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MeGDB v.0 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
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cassava4.1_031365m.g 10 27263
28137
0.9 1 f 1 ID=PAC:17986831;Name=cassava4.1_031365m;pacid=17986831;longest=1;Parent=cas... 0
cassava4.1_022629m.g 10 33420
33773
0.4 0 f 1 ID=PAC:17986834;Name=cassava4.1_022629m;pacid=17986834;longest=1;Parent=cas... 0
cassava4.1_027655m.g 10 46649
48004
1.4 4 f 1 ID=PAC:17986835;Name=cassava4.1_027655m;pacid=17986835;longest=1;Parent=cas... 0
cassava4.1_025236m.g 10 53898
54819
0.9 2 f 1 ID=PAC:17986833;Name=cassava4.1_025236m;pacid=17986833;longest=1;Parent=cas... 0
cassava4.1_029344m.g 10 65443
71471
6 8 f 1 ID=PAC:17986839;Name=cassava4.1_029344m;pacid=17986839;longest=1;Parent=cas... 0
cassava4.1_016957m.g 10 144624
150646
6 5 r 1 ID=PAC:17986832;Name=cassava4.1_016957m;pacid=17986832;longest=1;Parent=cas... 0.51 0.53
cassava4.1_030368m.g 10 168182
170218
2 1 r 1 ID=PAC:17986836;Name=cassava4.1_030368m;pacid=17986836;longest=1;Parent=cas... 0
cassava4.1_022495m.g 10 204760
211330
6.6 8 f 1 ID=PAC:17986842;Name=cassava4.1_022495m;pacid=17986842;longest=1;Parent=cas... 0.5 0.53
cassava4.1_018948m.g 10 219280
223133
3.9 3 f 1 ID=PAC:17986841;Name=cassava4.1_018948m;pacid=17986841;longest=1;Parent=cas... 1 0.98
cassava4.1_015436m.g 10 233998
234939
0.9 1 f 1 ID=PAC:17986843;Name=cassava4.1_015436m;pacid=17986843;longest=1;Parent=cas... 0.88 0.28
cassava4.1_031138m.g 10 252321
252554
0.2 0 f 1 ID=PAC:17986837;Name=cassava4.1_031138m;pacid=17986837;longest=1;Parent=cas... 0
cassava4.1_017405m.g 10 263678
264811
1.1 2 f 1 ID=PAC:17986840;Name=cassava4.1_017405m;pacid=17986840;longest=1;Parent=cas... 0.7 0.52
cassava4.1_020860m.g 10 265794
266294
0.5 0 f 1 ID=PAC:17986838;Name=cassava4.1_020860m;pacid=17986838;longest=1;Parent=cas... 0
cassava4.1_027406m.g 100 131167
134707
3.5 1 f 1 ID=PAC:17965174;Name=cassava4.1_027406m;pacid=17965174;longest=1;Parent=cas... 0
cassava4.1_025990m.g 10008 79034
79451
0.4 1 f 1 ID=PAC:17991241;Name=cassava4.1_025990m;pacid=17991241;longest=1;Parent=cas... 0
cassava4.1_016038m.g 10008 224957
229408
4.5 2 r 1 ID=PAC:17991242;Name=cassava4.1_016038m;pacid=17991242;longest=1;Parent=cas... 1 0.99
cassava4.1_027617m.g 10008 232185
233275
1.1 2 f 1 ID=PAC:17991243;Name=cassava4.1_027617m;pacid=17991243;longest=1;Parent=cas... 0 0
cassava4.1_018962m.g 10008 237148
237882
0.7 0 r 1 ID=PAC:17991240;Name=cassava4.1_018962m;pacid=17991240;longest=1;Parent=cas... 0.99 0.95
cassava4.1_032989m.g 10015 7023
7244
0.2 0 r 1 ID=PAC:17963580;Name=cassava4.1_032989m;pacid=17963580;longest=1;Parent=cas... 0
cassava4.1_031458m.g 10015 34015
36609
