PeGDB v.0 Loci/Annotations
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| Locus ID |
Gen ome |
Chr | From/To | Len (kb) |
Intron Count |
Str | # Tran |
Locus Description (hover for complete description) |
Gene | Gene Structure Annotation Project | Cov er age  |
Inte grity |
yrGATE Anno Count |
yrGATE Anno Class |
yrGATE Gene Product | Anno Status (click to view) |
Annotate it! |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ppa023343m | 1 | 40478 51313 |
10.8 | 12 | f | 1 | PF03810 PTHR10997 AT3G08960.1 binding / protein transporter... | 0.13 | 0.04 | ||||||||
| ppa017353m | 1 | 42268 42585 |
0.3 | 0 | r | 1 | PF02519 AT5G10990.1 auxin-responsive family protein... | 0 | |||||||||
| ppa017302m | 1 | 57662 58873 |
1.2 | 1 | f | 1 | ID=PAC:17642965;Name=ppa017302m;PACid=17642965;Parent=ppa017302m.g... | 0 | |||||||||
| ppa011557m | 1 | 71553 73413 |
1.9 | 2 | f | 1 | PTHR13832 AT4G28400.1 protein phosphatase 2C, putative / PP2C, putative... | 0.98 | 0.89 | ||||||||
| ppa019759m | 1 | 79815 81598 |
1.8 | 1 | r | 1 | PF08263,PF00560 PTHR23258 AT1G62440.1 LRX2 LRX2 (LEUCINE-RICH REPEAT/EXTENS... | 0 | |||||||||
| ppa011509m | 1 | 89930 94937 |
5 | 5 | r | 1 | AT1G75340.1 zinc finger (CCCH-type) family protein... | 0.96 | 0.77 | ||||||||
| ppa019610m | 1 | 100915 103055 |
2.1 | 5 | f | 1 | PF00076 PTHR23099 AT5G58130.1 RNA recognition motif (RRM)-containing protei... | 0 | |||||||||
| ppa011541m | 1 | 112707 117928 |
5.2 | 5 | r | 1 | PF09229 PTHR13009 AT5G58110.1 ATPase activator/ chaperone binding... | 0 | 0 | ||||||||
| ppa025999m | 1 | 142245 151312 |
9.1 | 12 | f | 1 | AT5G58100.1 unknown protein... | 0 | 0 | ||||||||
| ppa004493m | 1 | 154211 162006 |
7.8 | 11 | f | 1 | AT5G58100.1 unknown protein... | 0.47 | 0.36 | ||||||||
| ppa004964m | 1 | 179783 183519 |
3.7 | 1 | f | 1 | PF00332,PF07983 AT5G58090.1 glycosyl hydrolase family 17 protein... | 0.11 | 0.03 | ||||||||
| ppa006326m | 1 | 185226 190692 |
5.5 | 1 | f | 1 | PF07714,PF00069 PTHR23257 KOG0192 AT4G31170.1 protein kinase family protein... | 0.96 | 0.89 | ||||||||
| ppa006319m | 1 | 192259 199004 |
6.7 | 1 | f | 1 | PF07714,PF00069 PTHR23257 KOG0192 AT4G31170.1 protein kinase family protein... | 1 | 0.9 | ||||||||
| ppa013576m | 1 | 200448 201257 |
0.8 | 1 | f | 1 | ID=PAC:17645692;Name=ppa013576m;PACid=17645692;Parent=ppa013576m.g... | 0 | |||||||||
| ppa021173m | 1 | 209594 210095 |
0.5 | 2 | f | 1 | PF00403 PTHR22814 KOG1603 AT3G56891.1 metal ion binding... | 0 | |||||||||
| ppa018370m | 1 | 210547 212298 |
1.8 | 1 | f | 1 | PF01535 PTHR10483 AT2G20540.1 pentatricopeptide (PPR) repeat-containing pro... | 0 | |||||||||
| ppa017280m | 1 | 213972 214523 |
0.6 | 0 | r | 1 | PF00847 AT4G31060.1 AP2 domain-containing transcription factor, putative... | 0 | |||||||||
| ppa026608m | 1 | 215880 216248 |
0.4 | 1 | r | 1 | PF00366 PTHR10744 KOG1740 K02961 AT1G49400.1 emb1129 emb1129 (embryo defect... | 0 | |||||||||
