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LjGDB v.0 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
chr1.CM0088 1 2576
515126
512.6 25 r 106 10.nd (20050613a)... 0.26 0.58
chr1.CM0591 1 518311
837138
318.8 12 r 62 10.nd partial (20050613a)... 0.4 0.65
chr1.CM0289 1 843854
1053166
209.3 14 f 44 10.nd retro (20050613a)... 0.07 0.44
chr1.CM0145 1 1059039
1279561
220.5 14 r 37 10.nc retro pseudo partial (20050613a)... 0.22 0.52
chr1.CM0016 1 1289453
1526876
237.4 10 r 34 10.nd retro partial (20050613a)... 0.16 0.56
chr1.LjT10H09 1 1534140
1610590
76.5 7 r 12 10.nc (20020926a)... 0.08 0.9
chr1.CM0078 1 1625861
1873997
248.1 9 r 34 10.nc partial (20020107a)... 0.11 0.47
chr1.CM0171 1 1883647
2605351
721.7 17 f 97 10.nc retro pseudo (20060502a)... 0.16 0.62
chr1.CM1785 1 2613481
2861351
247.9 14 r 21 10.nc retro pseudo (20060419b)... 0.17 0.54
chr1.CM0166 1 2880362
3256574
376.2 10 f 55 10.nc retro pseudo partial (20050614a)... 0.08 0.46
chr1.CM1956 1 3262101
3902623
640.5 14 f 77 10.nd partial (20060615a)... 0.17 0.64
chr1.LjB20D08 1 3913085
3998473
85.4 9 f 12 10.nc retro pseudo (20060322a)... 0.08 0.9
chr1.CM0174 1 4001804
4150340
148.5 11 r 21 10.nd (20050613a)... 0.14 0.48
chr1.LjT03K08 1 4159337
4270733
111.4 7 f 19 10.nc (20020117a)... 0.08 0.7
chr1.LjT16B05 1 4277092
4362458
85.4 2 f 16 10.nd retro (20050613a)... 0.06 0.59
chr1.LjT29N14 1 4371458
4515710
144.3 13 r 32 10.nd est GENLF032E08.r.abd,BP047593,SPD045E07.r.abd (20050617a)... 0.23 0.82
chr1.LjT48M07 1 4547603
4614686
67.1 8 f 14 10.nc retro partial (20060328b)... 0.47 0.71
chr1.CM0192 1 4626144
4899289
273.1 7 r 49 10.nd retro (20050613a)... 0.23 0.71
chr1.LjT39K18 1 4926370
5036574
110.2 15 f 15 10.nc (20030110a)... 0.21 0.69
chr1.CM0668 1 5046567
5268466
221.9 13 f 33 10.nd retro partial (20050613a)... 0.13 0.52
chr1.LjT32B13 1 5274204
5366246
92 3 f 15 10.nd (20050613a)... 0.1 0.65
chr1.LjT10G23 1 5375081
5458879
83.8 7 f 13 10.nc (20060405a)... 0.41 0.53
chr1.LjT06C08 1 5474071
5543085
69 7 f 10 10.nc (20060405a)... 0.35 0.69
chr1.LjT14B18 1 5551131
5677904
126.8 11 f 23 10.nc partial (20060406a)... 0.19 0.46
chr1.LjB17A22 1 5681449
5795610
114.2 2 f 15 10.nc pseudo (20060314a)... 0.08 0.69
chr1.LjT08C17 1 5800826
5849976
49.2 6 r 5 10.nc retro pseudo (20060406a)... 0.26 0.35
chr1.LjB21G05 1 5857061
5945800
88.7 11 f 13 10.nc partial (20060315a)... 0.25 0.6
chr1.LjT26E16 1 5968620
6065810
97.2 10 f 15 10.nc retro pseudo partial (20011017a)... 0.08 0.47
chr1.CM0023 1 6080575
6253936
173.4 14 f 38 10.nc pseudo partial (20050613a)... 0.15 0.84
chr1.CM0123 1 6269858
6518130
248.3 4 f 47 10.nd pseudo partial (20050613a)... 0.17 0.65
chr1.LjT31L11 1 6536310
6644337
108 11 f 24 10.nd retro partial (20050613a)... 0.19 0.53
chr1.CM0027 1 6659583
6798544
139 11 f 19 10.nc retro partial (20060412a)... 0.21 0.81
chr1.CM0181 1 6814138
6966035
151.9 10 r 23 10.nc (20050613a)... 0.16 0.51