2.6 3 f 1 ID=PAC:17963591;Name=cassava4.1_031458m;pacid=17963591;longest=1;Parent=cas... 0
cassava4.1_027829m.g 10015 43460
46733
3.3 6 f 1 ID=PAC:17963587;Name=cassava4.1_027829m;pacid=17963587;longest=1;Parent=cas... 0
cassava4.1_002828m.g 10015 47561
52546
5 6 r 1 ID=PAC:17963575;Name=cassava4.1_002828m;pacid=17963575;longest=1;Parent=cas... 0
cassava4.1_019369m.g 10015 168653
171806
3.2 2 f 1 ID=PAC:17963588;Name=cassava4.1_019369m;pacid=17963588;longest=1;Parent=cas... 0.67 0.9
cassava4.1_010022m.g 10015 174057
179509
5.5 4 f 1 ID=PAC:17963574;Name=cassava4.1_010022m;pacid=17963574;longest=1;Parent=cas... 0.92 0.96
cassava4.1_023396m.g 10015 189006
202218
13.2 14 f 1 ID=PAC:17963576;Name=cassava4.1_023396m;pacid=17963576;longest=1;Parent=cas... 0.16 0.13
cassava4.1_031954m.g 10015 218698
224663
6 5 f 1 ID=PAC:17963592;Name=cassava4.1_031954m;pacid=17963592;longest=1;Parent=cas... 0
cassava4.1_020327m.g 10015 290784
296772
6 2 r 1 ID=PAC:17963593;Name=cassava4.1_020327m;pacid=17963593;longest=1;Parent=cas... 1 0.96
cassava4.1_007372m.g 10015 333310
341278
8 5 f 2 ID=PAC:17963578;Name=cassava4.1_007372m;pacid=17963578;longest=1;Parent=cas... 0.3 0.19
cassava4.1_013019m.g 10015 342673
346824
4.2 4 r 1 ID=PAC:17963584;Name=cassava4.1_013019m;pacid=17963584;longest=1;Parent=cas... 0
cassava4.1_002733m.g 10015 360123
368099
8 17 f 1 ID=PAC:17963577;Name=cassava4.1_002733m;pacid=17963577;longest=1;Parent=cas... 0.23 0.27
cassava4.1_015297m.g 10015 368724
372504
3.8 3 r 2 ID=PAC:17963585;Name=cassava4.1_015297m;pacid=17963585;longest=1;Parent=cas... 0.95 0.89
cassava4.1_019085m.g 10015 373625
375866
2.2 3 r 3 ID=PAC:17963581;Name=cassava4.1_019085m;pacid=17963581;longest=1;Parent=cas... 1 0.85
cassava4.1_006616m.g 10015 400646
404284
3.6 3 f 1 ID=PAC:17963589;Name=cassava4.1_006616m;pacid=17963589;longest=1;Parent=cas... 0.65 0.45
cassava4.1_003361m.g 10015 428053
447981
19.9 14 f 1 ID=PAC:17963573;Name=cassava4.1_003361m;pacid=17963573;longest=1;Parent=cas... 0
cassava4.1_004121m.g 10015 453341
465252
11.9 12 f 1 ID=PAC:17963590;Name=cassava4.1_004121m;pacid=17963590;longest=1;Parent=cas... 0.79 0.74
cassava4.1_033777m.g 10016 104
649
0.5 0 f 1 ID=PAC:17993803;Name=cassava4.1_033777m;pacid=17993803;longest=1;Parent=cas... 0
cassava4.1_022603m.g 10016 9697
10820
1.1 2 r 1 ID=PAC:17993800;Name=cassava4.1_022603m;pacid=17993800;longest=1;Parent=cas... 0
cassava4.1_027669m.g 10016 42956
43264
0.3 0 f 1 ID=PAC:17993802;Name=cassava4.1_027669m;pacid=17993802;longest=1;Parent=cas... 1 0.76
cassava4.1_021844m.g 10016 44700
45245
0.5 0 f 1 ID=PAC:17993801;Name=cassava4.1_021844m;pacid=17993801;longest=1;Parent=cas... 0
cassava4.1_027364m.g 10016 56307
56543
