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PeGDB v.0 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
ppa023343m 1 40478
51313
10.8 12 f 1 PF03810 PTHR10997 AT3G08960.1 binding / protein transporter... 0.13 0.04
ppa017353m 1 42268
42585
0.3 0 r 1 PF02519 AT5G10990.1 auxin-responsive family protein... 0
ppa017302m 1 57662
58873
1.2 1 f 1 ID=PAC:17642965;Name=ppa017302m;PACid=17642965;Parent=ppa017302m.g... 0
ppa011557m 1 71553
73413
1.9 2 f 1 PTHR13832 AT4G28400.1 protein phosphatase 2C, putative / PP2C, putative... 0.98 0.89
ppa019759m 1 79815
81598
1.8 1 r 1 PF08263,PF00560 PTHR23258 AT1G62440.1 LRX2 LRX2 (LEUCINE-RICH REPEAT/EXTENS... 0
ppa011509m 1 89930
94937
5 5 r 1 AT1G75340.1 zinc finger (CCCH-type) family protein... 0.96 0.77
ppa019610m 1 100915
103055
2.1 5 f 1 PF00076 PTHR23099 AT5G58130.1 RNA recognition motif (RRM)-containing protei... 0
ppa011541m 1 112707
117928
5.2 5 r 1 PF09229 PTHR13009 AT5G58110.1 ATPase activator/ chaperone binding... 0 0
ppa025999m 1 142245
151312
9.1 12 f 1 AT5G58100.1 unknown protein... 0 0
ppa004493m 1 154211
162006
7.8 11 f 1 AT5G58100.1 unknown protein... 0.47 0.36
ppa004964m 1 179783
183519
3.7 1 f 1 PF00332,PF07983 AT5G58090.1 glycosyl hydrolase family 17 protein... 0.11 0.03
ppa006326m 1 185226
190692
5.5 1 f 1 PF07714,PF00069 PTHR23257 KOG0192 AT4G31170.1 protein kinase family protein... 0.96 0.89
ppa006319m 1 192259
199004
6.7 1 f 1 PF07714,PF00069 PTHR23257 KOG0192 AT4G31170.1 protein kinase family protein... 1 0.9
ppa013576m 1 200448
201257
0.8 1 f 1 ID=PAC:17645692;Name=ppa013576m;PACid=17645692;Parent=ppa013576m.g... 0
ppa021173m 1 209594
210095
0.5 2 f 1 PF00403 PTHR22814 KOG1603 AT3G56891.1 metal ion binding... 0
ppa018370m 1 210547
212298
1.8 1 f 1 PF01535 PTHR10483 AT2G20540.1 pentatricopeptide (PPR) repeat-containing pro... 0
ppa017280m 1 213972
214523
0.6 0 r 1 PF00847 AT4G31060.1 AP2 domain-containing transcription factor, putative... 0
ppa026608m 1 215880
216248
0.4 1 r 1 PF00366 PTHR10744 KOG1740 K02961 AT1G49400.1 emb1129 emb1129 (embryo defect... 0
ppa019899m 1 217917
218876
1 2 f 1 PF10551 AT4G38180.1 FRS5 FRS5 (FAR1-related sequence 5); zinc ion binding... 0
ppa006489m 1 224997
232681
7.7 6 f 1 PF03040 AT4G31040.1 proton extrusion protein-related... 0.53 0.66
ppa022157m 1 234247
236385
2.1 2 r 1 PF01535 PTHR10483 AT3G16890.1 PPR40 PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN P... 0
ppa002677m 1 249809
256506
6.7 7 f 1 PF04146 PTHR12357 KOG1901 AT3G13060.2 ECT5 unknown protein... 0
ppa004988m 1 259130
261706
2.6 3 r 1 PF00067 PTHR19383 KOG0157 AT5G36110.1 CYP716A1 CYP716A1; electron carrier/ ... 0.79 0.84
ppa025507m 1 277129
282308
5.2 16 f 1 PF00432 KOG0497 AT2G07050.1 CAS1 CAS1 (cycloartenol synthase 1); cycloarten... 0
ppa001512m 1 288975
298573
