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MgGDB v.0 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
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Annotate it!
mgv1a019588m.g 1 8061
18400
10.3 21 f 1 PF00005,PF01061,PF08370 PTHR19241 KOG0065 AT1G59870.1 PEN3 PEN3 (PENETRAT... 0
mgv1a002611m.g 1 33767
39318
5.6 19 f 1 PF00390,PF03949 PTHR23406 KOG1257 1.1.1.40 K00029 AT1G79750.1 ATNADP-ME4 AT... 1 1
mgv1a007756m.g 1 41727
45056
3.3 10 f 1 PF03985 PTHR23188 AT1G79730.1 ELF7 ELF7 (EARLY FLOWERING 7)... 0.93 0.9
mgv1a008530m.g 1 45614
49031
3.4 11 r 2 PF00581 AT3G59780.1 unknown protein... 0.65 0.67
mgv1a011501m.g 1 58109
60511
2.4 5 f 1 PF02309 AT3G16500.1 PAP1 PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); trans... 0.98 1
mgv1a005054m.g 1 60860
64878
4 8 r 1 PF00349,PF03727 PTHR19443 KOG1369 2.7.1.1 K00844 AT4G29130.1 HXK1 HXK1 (HEX... 0.96 0.99
mgv1a003599m.g 1 65834
70296
4.5 8 r 1 PF01909,PF04928,PF04926 PTHR10682 KOG2245 AT4G32850.5 nPAP nPAP (NUCLEAR ... 0.83 0.76
mgv1a017188m.g 1 70629
71287
0.7 2 r 1 AT4G32850.1 nPAP nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/... 0
mgv1a021295m.g 1 74917
76405
1.5 2 f 1 PF00612 PTHR13140:SF12 AT3G16490.1 IQD26 IQD26 (IQ-domain 26); calmoduli... 0.46 0.14
mgv1a018903m.g 1 86389
88965
2.6 3 f 1 AT1G52080.1 AR791 AR791; actin binding... 0
mgv1a019714m.g 1 90330
91271
0.9 0 f 1 PF05910 AT2G04220.1 unknown protein... 0
mgv1a018710m.g 1 92679
94552
1.9 1 f 1 PF03267,PF02485 AT5G11730.1 unknown protein... 0
mgv1a016015m.g 1 95770
97033
1.3 3 f 1 ID=PAC:17682634;Name=mgv1a016015m;pacid=17682634;longest=1;Parent=mgv1a0160... 1 0.99
mgv1a014002m.g 1 97634
98834
1.2 2 f 1 PF01419 AT1G73040.1 jacalin lectin family protein... 1 0.96
mgv1a004135m.g 1 99957
103111
3.2 3 f 1 AT3G21295.1 unknown protein... 0
mgv1a015892m.g 1 104141
105885
1.7 3 f 1 PF01778 PTHR10544 KOG3412 K02903 AT4G29410.1 60S ribosomal protein L28 (R... 0.97 0.97
mgv1a002841m.g 1 106268
111229
5 14 r 1 PF02812,PF00208 PTHR11606 KOG2250 1.4.1.4 K00262 AT1G51720.1 glutamate deh... 0.93 0.71
mgv1a004697m.g 1 116095
121726
5.6 13 f 1 PF00400,PF10586,PF10594 PTHR11871 KOG1354 AT1G17720.2 ATB BETA ATB BETA; ... 0.9 0.87
mgv1a013541m.g 1 124075
124787
0.7 0 f 1 PF02701 AT3G21270.1 ADOF2 ADOF2; DNA binding / transcription factor... 1 0.92
mgv1a002323m.g 1 137430
141650
4.2 9 f 1 PF00069,PF07714 PTHR23258 KOG1187 AT3G13690.1 protein kinase family prot... 0.9 0.93
mgv1a011560m.g 1 147208
150950
3.7 4 r 1 AT1G55170.1 unknown protein... 0.99 0.98
mgv1a002308m.g 1 162447
166873
4.4 15 f 1 PF01301,PF02140 PTHR23421 KOG0496 AT3G13750.1 BGAL1 BGAL1 (Beta galactosi... 0.42 0.34
mgv1a002772m.g 1 167391
171391
4 6 r 1 PF02990 PTHR10766 KOG1278 AT3G13772.1 endomembrane protein 70, putative... 1 0.97
mgv1a006195m.g 1 172440
177961
5.5 14 r 1 PF00400,PF12265 PTHR22850 KOG0264 AT2G19520.1 FVE FVE; metal ion binding... 1 0.97