| ppa019899m | 1 | 217917 218876 |
1 | 2 | f | 1 | PF10551 AT4G38180.1 FRS5 FRS5 (FAR1-related sequence 5); zinc ion binding... | 0 | |||||||||
| ppa006489m | 1 | 224997 232681 |
7.7 | 6 | f | 1 | PF03040 AT4G31040.1 proton extrusion protein-related... | 0.53 | 0.66 | ||||||||
| ppa022157m | 1 | 234247 236385 |
2.1 | 2 | r | 1 | PF01535 PTHR10483 AT3G16890.1 PPR40 PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN P... | 0 | |||||||||
| ppa002677m | 1 | 249809 256506 |
6.7 | 7 | f | 1 | PF04146 PTHR12357 KOG1901 AT3G13060.2 ECT5 unknown protein... | 0 | |||||||||
| ppa004988m | 1 | 259130 261706 |
2.6 | 3 | r | 1 | PF00067 PTHR19383 KOG0157 AT5G36110.1 CYP716A1 CYP716A1; electron carrier/ ... | 0.79 | 0.84 | ||||||||
| ppa025507m | 1 | 277129 282308 |
5.2 | 16 | f | 1 | PF00432 KOG0497 AT2G07050.1 CAS1 CAS1 (cycloartenol synthase 1); cycloarten... | 0 | |||||||||
| ppa001512m | 1 | 288975 298573 |
9.6 | 12 | f | 1 | PF03109 PTHR10566 KOG1235 K08869 AT3G24190.1 ABC1 family protein... | 0.36 | 0.36 | ||||||||
| ppa019422m | 1 | 299037 300453 |
1.4 | 1 | f | 1 | ID=PAC:17640559;Name=ppa019422m;PACid=17640559;Parent=ppa019422m.g... | 0 | |||||||||
| ppa002609m | 1 | 303669 309654 |
6 | 1 | r | 1 | PF00023,PF11904 PTHR12447 KOG0522 AT1G04780.1 ankyrin repeat family protein... | 0.41 | 0.12 | ||||||||
| ppa006888m | 1 | 312780 314924 |
2.1 | 1 | r | 1 | PF00195,PF02797 2.3.1.74 K00660 AT5G13930.1 TT4 TT4 (TRANSPARENT TESTA 4); ... | 0.79 | 0.84 | ||||||||
| ppa006899m | 1 | 320088 321562 |
1.5 | 1 | r | 1 | PF00195,PF02797 2.3.1.74 K00660 AT5G13930.1 TT4 TT4 (TRANSPARENT TESTA 4); ... | 0.51 | 0.75 | ||||||||
| ppa002982m | 1 | 333005 340422 |
7.4 | 13 | f | 1 | PF00920 PTHR21000 KOG2448 4.2.1.9 K01687 AT3G23940.1 dehydratase family... | 0.49 | 0.28 | ||||||||
| ppa001636m | 1 | 345757 351916 |
6.2 | 7 | f | 1 | PF00097 PTHR22765 AT1G04790.1 zinc finger (C3HC4-type RING finger) family p... | 0.4 | 0.55 | ||||||||
| ppa005421m | 1 | 353788 357524 |
3.7 | 13 | r | 1 | PF00108,PF02803 PTHR18919 KOG1389 2.3.1.16 K00632 AT2G33150.1 PKT3 PKT3 (PE... | 1 | 0.9 | ||||||||
| ppa006057m | 1 | 353788 357524 |
3.7 | 12 | r | 1 | PF00108,PF02803 PTHR18919 KOG1389 AT2G33150.1 PKT3 PKT3 (PEROXISOMAL 3-KETO... | 1 | 0.9 | ||||||||
| ppa011188m | 1 | 360157 362554 |
2.4 | 4 | r | 1 | PF00957 PTHR21136 KOG0859 K08511 AT1G04760.1 ATVAMP726 ATVAMP726... | 0.05 | 0.01 | ||||||||
| ppa000644m | 1 | 363484 367698 |
4.2 | 6 | r | 1 | PF03552 AT2G33100.1 ATCSLD1 ATCSLD1; cellulose synthase/ transferase, trans... | 0 | |||||||||
| ppa027232m | 1 | 368596 46853355 |
46484.8 | 13 | f | 320 | AT2G26040.1 Bet v I allergen family protein... | 0.2 | 0.3 | ||||||||
| ppa012404m | 1 | 370865 372350 |
1.5 | 2 | r | 1 | PF00646 AT5G24560.1 AtPP2-B12 AtPP2-B12 (Phloem protein 2-B12); carbohydrat... | 1 | 0.9 | ||||||||
| ppa010122m | 1 | 374754 376502 |
