||
| 27380.m000066 | 27380 | 1106 1369 |
0.3 | 0 | r | 1 | mRNA 27380.m000066; Gene 27380.t000002; Note 27380.m000066 ... | 0 | |||||||||
| 27380.m000067 | 27380 | 1404 2255 |
0.9 | 0 | f | 1 | PF01261 PTHR12110... | 0 | |||||||||
| 27380.m000068 | 27380 | 2287 3267 |
1 | 0 | f | 1 | PF01408,PF02894 PTHR22604 KOG2741 AT4G09670.1 Oxidoreductase family prot... | 0 | |||||||||
| 27380.m000069 | 27380 | 3277 3531 |
0.3 | 0 | f | 1 | mRNA 27380.m000069; Gene 27380.t000005; Note 27380.m000069 ... | 0 | |||||||||
| 27383.m000156 | 27383 | 2439 7118 |
4.7 | 8 | f | 1 | PF00121 PTHR21139 KOG1643 5.3.1.1 K01803 AT3G55440.1 TPI triosephosphate is... | 0.86 | 0.92 | ||||||||
| 27383.m000157 | 27383 | 12897 15473 |
2.6 | 5 | f | 1 | PF00069,PF07714 PTHR23258 KOG1187 AT2G28930.3 PK1B protein kinase 1B... | 0 | |||||||||
| 27383.m000158 | 27383 | 16621 20277 |
3.7 | 9 | f | 1 | PF04055 AT2G39670.1 Radical SAM superfamily protein... | 0.99 | 0.95 | ||||||||
| 27383.m000159 | 27383 | 20870 25314 |
4.4 | 7 | f | 1 | PF00076 PTHR23147 KOG4207 AT3G55460.1 SCL30 SC35-like splicing factor 30... | 0.99 | 1 | ||||||||
| 27383.m000160 | 27383 | 27112 34915 |
7.8 | 4 | f | 1 | PF00168 PTHR10024 KOG1030 AT3G55470.1 Calcium-dependent lipid-binding (C... | 0 | |||||||||
| 27383.m000161 | 27383 | 37523 40529 |
3 | 8 | f | 1 | PF04784 PTHR23054 AT2G39690.1 Protein of unknown function, DUF547... | 0 | |||||||||
| 27383.m000162 | 27383 | 41721 51906 |
10.2 | 10 | r | 1 | PF01602,PF02985 PTHR11134 KOG1060 K12397 AT3G55480.2 PAT2 protein affected... | 0 | |||||||||
| 27383.m000163 | 27383 | 59780 64026 |
4.2 | 5 | f | 1 | PF03470,PF03468,PF03469 PTHR21596 KOG3202 AT3G48670.1 IDN2 XH/XS domain-c... | 0 | |||||||||
| 27383.m000164 | 27383 | 80315 82273 |
2 | 2 | r | 1 | PF03330,PF01357 AT3G55500.1 EXPA16 expansin A16... | 0.97 | 0.59 | ||||||||
| 27384.m000046 | 27384 | 633 8366 |
7.7 | 2 | f | 1 | PF07715... | 0 | |||||||||
| 27384.m000047 | 27384 | 8450 9064 |
0.6 | 0 | f | 1 | mRNA 27384.m000047; Gene 27384.t000003; Note 27384.m000047 ... | 0 | |||||||||
| 27386.m000161 | 27386 | 69 1758 |
1.7 | 3 | r | 1 | mRNA 27386.m000161; Gene 27386.t000001; Note 27386.m000161 ... | 0 | |||||||||
| 27386.m000162 | 27386 | 1813 2097 |
0.3 | 0 | f | 1 | mRNA 27386.m000162; Gene 27386.t000002; Note 27386.m000162 ... | 0 | |||||||||
| 27386.m000163 | 27386 | 2131 2628 |
0.5 | 0 | f | 1 | mRNA 27386.m000163; Gene 27386.t000003; Note 27386.m000163 ... | 0 | |||||||||
| 27386.m000164 | 27386 | 4819 5553 |
0.7 | 0 | f | 1 | mRNA 27386.m000164; Gene 27386.t000004; Note 27386.m000164 ... | 0 | |||||||||