mgv1a001459m.g 1 181700
191123
9.4 22 f 1 PF05879 PTHR10751 KOG2203 AT3G13870.1 RHD3 RHD3 (ROOT HAIR DEFECTIVE 3); ... 1 0.98
mgv1a012216m.g 1 197066
198040
1 0 f 1 PF07320,PF03168 AT1G17620.1 unknown protein... 1 0.96
mgv1a027148m.g 1 199244
201103
1.9 2 r 1 PF03195 AT3G13850.1 LBD22 LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)... 0
mgv1a017583m.g 1 202298
204179
1.9 1 f 1 AT3G13845.1 unknown protein... 0.85 0.94
mgv1a011229m.g 1 204787
206051
1.3 1 f 1 AT3G13780.1 unknown protein... 0
mgv1a008297m.g 1 207601
210974
3.4 11 f 1 PF03446,PF03807 PTHR22981 KOG0409 AT1G17650.1 GLYR2 GLYR2 (GLYOXYLATE RED... 1 0.96
mgv1a015484m.g 1 211470
214118
2.6 2 f 1 PF00468 AT3G13882.1 structural constituent of ribosome... 1 0.97
mgv1a012099m.g 1 218895
220026
1.1 2 r 1 AT1G72670.1 iqd8 iqd8 (IQ-domain 8); calmodulin binding... 0.96 0.94
mgv1a022816m.g 1 221659
222681
1 1 f 1 AT1G72690.1 unknown protein... 0.84 0.25
mgv11b018638m.g 1 224679
224894
0.2 0 f 1 AT5G10310.1 unknown protein... 0
mgv1a014628m.g 1 225707
228181
2.5 5 f 2 PF01217 PTHR11043 KOG3343 AT1G60970.1 clathrin adaptor complex small cha... 0.98 0.97
mgv1a000361m.g 1 231817
237723
5.9 9 f 1 PF00702 PTHR11939 KOG0206 3.6.3.1 K01530 AT1G17500.1 ATPase, coupled to tr... 0.35 0.42
mgv1a005939m.g 1 239045
243114
4.1 12 f 1 PF00069 PTHR11909 KOG1163 2.7.11.1 K02218 AT1G72710.1 CKL2 CKL2 (CASEIN KIN... 1 1
mgv1a024058m.g 1 244601
244966
0.4 0 r 1 PF12023 AT2G19460.1 unknown protein... 1 0.85
mgv1a007331m.g 1 247000
250326
3.3 4 r 1 PF00270,PF00271 PTHR10967 KOG0328 K03257 AT3G13920.1 EIF4A1 EIF4A1 (EUKARY... 1 0.98
mgv1a012697m.g 1 251539
254833
3.3 5 r 1 PF00249 PTHR21717:SF4 AT1G17520.1 DNA-binding protein, putative... 0.99 0.98
mgv1a003906m.g 1 256867
263187
6.3 18 f 1 PF00364,PF02817,PF00198 PTHR23151 KOG0557 2.3.1.12 K00627 AT1G54220.1 dihy... 0.95 0.96
mgv1a027042m.g 1 264068
264643
0.6 0 r 1 PF02466 PTHR15371 KOG3324 AT1G17530.1 ATTIM23-1 ATTIM23-1 (TRANSLOCASE OF... 1 0.9
mgv1a001438m.g 1 267790
272719
4.9 8 r 1 PF00582,PF00069,PF07714 PTHR23258 KOG1187 AT5G12000.1 kinase... 0
mgv1a005458m.g 1 275799
278823
3 4 f 1 PF00481 PTHR13832 KOG0698 AT1G72770.1 HAB1 HAB1 (HOMOLOGY TO ABI1); catal... 0.82 0.79
mgv1a009368m.g 1 278889
281145
2.3 3 r 1 PF06870 KOG4183 AT3G13940.1 DNA binding / DNA-directed RNA polymerase... 0.64 0.48
mgv1a022443m.g 1 282910
283179
0.3 0 r 1 PF00234 AT5G48485.1 DIR1 DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1); lipi... 0
mgv1a011858m.g 1 284565
288593
4 4 r 1 PF07649,PF00628,PF12165 PTHR23123 KOG1632 AT5G20510.1 AL5 AL5 (ALFIN-LIKE... 1 0.99
mgv1a020926m.g 1 291113
295288
4.2 8 r 1 PF06741,PF07145 PTHR12854 KOG2375 AT1G54170.1 CID3 CID3 (CTC-Interacting ... 0
mgv1a002508m.g 1 303207
306753
3.5 5 r 1 PF02450 PTHR11440 AT5G13640.1 PDAT ATPDAT; phosphatidylcholine-sterol O-... 0.81 0.77
mgv1a026119m.g 1 310346