0.2 0 f 1 ID=PAC:17993805;Name=cassava4.1_027364m;pacid=17993805;longest=1;Parent=cas... 0.68 0.56
cassava4.1_015731m.g 10016 60421
61372
1 1 f 1 ID=PAC:17993804;Name=cassava4.1_015731m;pacid=17993804;longest=1;Parent=cas... 1 0.96
cassava4.1_014350m.g 10018 29380
35540
6.2 6 f 1 ID=PAC:17970920;Name=cassava4.1_014350m;pacid=17970920;longest=1;Parent=cas... 0.83 0.91
cassava4.1_014362m.g 10018 37184
41957
4.8 8 f 2 ID=PAC:17970924;Name=cassava4.1_014362m;pacid=17970924;longest=1;Parent=cas... 0.82 0.68
cassava4.1_015107m.g 10018 43698
47273
3.6 2 f 2 ID=PAC:17970926;Name=cassava4.1_015107m;pacid=17970926;longest=1;Parent=cas... 0.92 0.8
cassava4.1_027453m.g 10018 50375
50763
0.4 1 r 1 ID=PAC:17970919;Name=cassava4.1_027453m;pacid=17970919;longest=1;Parent=cas... 0
cassava4.1_034092m.g 10018 66564
71668
5.1 10 r 1 ID=PAC:17970921;Name=cassava4.1_034092m;pacid=17970921;longest=1;Parent=cas... 0.12 0.1
cassava4.1_012809m.g 10018 127701
132659
5 7 r 1 ID=PAC:17970915;Name=cassava4.1_012809m;pacid=17970915;longest=1;Parent=cas... 0
cassava4.1_022108m.g 10018 136048
142548
6.5 11 r 1 ID=PAC:17970922;Name=cassava4.1_022108m;pacid=17970922;longest=1;Parent=cas... 0.02 0.01
cassava4.1_030543m.g 10018 164620
166091
1.5 5 r 1 ID=PAC:17970918;Name=cassava4.1_030543m;pacid=17970918;longest=1;Parent=cas... 0
cassava4.1_016603m.g 10018 187028
187731
0.7 0 f 1 ID=PAC:17970923;Name=cassava4.1_016603m;pacid=17970923;longest=1;Parent=cas... 0
cassava4.1_021812m.g 10018 193776
195901
2.1 4 r 1 ID=PAC:17970917;Name=cassava4.1_021812m;pacid=17970917;longest=1;Parent=cas... 0
cassava4.1_023495m.g 10018 202656
204105
1.4 4 f 1 ID=PAC:17970916;Name=cassava4.1_023495m;pacid=17970916;longest=1;Parent=cas... 0
cassava4.1_033707m.g 10021 5503
6054
0.6 0 r 1 ID=PAC:17970844;Name=cassava4.1_033707m;pacid=17970844;longest=1;Parent=cas... 0.53 0.76
cassava4.1_017795m.g 10021 8780
12335
3.6 4 r 4 ID=PAC:17970845;Name=cassava4.1_017795m;pacid=17970845;longest=1;Parent=cas... 0.93 0.96
cassava4.1_003077m.g 10021 64025
69319
5.3 2 r 1 ID=PAC:17970842;Name=cassava4.1_003077m;pacid=17970842;longest=1;Parent=cas... 0.42 0.53
cassava4.1_025800m.g 10021 205403
207860
2.5 4 r 1 ID=PAC:17970843;Name=cassava4.1_025800m;pacid=17970843;longest=1;Parent=cas... 0
cassava4.1_024754m.g 10028 7912
8706
0.8 0 r 1 ID=PAC:17993341;Name=cassava4.1_024754m;pacid=17993341;longest=1;Parent=cas... 0.9 0.87
cassava4.1_019975m.g 10030 1246
1809
0.6 1 f 1 ID=PAC:17984307;Name=cassava4.1_019975m;pacid=17984307;longest=1;Parent=cas... 0
cassava4.1_023180m.g 10031 40542
41075
0.5 0 f 1 ID=PAC:17992864;Name=cassava4.1_023180m;pacid=17992864;longest=1;Parent=cas... 0
cassava4.1_018389m.g 10034 19302
20116
0.8 1 f 1 ID=PAC:17991459;Name=cassava4.1_018389m;pacid=17991459;longest=1;Parent=cas... 1 0.97