| 27386.m000165 | 27386 | 6035 6268 |
0.2 | 0 | f | 1 | mRNA 27386.m000165; Gene 27386.t000005; Note 27386.m000165 ... | 0 | |||||||||
| 27386.m000166 | 27386 | 7652 9470 |
1.8 | 1 | f | 1 | mRNA 27386.m000166; Gene 27386.t000006; Note 27386.m000166 ... | 0 | |||||||||
| 27386.m000167 | 27386 | 9509 9688 |
0.2 | 0 | r | 1 | mRNA 27386.m000167; Gene 27386.t000007; Note 27386.m000167 ... | 0 | |||||||||
| 27386.m000168 | 27386 | 9747 10379 |
0.6 | 0 | f | 1 | mRNA 27386.m000168; Gene 27386.t000008; Note 27386.m000168 ... | 0 | |||||||||
| 27386.m000169 | 27386 | 12468 12689 |
0.2 | 0 | r | 1 | mRNA 27386.m000169; Gene 27386.t000009; Note 27386.m000169 ... | 0 | |||||||||
| 27386.m000170 | 27386 | 13150 13983 |
0.8 | 0 | r | 1 | mRNA 27386.m000170; Gene 27386.t000010; Note 27386.m000170 ... | 0 | |||||||||
| 27389.m000066 | 27389 | 6681 7043 |
0.4 | 1 | f | 1 | mRNA 27389.m000066; Gene 27389.t000001; Note 27389.m000066 ... | 0 | |||||||||
| 27389.m000067 | 27389 | 10050 17071 |
7 | 12 | r | 1 | PF00097,PF00400 PTHR22847 KOG0297 6.3.2.19 K10143 AT2G32950.1 COP1 Transduc... | 0.72 | 0.57 | ||||||||
| 27389.m000068 | 27389 | 19360 20560 |
1.2 | 1 | r | 1 | mRNA 27389.m000068; Gene 27389.t000003; Note 27389.m000068 ... | 0 | |||||||||
| 27389.m000069 | 27389 | 23812 30545 |
6.7 | 21 | f | 1 | PF02170,PF02171 PTHR22891 KOG1041 AT2G32940.1 AGO6 Argonaute family prote... | 0.11 | 0.09 | ||||||||
| 27390.m000044 | 27390 | 326 1093 |
0.8 | 0 | r | 1 | PF09339,PF01022... | 0 | |||||||||
| 27390.m000045 | 27390 | 1197 1640 |
0.4 | 0 | r | 1 | mRNA 27390.m000045; Gene 27390.t000002; Note 27390.m000045 ... | 0 | |||||||||
| 27390.m000046 | 27390 | 6637 6987 |
0.4 | 0 | f | 1 | PF00165 PTHR11019:SF11... | 0 | |||||||||
| 27391.m000116 | 27391 | 274 816 |
0.5 | 0 | r | 1 | PF00583 PTHR23091... | 0 | |||||||||
| 27391.m000117 | 27391 | 916 1791 |
0.9 | 0 | r | 1 | PF00583... | 0 | |||||||||
| 27391.m000118 | 27391 | 2033 2917 |
0.9 | 0 | r | 1 | PF00126,PF03466... | 0 | |||||||||
| 27391.m000119 | 27391 | 3336 3974 |
0.6 | 0 | f | 1 | mRNA 27391.m000119; Gene 27391.t000004; Note 27391.m000119 ... | 0 | |||||||||
| 27391.m000120 | 27391 | 34886 35872 |
1 | 1 | f | 1 | mRNA 27391.m000120; Gene 27391.t000005; Note 27391.m000120 ... | 0 | |||||||||
| 27391.m000121 | 27391 | 36313 36561 |
0.2 | 0 | f | 1 | mRNA 27391.m000121; Gene 27391.t000006; Note 27391.m000121 ... | 0 | |||||||||
| 27391.m000122 | 27391 | 36759 37088 |
0.3 | 0 | r | 1 | mRNA 27391.m000122; Gene 27391.t000007; Note 27391.m000122 ... | 0 | |||||||||