311464
1.1 0 f 1 AT1G54200.1 unknown protein... 0
mgv1a005063m.g 1 313486
319803
6.3 7 r 1 PF00249 PTHR21717:SF5 AT1G72650.1 TRFL6 TRFL6 (TRF-LIKE 6); DNA binding ... 0.98 0.91
mgv1a012389m.g 1 321554
328301
6.7 13 f 2 PTHR14194 AT1G72640.2 binding / catalytic... 1 0.93
mgv1a016615m.g 1 324090
325855
1.8 1 r 1 PF07011 AT1G17455.1 ELF4-L4 ELF4-L4 (ELF4-Like 4)... 1 1
mgv11b017157m.g 1 325906
327741
1.8 3 f 1 PF04110 PTHR13385 KOG3439 K08336 AT1G54210.1 ATG12A ATG12A (AUTOPHAGY 12 A... 1 0.7
mgv1a023220m.g 1 327792
328570
0.8 1 r 1 PTHR10641 AT2G16720.1 MYB7 MYB7 (MYB DOMAIN PROTEIN 7); DNA binding / tr... 0 0
mgv1a022096m.g 1 344760
345392
0.6 0 f 1 PF00190,PF07883 AT1G72610.1 GER1 GER1 (GERMIN-LIKE PROTEIN 1); oxalate ... 1 0.9
mgv1a002120m.g 1 352828
356949
4.1 5 r 1 PF01966,PF04607 PTHR21262 KOG1157 AT3G14050.1 RSH2 RSH2 (RELA-SPOT HOMOLO... 0.63 0.74
mgv1a022770m.g 1 359607
359873
0.3 0 r 1 AT1G54120.1 unknown protein... 0
mgv1a023513m.g 1 368258
371954
3.7 10 f 1 PF00171 PTHR11699 KOG2453 AT1G54100.1 ALDH7B4 ALDH7B4 (Aldehyde Dehydroge... 1 0.84
mgv1a027030m.g 1 378040
381080
3 6 r 1 PF03893,PF01764 PTHR21493 KOG2088 AT3G14075.1 lipase class 3 family prot... 0.41 0.12
mgv1a017823m.g 1 388519
389455
0.9 2 f 1 AT1G72490.1 unknown protein... 0
mgv1a016267m.g 1 390337
392989
2.7 4 f 1 PF01423 PTHR15588 KOG1782 AT3G14080.1 small nuclear ribonucleoprotein, p... 0.94 0.98
mgv1a004785m.g 1 394242
397547
3.3 4 f 1 PF06814 PTHR21229 KOG2568 AT1G72480.1 unknown protein... 0.87 0.76
mgv1a003731m.g 1 399435
401396
2 0 r 1 PF03081 PTHR12542 KOG2344 AT1G72470.1 ATEXO70D1 ATEXO70D1 (exocyst subuni... 0
mgv1a025291m.g 1 402201
404360
2.2 1 r 1 PF08263,PF00560,PF00069 PTHR23258 KOG1187 AT3G42880.1 leucine-rich repea... 0
mgv1a013086m.g 1 407177
409396
2.2 4 f 3 PF06200,PF09425 PTHR23418:SF2 AT1G72450.1 JAZ6 JAZ6 (JASMONATE-ZIM-DOMAI... 1.01 0.97
mgv1a007027m.g 1 410417
414960
4.5 11 f 1 PF00076 PTHR10432 KOG0148 AT1G17370.1 UBP1B UBP1B (oligouridylate binding... 1 0.95
mgv1a000423m.g 1 415629
427908
12.3 24 f 1 PF04121 PTHR13003 KOG1964 AT3G14120.2 unknown protein... 0.4 0.37
mgv1a013509m.g 1 428009
431779
3.8 5 r 1 PF00957 PTHR21136 KOG0862 K08517 AT1G11890.1 SEC22 SEC22; transporter... 1 1
mgv1a025981m.g 1 434200
437059
2.9 3 r 1 PF06075 AT1G08760.1 unknown protein... 0
mgv1a000216m.g 1 437877
445445
7.6 9 r 1 AT3G14172.1 unknown protein... 0.29 0.27
mgv1a016014m.g 1 454629
455771
1.1 3 r 1 ID=PAC:17688512;Name=mgv1a016014m;pacid=17688512;longest=1;Parent=mgv1a0160... 0.4 0.12
mgv1a018554m.g 1 456255
458845
2.6 3 r 1 AT3G14172.1 unknown protein... 0
mgv1a015504m.g 1 460031
460643
0.6 0 r 1 ID=PAC:17687915;Name=mgv1a015504m;pacid=17687915;longest=1;Parent=mgv1a0155... 1 0.95
mgv1a016024m.g 1 462029
463288
1.3 2 r 2 PF05564 AT1G54070.1 dormancy/auxin associated protein-related... 1 0.97
mgv1a009975m.g 1 466811
468931