1.7 | 2 | r | 1 | PF00646 AT5G24560.1 AtPP2-B12 AtPP2-B12 (Phloem protein 2-B12); carbohydrat... | 1 | 0.9 | ||||||||
| ppa019418m | 1 | 379846 380327 |
0.5 | 1 | f | 1 | PF07802 AT1G14060.1 unknown protein... | 0 | |||||||||
| ppa014947m | 1 | 391737 394718 |
3 | 2 | r | 1 | PF02985 PTHR10527 AT5G19820.1 emb2734 emb2734 (embryo defective 2734); bind... | 0 | |||||||||
| ppa015326m | 1 | 397471 400086 |
2.6 | 2 | f | 1 | AT4G13690.1 unknown protein... | 0.24 | 0.07 | ||||||||
| ppa025283m | 1 | 401212 402465 |
1.3 | 1 | r | 1 | PF00646 AT1G69090.1 F-box family protein... | 0 | |||||||||
| ppa001907m | 1 | 403847 406351 |
2.5 | 1 | f | 1 | PF02151 AT5G25070.1 unknown protein... | 0.37 | 0.11 | ||||||||
| ppa002726m | 1 | 407254 415890 |
8.6 | 14 | r | 1 | PTHR21650:SF4 KOG2092 AT1G60995.1 unknown protein... | 0.36 | 0.24 | ||||||||
| ppa001012m | 1 | 419483 429644 |
10.2 | 17 | f | 1 | PF04685,PF12215 PTHR12654 KOG2119 AT3G24180.1 catalytic/ glucosylceramidase... | 0.78 | 0.66 | ||||||||
| ppa004670m | 1 | 430691 440922 |
10.2 | 15 | f | 1 | PF07992,PF00070,PF02852 PTHR22912 KOG0405 AT3G24170.1 ATGR1 ATGR1 (glutathi... | 1 | 0.9 | ||||||||
| ppa004673m | 1 | 430691 440922 |
10.2 | 15 | f | 1 | PF07992,PF00070,PF02852 PTHR22912 KOG0405 AT3G24170.1 ATGR1 ATGR1 (glutathi... | 1 | 0.9 | ||||||||
| ppa026896m | 1 | 442290 444865 |
2.6 | 5 | r | 1 | PF01471,PF00684 AT4G13670.1 PTAC5 PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)... | 0 | |||||||||
| ppa007280m | 1 | 446729 451149 |
4.4 | 10 | r | 1 | AT3G24160.1 PMP PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)... | 1 | 0.9 | ||||||||
| ppa007289m | 1 | 446729 451149 |
4.4 | 10 | r | 1 | AT3G24160.1 PMP PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)... | 1 | 0.9 | ||||||||
| ppa007334m | 1 | 446729 451149 |
4.4 | 10 | r | 1 | AT3G24160.1 PMP PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)... | 1 | 0.9 | ||||||||
| ppa022746m | 1 | 458433 464664 |
6.2 | 14 | f | 1 | PF00400 PTHR22847 KOG0266 AT2G32700.6 LUH WD-40 repeat family protein... | 0 | |||||||||
| ppa015850m | 1 | 460392 460869 |
0.5 | 2 | r | 1 | AT5G01300.1 phosphatidylethanolamine-binding family protein... | 0 | |||||||||
| ppa015929m | 1 | 465801 466019 |
0.2 | 0 | f | 1 | ID=PAC:17649568;Name=ppa015929m;PACid=17649568;Parent=ppa015929m.g... | 0 | |||||||||
| ppa017493m | 1 | 469909 470289 |
0.4 | 0 | f | 1 | ID=PAC:17643928;Name=ppa017493m;PACid=17643928;Parent=ppa017493m.g... | 0 | |||||||||
| ppa001706m | 1 | 492379 501034 |
8.7 | 16 | f | 1 | PF08513,PF00400 PTHR22847 KOG0266 AT2G32700.6 LUH WD-40 repeat family prote... | 0.65 | 0.53 | ||||||||
| ppa021972m | 1 | 501840 502961 |
1.1 | 1 | r | 1 | AT5G07900.1 mitochondrial transcription termination factor family protein /... | 0 | |||||||||
| ppa015555m | 1 | 512207 515001 |
2.8 | 2 | f | 1 | ID=PAC:17665583;Name=ppa015555m;PACid=17665583;Parent=ppa015555m.g... | 0 | |||||||||
| ppa007609m | 1 | 519185 520413 |