cassava4.1_027075m.g 10034 63589
65619
2 5 r 1 ID=PAC:17991458;Name=cassava4.1_027075m;pacid=17991458;longest=1;Parent=cas... 0
cassava4.1_010722m.g 10039 13644
19695
6.1 1 f 1 ID=PAC:17971062;Name=cassava4.1_010722m;pacid=17971062;longest=1;Parent=cas... 0.54 0.81
cassava4.1_031786m.g 10039 32392
32667
0.3 0 r 1 ID=PAC:17971060;Name=cassava4.1_031786m;pacid=17971060;longest=1;Parent=cas... 0
cassava4.1_022610m.g 10039 39213
40459
1.2 1 r 1 ID=PAC:17971061;Name=cassava4.1_022610m;pacid=17971061;longest=1;Parent=cas... 0
cassava4.1_022045m.g 10039 86398
88104
1.7 0 f 1 ID=PAC:17971059;Name=cassava4.1_022045m;pacid=17971059;longest=1;Parent=cas... 0
cassava4.1_023095m.g 10039 96046
96564
0.5 0 f 1 ID=PAC:17971063;Name=cassava4.1_023095m;pacid=17971063;longest=1;Parent=cas... 0.01 0.6
cassava4.1_021708m.g 10042 226
1282
1.1 1 f 1 ID=PAC:17980620;Name=cassava4.1_021708m;pacid=17980620;longest=1;Parent=cas... 0
cassava4.1_011621m.g 10044 20898
25614
4.7 7 f 1 ID=PAC:17970073;Name=cassava4.1_011621m;pacid=17970073;longest=1;Parent=cas... 0
cassava4.1_034247m.g 10044 26871
29464
2.6 3 r 1 ID=PAC:17970074;Name=cassava4.1_034247m;pacid=17970074;longest=1;Parent=cas... 0
cassava4.1_015079m.g 10045 3081
6737
3.7 4 f 2 ID=PAC:17980305;Name=cassava4.1_015079m;pacid=17980305;longest=1;Parent=cas... 0.58 0.79
cassava4.1_010591m.g 10045 9876
14585
4.7 10 r 1 ID=PAC:17980296;Name=cassava4.1_010591m;pacid=17980296;longest=1;Parent=cas... 0.07 0.07
cassava4.1_009374m.g 10045 21705
23588
1.9 3 r 1 ID=PAC:17980271;Name=cassava4.1_009374m;pacid=17980271;longest=1;Parent=cas... 0.98 0.96
cassava4.1_028367m.g 10045 34986
39185
4.2 11 r 1 ID=PAC:17980272;Name=cassava4.1_028367m;pacid=17980272;longest=1;Parent=cas... 0
cassava4.1_024866m.g 10045 44603
47619
3 2 r 1 ID=PAC:17980315;Name=cassava4.1_024866m;pacid=17980315;longest=1;Parent=cas... 0
cassava4.1_028092m.g 10045 60729
61329
0.6 2 f 1 ID=PAC:17980313;Name=cassava4.1_028092m;pacid=17980313;longest=1;Parent=cas... 0
cassava4.1_002934m.g 10045 62258
64786
2.5 2 r 1 ID=PAC:17980318;Name=cassava4.1_002934m;pacid=17980318;longest=1;Parent=cas... 0.36 0.76
cassava4.1_017831m.g 10045 67705
72896
5.2 5 r 1 ID=PAC:17980307;Name=cassava4.1_017831m;pacid=17980307;longest=1;Parent=cas... 0.81 0.93
cassava4.1_014480m.g 10045 84942
85912
1 0 r 1 ID=PAC:17980316;Name=cassava4.1_014480m;pacid=17980316;longest=1;Parent=cas... 1 0.95
cassava4.1_028700m.g 10045 96592
97147
0.6 2 f 1 ID=PAC:17980281;Name=cassava4.1_028700m;pacid=17980281;longest=1;Parent=cas... 0
cassava4.1_033611m.g 10045 102084
103822
1.7 5 r 1 ID=PAC:17980277;Name=cassava4.1_033611m;pacid=17980277;longest=1;Parent=cas... 0
cassava4.1_021403m.g 10045 105498
106374