2.1 2 r 1 PF00847 AT1G53910.3 RAP2.12 RAP2.12; DNA binding / transcription factor... 1 0.96
mgv1a015271m.g 1 472807
473739
0.9 1 r 1 PF04570 AT1G53885.1 senescence-associated protein-related... 1 0.99
mgv1a007694m.g 1 478632
481802
3.2 4 r 1 PF01008 PTHR10233 KOG1466 K03239 AT1G53880.1 GTP binding / translation in... 0.95 0.96
mgv1a020479m.g 1 484292
485129
0.8 2 r 1 PF04525 AT3G14260.1 unknown protein... 0
mgv1a000120m.g 1 488877
497460
8.6 10 f 1 PF01363,PF01504 PTHR23086 KOG0230 AT3G14270.1 phosphatidylinositol-4-pho... 0.24 0.12
mgv1a012886m.g 1 498436
501393
3 8 f 1 PF10584,PF00227 PTHR11599 KOG0176 3.4.25.1 K02729 AT1G53850.1 PAE1 PAE1; en... 1 0.99
mgv1a005454m.g 1 501662
504900
3.2 13 r 1 PF00155 PTHR11751 KOG0258 AT1G72330.1 ALAAT2 ALAAT2 (ALANINE AMINOTRANSFE... 1 0.97
mgv1a003666m.g 1 508434
511486
3.1 1 r 1 PF04043,PF01095 AT1G53840.1 ATPME1 ATPME1; pectinesterase... 1 0.96
mgv1a017440m.g 1 518270
518535
0.3 0 f 1 ID=PAC:17669585;Name=mgv1a017440m;pacid=17669585;longest=1;Parent=mgv1a0174... 0
mgv1a023632m.g 1 520722
521631
0.9 1 r 1 PF00097 PTHR22764 AT1G72310.1 ATL3 ATL3; protein binding / zinc ion bind... 1 0.3
mgv1a003936m.g 1 523527
526434
2.9 6 f 1 PF07460 AT1G53800.1 endonuclease... 0.73 0.82
mgv1a005351m.g 1 527894
531935
4 10 f 1 PF00004 PTHR23073 KOG0729 K03061 AT1G53750.1 RPT1A RPT1A (REGULATORY PARTI... 0.93 0.87
mgv1a026670m.g 1 532903
535042
2.1 4 f 1 PF01764 KOG4569 AT3G14360.1 lipase class 3 family protein... 0
mgv1a018357m.g 1 539918
540121
0.2 0 f 1 PF08137 AT1G53708.1 RTFL9 RTFL9 (ROTUNDIFOLIA LIKE 9)... 0
mgv1a004474m.g 1 541549
544582
3 12 r 1 PF00149 PTHR13315 KOG3662 AT1G53710.1 hydrolase/ protein serine/threonin... 0.47 0.45
mgv1a000641m.g 1 545672
548779
3.1 0 r 1 PF08263,PF00560,PF00069,PF07714 PTHR23258 KOG1187 AT1G72300.1 leucine-ri... 0.2 0.66
mgv1a009265m.g 1 550180
551396
1.2 0 r 1 PF00069,PF07714 PTHR22986 KOG0581 AT3G21220.1 MKK5 ATMKK5 (ARABIDOPSIS TH... 0.64 0.84
mgv1a003962m.g 1 552849
554876
2 2 f 1 PF00732,PF05199 PTHR11552 KOG1238 4.1.2.10 K08248 AT1G73050.1 (R)-mandelon... 0
mgv1a015080m.g 1 556084
557182
1.1 1 r 1 AT1G17744.1 unknown protein... 0
mgv1a021491m.g 1 558838
559694
0.9 4 r 1 PF01423 PTHR11193 KOG1774 K11097 AT2G18740.1 small nuclear ribonucleoprot... 0
mgv1a009541m.g 1 560746
563668
2.9 8 f 1 PF00076 PTHR12742 KOG1457 AT3G21215.1 RNA-binding protein, putative... 1 0.99
mgv1a002145m.g 1 564540
570003
5.5 10 r 1 PF10150 AT2G04270.4 RNEE/G RNEE/G (RNASE E/G-LIKE); endoribonuclease... 0.6 0.64
mgv1a023751m.g 1 571097
575252
4.2 5 f 1 PF01094,PF00497,PF00060 PTHR18966 KOG1052 AT2G29120.1 ATGLR2.7 ATGLR2.7; ... 0
mgv1a009881m.g 1 575790
578166
2.4 4 f 1 AT3G21200.1 unknown protein... 1 0.97
mgv1a001933m.g 1 581497
587629
6.1 16 f 1 PF04675,PF01068,PF04679 PTHR10459 KOG0967 6.5.1.1 K10747 AT1G08130.1 ATLIG1... 0

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