9.6 12 f 1 PF03109 PTHR10566 KOG1235 K08869 AT3G24190.1 ABC1 family protein... 0.36 0.36
ppa019422m 1 299037
300453
1.4 1 f 1 ID=PAC:17640559;Name=ppa019422m;PACid=17640559;Parent=ppa019422m.g... 0
ppa002609m 1 303669
309654
6 1 r 1 PF00023,PF11904 PTHR12447 KOG0522 AT1G04780.1 ankyrin repeat family protein... 0.41 0.12
ppa006888m 1 312780
314924
2.1 1 r 1 PF00195,PF02797 2.3.1.74 K00660 AT5G13930.1 TT4 TT4 (TRANSPARENT TESTA 4); ... 0.79 0.84
ppa006899m 1 320088
321562
1.5 1 r 1 PF00195,PF02797 2.3.1.74 K00660 AT5G13930.1 TT4 TT4 (TRANSPARENT TESTA 4); ... 0.51 0.75
ppa002982m 1 333005
340422
7.4 13 f 1 PF00920 PTHR21000 KOG2448 4.2.1.9 K01687 AT3G23940.1 dehydratase family... 0.49 0.28
ppa001636m 1 345757
351916
6.2 7 f 1 PF00097 PTHR22765 AT1G04790.1 zinc finger (C3HC4-type RING finger) family p... 0.4 0.55
ppa005421m 1 353788
357524
3.7 13 r 1 PF00108,PF02803 PTHR18919 KOG1389 2.3.1.16 K00632 AT2G33150.1 PKT3 PKT3 (PE... 1 0.9
ppa006057m 1 353788
357524
3.7 12 r 1 PF00108,PF02803 PTHR18919 KOG1389 AT2G33150.1 PKT3 PKT3 (PEROXISOMAL 3-KETO... 1 0.9
ppa011188m 1 360157
362554
2.4 4 r 1 PF00957 PTHR21136 KOG0859 K08511 AT1G04760.1 ATVAMP726 ATVAMP726... 0.05 0.01
ppa000644m 1 363484
367698
4.2 6 r 1 PF03552 AT2G33100.1 ATCSLD1 ATCSLD1; cellulose synthase/ transferase, trans... 0
ppa027232m 1 368596
46853355
46484.8 13 f 320 AT2G26040.1 Bet v I allergen family protein... 0.2 0.3
ppa012404m 1 370865
372350
1.5 2 r 1 PF00646 AT5G24560.1 AtPP2-B12 AtPP2-B12 (Phloem protein 2-B12); carbohydrat... 1 0.9
ppa010122m 1 374754
376502
1.7 2 r 1 PF00646 AT5G24560.1 AtPP2-B12 AtPP2-B12 (Phloem protein 2-B12); carbohydrat... 1 0.9
ppa019418m 1 379846
380327
0.5 1 f 1 PF07802 AT1G14060.1 unknown protein... 0
ppa014947m 1 391737
394718
3 2 r 1 PF02985 PTHR10527 AT5G19820.1 emb2734 emb2734 (embryo defective 2734); bind... 0
ppa015326m 1 397471
400086
2.6 2 f 1 AT4G13690.1 unknown protein... 0.24 0.07
ppa025283m 1 401212
402465
1.3 1 r 1 PF00646 AT1G69090.1 F-box family protein... 0
ppa001907m 1 403847
406351
2.5 1 f 1 PF02151 AT5G25070.1 unknown protein... 0.37 0.11
ppa002726m 1 407254
415890
8.6 14 r 1 PTHR21650:SF4 KOG2092 AT1G60995.1 unknown protein... 0.36 0.24
ppa001012m 1 419483
429644
10.2 17 f 1 PF04685,PF12215 PTHR12654 KOG2119 AT3G24180.1 catalytic/ glucosylceramidase... 0.78 0.66
ppa004670m 1 430691
440922
10.2 15 f 1 PF07992,PF00070,PF02852 PTHR22912 KOG0405 AT3G24170.1 ATGR1 ATGR1 (glutathi... 1 0.9
ppa004673m 1 430691
440922
10.2 15 f 1 PF07992,PF00070,PF02852 PTHR22912 KOG0405 AT3G24170.1 ATGR1 ATGR1 (glutathi... 1 0.9
ppa026896m 1 442290
444865
2.6 5 r 1 PF01471,PF00684 AT4G13670.1 PTAC5 PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)... 0
ppa007280m 1 446729
451149
4.4 10 r 1 AT3G24160.1 PMP PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)... 1 0.9
ppa007289m 1 446729
451149