0.9 2 r 1 ID=PAC:17980286;Name=cassava4.1_021403m;pacid=17980286;longest=1;Parent=cas... 0
cassava4.1_033364m.g 10045 112177
112407
0.2 0 r 1 ID=PAC:17980298;Name=cassava4.1_033364m;pacid=17980298;longest=1;Parent=cas... 0
cassava4.1_012337m.g 10045 115356
116610
1.3 0 f 1 ID=PAC:17980319;Name=cassava4.1_012337m;pacid=17980319;longest=1;Parent=cas... 0.49 0.83
cassava4.1_012086m.g 10045 131832
133403
1.6 1 f 1 ID=PAC:17980295;Name=cassava4.1_012086m;pacid=17980295;longest=1;Parent=cas... 0.41 0.17
cassava4.1_003125m.g 10045 140311
145180
4.9 3 r 1 ID=PAC:17980309;Name=cassava4.1_003125m;pacid=17980309;longest=1;Parent=cas... 0.39 0.22
cassava4.1_007655m.g 10045 159009
161771
2.8 7 f 3 ID=PAC:17980288;Name=cassava4.1_007655m;pacid=17980288;longest=1;Parent=cas... 0.24 0.16
cassava4.1_025253m.g 10045 163885
164313
0.4 0 r 1 ID=PAC:17980314;Name=cassava4.1_025253m;pacid=17980314;longest=1;Parent=cas... 1 0.9
cassava4.1_030537m.g 10045 167853
168855
1 1 r 1 ID=PAC:17980278;Name=cassava4.1_030537m;pacid=17980278;longest=1;Parent=cas... 0
cassava4.1_027984m.g 10045 178485
180218
1.7 2 f 1 ID=PAC:17980308;Name=cassava4.1_027984m;pacid=17980308;longest=1;Parent=cas... 0
cassava4.1_002927m.g 10045 180666
183968
3.3 3 f 1 ID=PAC:17980299;Name=cassava4.1_002927m;pacid=17980299;longest=1;Parent=cas... 0.23 0.32
cassava4.1_011352m.g 10045 184043
185707
1.7 3 r 1 ID=PAC:17980297;Name=cassava4.1_011352m;pacid=17980297;longest=1;Parent=cas... 0
cassava4.1_003650m.g 10045 192846
195907
3.1 3 r 2 ID=PAC:17980293;Name=cassava4.1_003650m;pacid=17980293;longest=1;Parent=cas... 0.36 0.68
cassava4.1_025211m.g 10045 206217
207527
1.3 0 r 1 ID=PAC:17980273;Name=cassava4.1_025211m;pacid=17980273;longest=1;Parent=cas... 0.34 0.7
cassava4.1_033094m.g 10045 229711
232968
3.3 3 f 1 ID=PAC:17980279;Name=cassava4.1_033094m;pacid=17980279;longest=1;Parent=cas... 0
cassava4.1_009099m.g 10045 233691
240133
6.4 2 r 2 ID=PAC:17980301;Name=cassava4.1_009099m;pacid=17980301;longest=1;Parent=cas... 0.73 0.76
cassava4.1_008773m.g 10045 253372
258918
5.5 13 r 1 ID=PAC:17980283;Name=cassava4.1_008773m;pacid=17980283;longest=1;Parent=cas... 0
cassava4.1_005491m.g 10045 260709
266361
5.7 5 r 1 ID=PAC:17980274;Name=cassava4.1_005491m;pacid=17980274;longest=1;Parent=cas... 0.54 0.5
cassava4.1_024332m.g 10045 304929
309640
4.7 6 f 1 ID=PAC:17980282;Name=cassava4.1_024332m;pacid=17980282;longest=1;Parent=cas... 0
cassava4.1_013507m.g 10045 314620
319258
4.6 8 f 1 ID=PAC:17980276;Name=cassava4.1_013507m;pacid=17980276;longest=1;Parent=cas... 0
cassava4.1_008995m.g 10045 322998
324474
1.5 0 r 1 ID=PAC:17980317;Name=cassava4.1_008995m;pacid=17980317;longest=1;Parent=cas... 0.45 0.78

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