1.2 | 1 | r | 1 | PF02536 KOG1267 AT5G07900.1 mitochondrial transcription termination factor ... | 0.53 | 0.16 | ||||||||
| ppa018267m | 1 | 524048 525944 |
1.9 | 4 | r | 1 | PF03732,PF00098 PTHR10178:SF12 ... | 0.19 | 0.06 | ||||||||
| ppa008328m | 1 | 527550 529824 |
2.3 | 3 | f | 1 | PF00097,PF00569 PTHR15898 KOG4582 AT3G24800.1 PRT1 PRT1 (PROTEOLYSIS 1); ub... | 0.28 | 0.48 | ||||||||
| ppa010514m | 1 | 535243 538540 |
3.3 | 2 | f | 1 | PF02234 PTHR10265 AT5G48820.1 ICK6 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-D... | 0.53 | 0.76 | ||||||||
| ppa013221m | 1 | 542219 545803 |
3.6 | 2 | r | 1 | PF00173 PTHR19359 KOG0537 AT2G32720.1 CB5-B CB5-B (CYTOCHROME B5 ISOFORM B)... | 1 | 0.9 | ||||||||
| ppa000699m | 1 | 550737 557224 |
6.5 | 12 | f | 1 | PF01851 PTHR10943 KOG2062 K03032 AT2G32730.1 26S proteasome regulatory subu... | 0.63 | 0.49 | ||||||||
| ppa020429m | 1 | 559213 560704 |
1.5 | 2 | f | 1 | PF00010 PTHR12565:SF7 AT3G24140.1 FMA FMA (FAMA); DNA binding / transcripti... | 0 | |||||||||
| ppa011551m | 1 | 562746 565000 |
2.3 | 3 | f | 1 | PF00572 PTHR11545 KOG3204 K02872 AT5G48760.1 60S ribosomal protein L13A (RP... | 1 | 0.9 | ||||||||
| ppa012026m | 1 | 562746 564287 |
1.5 | 2 | f | 1 | PF00572 PTHR11545 KOG3204 AT5G48760.1 60S ribosomal protein L13A (RPL13aD)... | 1 | 0.9 | ||||||||
| ppa020682m | 1 | 567987 570525 |
2.5 | 4 | f | 1 | PF01095 AT3G24130.1 pectinesterase family protein... | 0 | |||||||||
| ppa012985m | 1 | 578694 581153 |
2.5 | 4 | r | 1 | AT1G04900.1 unknown protein... | 0 | |||||||||
| ppa007491m | 1 | 586238 590934 |
4.7 | 7 | f | 1 | PF00249 AT4G13640.1 UNE16 UNE16 (unfertilized embryo sac 16); transcription... | 0.27 | 0.08 | ||||||||
| ppa010393m | 1 | 594867 596910 |
2 | 4 | f | 1 | PF00036 PTHR10891 KOG0027 AT3G24110.1 calcium-binding EF hand family protei... | 0 | |||||||||
| ppa001427m | 1 | 597425 600122 |
2.7 | 0 | r | 1 | PF00069,PF07714 PTHR23258 KOG1187 AT2G32800.1 AP4.3A AP4.3A; ATP binding / ... | 0.24 | 0.67 | ||||||||
| ppa017956m | 1 | 608637 611823 |
3.2 | 5 | f | 1 | ID=PAC:17667584;Name=ppa017956m;PACid=17667584;Parent=ppa017956m.g... | 0.95 | 0.28 | ||||||||
| ppa020579m | 1 | 639233 641217 |
2 | 3 | r | 1 | PF00732,PF05199 PTHR11552 KOG1238 AT1G73050.1 (R)-mandelonitrile lyase, put... | 0 | |||||||||
| ppa026213m | 1 | 647678 652449 |
4.8 | 3 | f | 1 | PF00023 PTHR18958 AT3G18670.1 ankyrin repeat family protein... | 0 | |||||||||
| ppa014359m | 1 | 653393 654199 |
0.8 | 0 | r | 1 | ID=PAC:17669194;Name=ppa014359m;PACid=17669194;Parent=ppa014359m.g... | 1 | 0.63 | ||||||||
| ppa023554m | 1 | 655570 660477 |
4.9 | 3 | f | 1 | PF00023 PTHR18958 AT3G18670.1 ankyrin repeat family protein... | 0 | 0 | ||||||||
| ppa022906m | 1 | 668403 669011 |
0.6 | 0 | f | 1 | AT5G04730.1 unknown protein... | 0 | |||||||||
| ppa002653m | 1 | 672408 676389 |
4 | 3 | f | 1 | PF04576 AT4G13630.1 unknown protein... | 0.32 | 0.09 | ||||||||