4.4 10 r 1 AT3G24160.1 PMP PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)... 1 0.9
ppa007334m 1 446729
451149
4.4 10 r 1 AT3G24160.1 PMP PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)... 1 0.9
ppa022746m 1 458433
464664
6.2 14 f 1 PF00400 PTHR22847 KOG0266 AT2G32700.6 LUH WD-40 repeat family protein... 0
ppa015850m 1 460392
460869
0.5 2 r 1 AT5G01300.1 phosphatidylethanolamine-binding family protein... 0
ppa015929m 1 465801
466019
0.2 0 f 1 ID=PAC:17649568;Name=ppa015929m;PACid=17649568;Parent=ppa015929m.g... 0
ppa017493m 1 469909
470289
0.4 0 f 1 ID=PAC:17643928;Name=ppa017493m;PACid=17643928;Parent=ppa017493m.g... 0
ppa001706m 1 492379
501034
8.7 16 f 1 PF08513,PF00400 PTHR22847 KOG0266 AT2G32700.6 LUH WD-40 repeat family prote... 0.65 0.53
ppa021972m 1 501840
502961
1.1 1 r 1 AT5G07900.1 mitochondrial transcription termination factor family protein /... 0
ppa015555m 1 512207
515001
2.8 2 f 1 ID=PAC:17665583;Name=ppa015555m;PACid=17665583;Parent=ppa015555m.g... 0
ppa007609m 1 519185
520413
1.2 1 r 1 PF02536 KOG1267 AT5G07900.1 mitochondrial transcription termination factor ... 0.53 0.16
ppa018267m 1 524048
525944
1.9 4 r 1 PF03732,PF00098 PTHR10178:SF12 ... 0.19 0.06
ppa008328m 1 527550
529824
2.3 3 f 1 PF00097,PF00569 PTHR15898 KOG4582 AT3G24800.1 PRT1 PRT1 (PROTEOLYSIS 1); ub... 0.28 0.48
ppa010514m 1 535243
538540
3.3 2 f 1 PF02234 PTHR10265 AT5G48820.1 ICK6 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-D... 0.53 0.76
ppa013221m 1 542219
545803
3.6 2 r 1 PF00173 PTHR19359 KOG0537 AT2G32720.1 CB5-B CB5-B (CYTOCHROME B5 ISOFORM B)... 1 0.9
ppa000699m 1 550737
557224
6.5 12 f 1 PF01851 PTHR10943 KOG2062 K03032 AT2G32730.1 26S proteasome regulatory subu... 0.63 0.49
ppa020429m 1 559213
560704
1.5 2 f 1 PF00010 PTHR12565:SF7 AT3G24140.1 FMA FMA (FAMA); DNA binding / transcripti... 0
ppa011551m 1 562746
565000
2.3 3 f 1 PF00572 PTHR11545 KOG3204 K02872 AT5G48760.1 60S ribosomal protein L13A (RP... 1 0.9
ppa012026m 1 562746
564287
1.5 2 f 1 PF00572 PTHR11545 KOG3204 AT5G48760.1 60S ribosomal protein L13A (RPL13aD)... 1 0.9
ppa020682m 1 567987
570525
2.5 4 f 1 PF01095 AT3G24130.1 pectinesterase family protein... 0
ppa012985m 1 578694
581153
2.5 4 r 1 AT1G04900.1 unknown protein... 0
ppa007491m 1 586238
590934
4.7 7 f 1 PF00249 AT4G13640.1 UNE16 UNE16 (unfertilized embryo sac 16); transcription... 0.27 0.08
ppa010393m 1 594867
596910
2 4 f 1 PF00036 PTHR10891 KOG0027 AT3G24110.1 calcium-binding EF hand family protei... 0
ppa001427m 1 597425
600122
2.7 0 r 1 PF00069,PF07714 PTHR23258 KOG1187 AT2G32800.1 AP4.3A AP4.3A; ATP binding / ... 0.24 0.67
ppa017956m 1 608637
611823
3.2 5 f 1 ID=PAC:17667584;Name=ppa017956m;PACid=17667584;Parent=ppa017956m.g... 0.95 0.28
ppa020579m 1 639233
641217
2 3 r 1 PF00732,PF05199 PTHR11552 KOG1238 AT1G73050.1 (R)-mandelonitrile lyase, put... 0