chr1.LjT46M16 1 7204851
7317556
112.7 12 f 26 10.nd retro partial (20050613a)... 0.02 0.29
chr1.CM0496 1 7637701
7814154
176.5 12 r 40 10.nd pseudo partial (20050613a)... 0.14 0.53
chr1.LjT43O05 1 7893459
8010617
117.2 15 r 31 10.nd partial (20050613a)... 0.27 0.65
chr1.CM0039 1 8329337
8563775
234.4 7 r 46 10.nd retro (20050613a)... 0.26 0.63
chr1.LjT41E18 1 8630380
8743982
113.6 6 r 19 10.nc retro pseudo (20021121a)... 0.22 0.58
chr1.CM0320 1 8811056
9137184
326.1 8 f 50 10.nc (20050613a)... 0.35 0.58
chr1.CM0476 1 9203465
9449056
245.6 13 f 36 10.nd (20050613a)... 0.15 0.52
chr1.CM0794 1 9522222
9727079
204.9 6 r 43 10.nd retro (20050617a)... 0.18 0.66
chr1.CM0248 1 9809566
10180343
370.8 12 f 61 10.nc retro pseudo partial (20050613a)... 0.3 0.75
chr1.CM0125 1 10256264
10363271
107 5 f 22 10.nd est BP045165,SPD015B03.r.abd,MSQ058E08.r.abd,AV773897 (20050613a)... 0.13 0.62
chr1.CM0032 1 10435851
10748636
312.8 16 r 50 10.nd retro partial (20050613a)... 0.26 0.66
chr1.LjT07G07 1 10832117
10894088
62 7 r 10 10.nc pseudo (20060328a)... 0.18 0.72
chr1.LjT27C19 1 11835896
11932365
96.5 12 r 22 10.nd partial (20050613a)... 0.16 0.73
chr1.CM0036 1 12011537
12209501
198 11 f 36 10.nc (20050613a)... 0.18 0.56
chr1.CM0955 1 12838606
13065841
227.2 13 f 31 10.nd retro (20050613a)... 0.13 0.31
chr1.LjT35H06 1 13221401
13348714
127.3 21 f 19 10.nc retro pseudo (20060412a)... 0.19 0.43
chr1.CM0094 1 13511873
14036908
525 20 f 80 10.nc retro (20060615a)... 0.23 0.57
chr1.CM0063 1 14677582
14972967
295.4 10 f 47 10.nd retro (20050613a)... 0.14 0.57
chr1.LjT40H13 1 15605191
15724767
119.6 4 r 22 10.nd partial (20050613a)... 0.2 0.82
chr1.CM0982 1 17309601
17568519
258.9 18 f 46 10.nd est BG661999 (20050613a)... 0.24 0.68
chr1.LjT39K06 1 17883531
17979184
95.7 13 r 17 10.nd partial (20050613a)... 0.3 0.74
chr1.LjT20M22 1 18064387
18140998
76.6 2 f 14 10.nd est GENLF042G09.r.abd (20060615a)... 0.47 0.81
chr1.CM0050 1 18768151
18972207
204.1 13 r 39 10.nc partial (20050613a)... 0.36 0.64
chr1.LjT45O14 1 19047243
19165254
118 8 f 29 10.nd pseudo partial (20050613a)... 0.21 0.54
chr1.CM0133 1 21127712
22158256
1030.5 18 r 156 10.nc partial (20051018a)... 0.22 0.57
chr1.CM0433 1 22238098
22434826
196.7 9 r 34 10.nd (20051102a)... 0.3 0.53
chr1.LjT33H07 1 22508073
22617821
109.7 9 r 20 10.nd partial (20050613a)... 0.22 0.75
chr1.LjT03I11 1 22699891
22788958
89.1 3 f 15 10.nd retro (20050613a)... 0.25 0.82
chr1.LjT04O21 1 23096631
23219036
122.4 6 f 24 10.nd partial (20050613a)... 0.19 0.74
chr1.CM0442 1 23294551
23504250
209.7 13 f 44 10.nd retro partial (20050613a)... 0.28 0.62
chr1.CM0760 1 23814407
24008349
193.9 12 f 30 10.nc partial (20060418a)... 0.28 0.57
chr1.LjT36G06 1 24320941
24427628
106.7 11 r 15 10.nc partial (20030722a)... 0.25 0.48
chr1.LjT12B11 1 24504844
24569577
64.7 3 f 7 10.nd partial (20050613a)... 0.28 0.8
chr1.LjT35C22 1 24654050