| 27391.m000123 | 27391 | 37193 37540 |
0.3 | 0 | r | 1 | mRNA 27391.m000123; Gene 27391.t000008; Note 27391.m000123 ... | 0 | |||||||||
| 27394.m000340 | 27394 | 12788 13093 |
0.3 | 0 | r | 1 | mRNA 27394.m000340; Gene 27394.t000001; Note 27394.m000340 ... | 0 | |||||||||
| 27394.m000341 | 27394 | 15689 16683 |
1 | 2 | f | 1 | PF03171 PTHR10209 AT5G54000.1 2-oxoglutarate (2OG) and Fe(II)-dependent... | 0 | |||||||||
| 27394.m000342 | 27394 | 17028 17210 |
0.2 | 0 | f | 1 | mRNA 27394.m000342; Gene 27394.t000003; Note 27394.m000342 ... | 0 | |||||||||
| 27394.m000343 | 27394 | 18241 21033 |
2.8 | 1 | r | 1 | PF03807 KOG2380 AT5G34930.1 arogenate dehydrogenase... | 0 | |||||||||
| 27394.m000344 | 27394 | 22425 27994 |
5.6 | 7 | r | 1 | PF03030 3.6.1.1 K01507 AT1G15690.1 AVP1 Inorganic H pyrophosphatase famil... | 0.37 | 0.41 | ||||||||
| 27394.m000345 | 27394 | 31165 31410 |
0.2 | 0 | r | 1 | mRNA 27394.m000345; Gene 27394.t000006; Note 27394.m000345 ... | 0 | |||||||||
| 27394.m000346 | 27394 | 36883 39396 |
2.5 | 3 | f | 1 | PF00097 AT1G75400.1 RING/U-box superfamily protein... | 0 | |||||||||
| 27394.m000347 | 27394 | 54071 56679 |
2.6 | 7 | f | 1 | PF06925 PTHR21015 2.4.1.46 K03715 AT5G20410.1 MGD2 monogalactosyldiacylgly... | 0 | |||||||||
| 27394.m000348 | 27394 | 62453 64071 |
1.6 | 3 | f | 1 | PF04062 PTHR12391 KOG3155 K05756 AT1G60430.1 ARPC3 actin-related protein C... | 0 | |||||||||
| 27394.m000349 | 27394 | 66730 70865 |
4.1 | 2 | f | 1 | PF02148,PF00443 PTHR10420 KOG1867 AT5G10790.1 UBP22 ubiquitin-specific pr... | 0.73 | 0.3 | ||||||||
| 27394.m000350 | 27394 | 71494 74582 |
3.1 | 7 | r | 1 | mRNA 27394.m000350; Gene 27394.t000011; Note 27394.m000350 ... | 0 | |||||||||
| 27394.m000351 | 27394 | 79890 80270 |
0.4 | 0 | f | 1 | mRNA 27394.m000351; Gene 27394.t000012; Note 27394.m000351 ... | 0 | |||||||||
| 27394.m000352 | 27394 | 91600 93831 |
2.2 | 0 | f | 1 | PF04548,PF01926,PF11886 PTHR10903 AT5G20300.1 Avirulence induced gene (... | 0 | |||||||||
| 27394.m000353 | 27394 | 97177 98513 |
1.3 | 0 | r | 1 | mRNA 27394.m000353; Gene 27394.t000014; Note 27394.m000353 ... | 0.3 | 0.74 | ||||||||
| 27394.m000354 | 27394 | 103446 108969 |
5.5 | 8 | f | 1 | PF00149 PTHR22953 KOG1378 AT5G34850.1 PAP26 purple acid phosphatase 26... | 0.51 | 0.45 | ||||||||
| 27394.m000355 | 27394 | 109448 110011 |
0.6 | 0 | r | 1 | mRNA 27394.m000355; Gene 27394.t000016; Note 27394.m000355 ... | 0 | |||||||||
| 27394.m000356 | 27394 | 116614 120604 |