| ppa026976m | 1 | 678019 682225 |
4.2 | 4 | r | 1 | PF01388,PF00505 PTHR13711 KOG2744 AT1G04880.1 high mobility group (HMG1/2) ... | 0.15 | 0.05 | ||||||||
| ppa014029m | 1 | 682803 683569 |
0.8 | 0 | r | 1 | ID=PAC:17653330;Name=ppa014029m;PACid=17653330;Parent=ppa014029m.g... | 0.97 | 0.7 | ||||||||
| ppa022464m | 1 | 686268 687230 |
1 | 1 | f | 1 | PF00031 AT3G12490.2 ATCYSB cysteine protease inhibitor, putative / cystatin... | 0 | |||||||||
| ppa022506m | 1 | 690018 691023 |
1 | 1 | r | 1 | PF00179 PTHR11621 KOG0417 AT5G53300.1 UBC10 UBC10 (ubiquitin-conjugating en... | 0 | |||||||||
| ppa010345m | 1 | 692998 693990 |
1 | 1 | r | 1 | PF00847 AT4G13620.1 AP2 domain-containing transcription factor, putative... | 0.13 | 0.04 | ||||||||
| ppa014532m | 1 | 700737 701567 |
0.8 | 2 | r | 1 | PF04419 PTHR13596 AT3G24100.1 unknown protein... | 1 | 0.9 | ||||||||
| ppa025589m | 1 | 702535 703262 |
0.7 | 2 | r | 1 | PF02704 AT2G30810.1 gibberellin-regulated family protein... | 0 | |||||||||
| ppa026867m | 1 | 707238 707561 |
0.3 | 1 | r | 1 | PF02704 AT2G30810.1 gibberellin-regulated family protein... | 0 | |||||||||
| ppa000917m | 1 | 711208 716759 |
5.6 | 2 | f | 1 | PF02148,PF00443 PTHR10420 KOG1873 AT2G32780.1 UBP1 UBP1 (UBIQUITIN-SPECIFIC... | 0.39 | 0.42 | ||||||||
| ppa026075m | 1 | 719153 721715 |
2.6 | 2 | f | 1 | PF07983 AT4G13600.1 unknown protein... | 0 | |||||||||
| ppa006195m | 1 | 723242 727070 |
3.8 | 5 | r | 1 | PF00149 PTHR22953 KOG1378 AT3G07130.1 PAP15 PAP15 (PURPLE ACID PHOSPHATASE ... | 0 | |||||||||
| ppa011320m | 1 | 728594 733658 |
5.1 | 5 | f | 1 | PF00810 PTHR10585 KOG3106 AT3G25040.1 ER lumen protein retaining receptor, ... | 0 | |||||||||
| ppa019277m | 1 | 736094 738508 |
2.4 | 0 | r | 1 | PF01301,PF02140 PTHR23421 KOG0496 AT2G16730.1 BGAL13 BGAL13; beta-galactosi... | 0 | |||||||||
| ppa026900m | 1 | 743446 746004 |
2.6 | 1 | f | 1 | PF01301,PF02140 PTHR23421 KOG0496 AT2G16730.1 BGAL13 BGAL13; beta-galactosi... | 0 | |||||||||
| ppa024776m | 1 | 748163 749565 |
1.4 | 2 | f | 1 | PF05699 AT3G42170.1 DNA binding... | 0 | |||||||||
| ppa021999m | 1 | 753031 754218 |
1.2 | 0 | r | 1 | PF03478,PF00646 AT1G65770.1 AMR1 F-box family protein... | 0 | |||||||||
| ppa013154m | 1 | 755525 757565 |
2 | 2 | f | 1 | PF01783 AT1G26740.1 structural constituent of ribosome... | 0.99 | 0.9 | ||||||||
| ppa022469m | 1 | 758010 758997 |
1 | 2 | r | 1 | AT3G48880.1 F-box family protein... | 0 | |||||||||
| ppa017964m | 1 | 760292 760684 |
0.4 | 1 | r | 1 | PTHR11468 AT3G46970.1 PHS2 PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2); phosphoryla... | 0 | |||||||||
| ppa014098m | 1 | 768508 770090 |
1.6 | 2 | r | 1 | PF00240,PF11976 PTHR10562 KOG1769 AT4G26840.1 SUMO1 SUMO1 (SMALL UBIQUITIN-... | 1 | 0.9 | ||||||||
| ppa017405m | 1 | 778179 778762 |
0.6 | 2 | r | 1 | ID=PAC:17642404;Name=ppa017405m;PACid=17642404;Parent=ppa017405m.g... | 0 |