ppa026213m 1 647678
652449
4.8 3 f 1 PF00023 PTHR18958 AT3G18670.1 ankyrin repeat family protein... 0
ppa014359m 1 653393
654199
0.8 0 r 1 ID=PAC:17669194;Name=ppa014359m;PACid=17669194;Parent=ppa014359m.g... 1 0.63
ppa023554m 1 655570
660477
4.9 3 f 1 PF00023 PTHR18958 AT3G18670.1 ankyrin repeat family protein... 0 0
ppa022906m 1 668403
669011
0.6 0 f 1 AT5G04730.1 unknown protein... 0
ppa002653m 1 672408
676389
4 3 f 1 PF04576 AT4G13630.1 unknown protein... 0.32 0.09
ppa026976m 1 678019
682225
4.2 4 r 1 PF01388,PF00505 PTHR13711 KOG2744 AT1G04880.1 high mobility group (HMG1/2) ... 0.15 0.05
ppa014029m 1 682803
683569
0.8 0 r 1 ID=PAC:17653330;Name=ppa014029m;PACid=17653330;Parent=ppa014029m.g... 0.97 0.7
ppa022464m 1 686268
687230
1 1 f 1 PF00031 AT3G12490.2 ATCYSB cysteine protease inhibitor, putative / cystatin... 0
ppa022506m 1 690018
691023
1 1 r 1 PF00179 PTHR11621 KOG0417 AT5G53300.1 UBC10 UBC10 (ubiquitin-conjugating en... 0
ppa010345m 1 692998
693990
1 1 r 1 PF00847 AT4G13620.1 AP2 domain-containing transcription factor, putative... 0.13 0.04
ppa014532m 1 700737
701567
0.8 2 r 1 PF04419 PTHR13596 AT3G24100.1 unknown protein... 1 0.9
ppa025589m 1 702535
703262
0.7 2 r 1 PF02704 AT2G30810.1 gibberellin-regulated family protein... 0
ppa026867m 1 707238
707561
0.3 1 r 1 PF02704 AT2G30810.1 gibberellin-regulated family protein... 0
ppa000917m 1 711208
716759
5.6 2 f 1 PF02148,PF00443 PTHR10420 KOG1873 AT2G32780.1 UBP1 UBP1 (UBIQUITIN-SPECIFIC... 0.39 0.42
ppa026075m 1 719153
721715
2.6 2 f 1 PF07983 AT4G13600.1 unknown protein... 0
ppa006195m 1 723242
727070
3.8 5 r 1 PF00149 PTHR22953 KOG1378 AT3G07130.1 PAP15 PAP15 (PURPLE ACID PHOSPHATASE ... 0
ppa011320m 1 728594
733658
5.1 5 f 1 PF00810 PTHR10585 KOG3106 AT3G25040.1 ER lumen protein retaining receptor, ... 0
ppa019277m 1 736094
738508
2.4 0 r 1 PF01301,PF02140 PTHR23421 KOG0496 AT2G16730.1 BGAL13 BGAL13; beta-galactosi... 0
ppa026900m 1 743446
746004
2.6 1 f 1 PF01301,PF02140 PTHR23421 KOG0496 AT2G16730.1 BGAL13 BGAL13; beta-galactosi... 0
ppa024776m 1 748163
749565
1.4 2 f 1 PF05699 AT3G42170.1 DNA binding... 0
ppa021999m 1 753031
754218
1.2 0 r 1 PF03478,PF00646 AT1G65770.1 AMR1 F-box family protein... 0
ppa013154m 1 755525
757565
2 2 f 1 PF01783 AT1G26740.1 structural constituent of ribosome... 0.99 0.9
ppa022469m 1 758010
758997
1 2 r 1 AT3G48880.1 F-box family protein... 0
ppa017964m 1 760292
760684
0.4 1 r 1 PTHR11468 AT3G46970.1 PHS2 PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2); phosphoryla... 0
ppa014098m 1 768508
770090
1.6 2 r 1 PF00240,PF11976 PTHR10562 KOG1769 AT4G26840.1 SUMO1 SUMO1 (SMALL UBIQUITIN-... 1 0.9
ppa017405m 1 778179
778762
0.6 2 r 1 ID=PAC:17642404;Name=ppa017405m;PACid=17642404;Parent=ppa017405m.g... 0

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