4 | 9 | f | 1 | PF00149 PTHR22953 KOG1378 AT5G34850.1 PAP26 purple acid phosphatase 26... | 0 | |||||||||
| 27394.m000357 | 27394 | 123976 131100 |
7.1 | 12 | r | 1 | PF00168 PTHR10774 AT1G05500.1 NTMC2T2.1 Calcium-dependent lipid-binding ... | 0 | |||||||||
| 27394.m000358 | 27394 | 140697 145219 |
4.5 | 6 | f | 1 | PF00654,PF00571 PTHR11689 KOG0474 AT5G33280.1 Voltage-gated chloride cha... | 0.64 | 0.53 | ||||||||
| 27394.m000359 | 27394 | 150031 150195 |
0.2 | 0 | f | 1 | mRNA 27394.m000359; Gene 27394.t000020; Note 27394.m000359 ... | 0 | |||||||||
| 27394.m000360 | 27394 | 160218 161850 |
1.6 | 4 | f | 1 | PF03936 AT4G16740.1 TPS03 terpene synthase 03... | 0 | |||||||||
| 27394.m000361 | 27394 | 162671 168311 |
5.6 | 7 | r | 1 | PF00069,PF07714 PTHR23258 KOG1187 AT2G11520.1 CRCK3 calmodulin-binding re... | 0.5 | 0.46 | ||||||||
| 27395.m000079 | 27395 | 358 1084 |
0.7 | 2 | f | 1 | PF00886 PTHR12919 AT5G56940.1 Ribosomal protein S16 family protein... | 0 | |||||||||
| 27395.m000080 | 27395 | 7200 13346 |
6.1 | 17 | f | 1 | PF00240,PF00443 PTHR10420 KOG1872 3.1.2.15 K11843 AT3G21280.1 UBP7 ubiquiti... | 0 | |||||||||
| 27395.m000081 | 27395 | 17001 18038 |
1 | 0 | r | 1 | PF02701 AT1G51700.1 DOF1 DOF zinc finger protein 1... | 0.8 | 0.89 | ||||||||
| 27395.m000082 | 27395 | 22637 24178 |
1.5 | 1 | r | 1 | PF04718 AT2G19680.1 Mitochondrial ATP synthase subunit G protein... | 1 | 0.96 | ||||||||
| 27395.m000083 | 27395 | 25300 27839 |
2.5 | 5 | r | 1 | mRNA 27395.m000083; Gene 27395.t000005; Note 27395.m000083 ... | 0.86 | 0.79 | ||||||||
| 27397.m000065 | 27397 | 9 437 |
0.4 | 0 | r | 1 | mRNA 27397.m000065; Gene 27397.t000001; Note 27397.m000065 ... | 0 | |||||||||
| 27398.m000132 | 27398 | 161 523 |
0.4 | 0 | f | 1 | mRNA 27398.m000132; Gene 27398.t000001; Note 27398.m000132 ... | 0 | |||||||||
| 27398.m000133 | 27398 | 642 1559 |
0.9 | 2 | f | 1 | mRNA 27398.m000133; Gene 27398.t000002; Note 27398.m000133 ... | 0 | |||||||||
| 27398.m000134 | 27398 | 1563 2402 |
0.8 | 0 | r | 1 | PF02311,PF07883,PF00165 PTHR11019:SF11... | 0 | |||||||||
| 27398.m000135 | 27398 | 2458 3039 |
0.6 | 0 | f | 1 | mRNA 27398.m000135; Gene 27398.t000004; Note 27398.m000135 ... | 0 | |||||||||
| 27398.m000136 | 27398 | 6463 8970 |
2.5 | 5 | r | 1 | mRNA 27398.m000136; Gene 27398.t000005; Note 27398.m000136 ... | 0 | |||||||||
| 27401.m000275 | 27401 | 7006 11318 |
4.3 | 10 | r | 1 | PF03171 PTHR10209 KOG0143 AT4G16770.1 2-oxoglutarate (2OG) and Fe(II)-de... | 0 | |||||||||
| 27401.m000276 | 27401 | 13695 20204 |