24737406
83.4 13 f 15 10.nc (20060330a)... 0.41 0.83
chr1.LjT04O06 1 25686486
25787884
101.4 12 r 14 10.nc (20030820a)... 0.29 0.5
chr1.CM0233 1 27043044
27348214
305.2 18 r 59 10.nc retro pseudo partial (20050613a)... 0.19 0.56
chr1.CM0195 1 27434576
27735065
300.5 17 f 56 10.nd (20050617a)... 0.19 0.68
chr1.CM0275 1 28054613
28228933
174.3 17 r 22 10.nc retro partial (20050613a)... 0.22 0.5
chr1.LjT34C24 1 28314120
28401516
87.4 18 f 10 10.nc partial (20060309a)... 0.37 0.8
chr1.CM0121 1 30286484
30448441
162 14 f 35 10.nd pseudo partial (20050613a)... 0.22 0.8
chr1.CM0178 1 30522681
30867156
344.5 32 r 64 10.nd pseudo partial (20050617a)... 0.25 0.65
chr1.LjB18K24 1 30941291
31050573
109.3 7 f 13 10.nd retro partial (20060615a)... 0.33 0.74
chr1.LjT01D01 1 31680818
31767286
86.5 8 f 17 10.nd pseudo partial (20050613a)... 0.18 0.38
chr1.LjT45A19 1 32398832
32495784
97 2 f 11 10.nd (20050613a)... 0.18 0.6
chr1.LjT09E07 1 33122856
33220131
97.3 19 f 13 10.nc partial (20060407a)... 0.22 0.33
chr1.CM1255 1 33847653
34064780
217.1 11 f 42 10.nc (20050613a)... 0.23 0.52
chr1.LjT06I14 1 34139631
34225759
86.1 12 f 10 10.nc partial (20060405a)... 0.27 0.45
chr1.CM0101 1 35111478
35285610
174.1 10 r 35 10.nc retro pseudo partial (20050613a)... 0.15 0.44
chr1.CM0284 1 36637198
36992040
354.8 18 r 54 10.nd (20050613a)... 0.31 0.68
chr1.LjT10B06 1 38252439
38332741
80.3 11 f 13 10.nd partial (20051205a)... 0.23 0.46
chr1.LjT08E15 1 38654579
38735485
80.9 14 f 17 10.nd (20050613a)... 0.19 0.46
chr1.LjT16J16 1 38828965
38909185
80.2 6 r 13 10.nd (20050617a)... 0.24 0.38
chr1.CM1413 1 39223771
39388363
164.6 9 r 32 10.nd pseudo partial (20050613a)... 0.41 0.79
chr1.CM0393 1 39705311
39931256
225.9 4 r 55 10.nd partial (20050617a)... 0.32 0.66
chr1.CM0051 1 40250120
40480410
230.3 29 r 37 10.nc (20050617a)... 0.18 0.41
chr1.LjT29L18 1 40555756
40644620
88.9 6 f 13 10.nd (20060615a)... 0.17 0.5
chr1.CM0141 1 40973955
41293205
319.3 10 f 64 10.nd (20050613a)... 0.22 0.65
chr1.CM0315 1 41368922
41641829
272.9 17 r 52 10.nd retro (20050613a)... 0.15 0.57
chr1.LjT11G20 1 41953081
42000288
47.2 4 f 7 10.nd pseudo partial (20050613a)... 0.3 0.51
chr1.CM0410 1 42655657
43006442
350.8 9 f 55 10.nc retro (20060424a)... 0.2 0.56
chr1.LjT34H22 1 43091636
43227710
136.1 5 f 35 10.nd pseudo (20050613a)... 0.25 0.54
chr1.CM0163 1 43543082
43705278
162.2 7 r 26 10.nc (20050613a)... 0.24 0.72
chr1.CM0215 1 44969138
45147739
178.6 10 f 22 10.nd retro (20050617a)... 0.29 0.71
chr1.LjB10L14 1 45466586
45563156
96.6 7 f 10 10.nc (20060313a)... 0.13 0.38
chr1.LjT14I13 1 46190576
46312177
121.6 14 f 31 10.nd (20050617a)... 0.26 0.6
chr1.LjT23O20 1 46626206
46736518
110.3 3 r 22 10.nd retro partial (20050613a)... 0.23 0.58
chr1.LjT36P09 1 47054422
47162845
108.4 8 f 25 10.nd pseudo partial (20050613a)... 0.12 0.53

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