6.5 | 9 | r | 1 | mRNA 27401.m000276; Gene 27401.t000002; Note 27401.m000276 ... | 0.27 | 0.21 | ||||||||
| 27401.m000277 | 27401 | 22454 22684 |
0.2 | 0 | r | 1 | mRNA 27401.m000277; Gene 27401.t000003; Note 27401.m000277 ... | 0 | |||||||||
| 27401.m000278 | 27401 | 28990 30465 |
1.5 | 2 | f | 1 | PF07797 AT4G17440.1 Protein of unknown function (DUF1639)... | 0.96 | 0.99 | ||||||||
| 27401.m000280 | 27401 | 56550 57602 |
1.1 | 4 | f | 1 | PF04618,PF00046 PTHR19418 AT4G17460.1 HAT1 Homeobox-leucine zipper prote... | 0.36 | 0.41 | ||||||||
| 27401.m000281 | 27401 | 66677 66967 |
0.3 | 0 | r | 1 | mRNA 27401.m000281; Gene 27401.t000007; Note 27401.m000281 ... | 0 | |||||||||
| 27401.m000282 | 27401 | 70950 72647 |
1.7 | 0 | r | 1 | mRNA 27401.m000282; Gene 27401.t000008; Note 27401.m000282 ... | 0 | |||||||||
| 27401.m000283 | 27401 | 85870 87981 |
2.1 | 2 | f | 1 | PF01535 PTHR10483 AT5G47360.1 Tetratricopeptide repeat (TPR)-like super... | 0 | |||||||||
| 27401.m000284 | 27401 | 91749 95116 |
3.4 | 5 | f | 1 | PF00782 PTHR10159 KOG1719 AT2G35680.1 Phosphotyrosine protein phosphatas... | 1 | 1 | ||||||||
| 27401.m000285 | 27401 | 95632 99287 |
3.7 | 10 | r | 1 | PF02089 PTHR11247 KOG2541 3.1.2.22 K01074 AT3G60340.1 alpha/beta-Hydrolase... | 0 | 0 | ||||||||
| 27401.m000286 | 27401 | 102476 103749 |
1.3 | 1 | r | 1 | mRNA 27401.m000286; Gene 27401.t000012; Note 27401.m000286 ... | 0.89 | 0.92 | ||||||||
| 27401.m000287 | 27401 | 105698 109962 |
4.3 | 5 | r | 1 | PF05903 PTHR12378 KOG0324 AT5G47310.1 PPPDE putative thiol peptidase fam... | 0.87 | 0.91 | ||||||||
| 27401.m000288 | 27401 | 113400 116922 |
3.5 | 8 | r | 1 | PF00293 PTHR13994 KOG0648 AT5G47240.1 NUDT8 nudix hydrolase homolog 8... | 0 | |||||||||
| 27401.m000289 | 27401 | 123132 124877 |
1.7 | 3 | f | 1 | mRNA 27401.m000289; Gene 27401.t000015; Note 27401.m000289 ... | 0 | |||||||||
| 27401.m000290 | 27401 | 126666 132102 |
5.4 | 16 | r | 1 | PF00690,PF00122,PF00702 PTHR11939 KOG0202 AT1G80660.1 HA9 H(+)-ATPase 9... | 0 | |||||||||
| 27401.m000291 | 27401 | 138106 138980 |
0.9 | 0 | r | 1 | PF00847 AT5G47230.1 ERF5 ethylene responsive element binding factor 5... | 0.97 | 0.95 | ||||||||
| 27403.m000032 | 27403 | 108 924 |
0.8 | 1 | r | 1 | mRNA 27403.m000032; Gene 27403.t000001; Note 27403.m000032 ... | 0 | |||||||||
| 27404.m000060 | 27404 | 36401 37530 |
1.1 | 1 | f | 1 | mRNA 27404.m000060; Gene 27404.t000001; Note 27404.m000060 ... | 0.73 | 0.82 | ||||||||
| 27409.m000028 | 27409 | 53 1045 |
1 | 0 | r | 1 | mRNA 27409.m000028; Gene 27409.t000001; Note 27409.m000028 ... | 0 |