GmGDB v.1 Loci/Annotations
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| Locus ID |
Gen ome |
Chr | From/To | Len (kb) |
Intron Count |
Str | # Tran |
Locus Description (hover for complete description) |
Gene | Gene Structure Annotation Project | Cov er age  |
Inte grity |
yrGATE Anno Count |
yrGATE Anno Class |
yrGATE Gene Product | Anno Status (click to view) |
Annotate it! |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Glyma01g00270 | 1 | 51481 61502 |
10 | 16 | r | 1 | PTHR18968:SF3 AT1G68890.1 2-oxoglutarate decarboxylase/ hydro-lyase/ magnes... | 0.2 | 0.06 | ||||||||
| Glyma01g00300 | 1 | 90693 95580 |
4.9 | 2 | r | 2 | PF10551,PF04434 AT4G38170.1 FRS9 FRS9 (FAR1-related sequence 9); zinc ion b... | 0.63 | 0.5 | ||||||||
| Glyma01g00320 | 1 | 116300 127990 |
11.7 | 3 | f | 3 | PF03101,PF10551,PF04434 AT4G38180.1 FRS5 FRS5 (FAR1-related sequence 5); zi... | BCB 568,BIO468 | 0.82 | 0.48 | |||||||
| Glyma01g00380 | 1 | 170877 193446 |
22.6 | 18 | f | 1 | AT5G58100.1 unknown protein... | 0.77 | 0.73 | ||||||||
| Glyma01g00400 | 1 | 196424 202040 |
5.6 | 6 | f | 4 | PF09229 AT5G58110.1 ATPase activator/ chaperone binding... | 0.99 | 0.95 | ||||||||
| Glyma01g00410 | 1 | 205764 213610 |
7.8 | 6 | f | 1 | PF03040 AT4G31040.1 proton extrusion protein-related... | 0.78 | 0.53 | ||||||||
| Glyma01g00420 | 1 | 221875 225821 |
3.9 | 4 | r | 1 | PF02985 AT2G07170.1 binding... | 0.82 | 0.76 | ||||||||
| Glyma01g00430 | 1 | 227279 237945 |
10.7 | 18 | r | 2 | PF00432 KOG0497 5.4.99.8 K01853 AT2G07050.1 CAS1 CAS1 (cycloartenol synthas... | 0.98 | 0.97 | ||||||||
| Glyma01g00440 | 1 | 244179 244560 |
0.4 | 0 | f | 1 | PF02453 PTHR10994 AT3G19460.1 reticulon family protein (RTNLB11)... | 0 | |||||||||
| Glyma01g00450 | 1 | 248919 260637 |
11.7 | 17 | f | 1 | PF00432 KOG0497 5.4.99.8 K01853 AT2G07050.1 CAS1 CAS1 (cycloartenol synthas... | 0.2 | 0.17 | ||||||||
| Glyma01g00460 | 1 | 260800 269340 |
8.5 | 17 | r | 1 | PF00400,PF04192 PTHR13889 KOG1539 AT4G04940.1 transducin family protein / W... | 0.79 | 0.64 | ||||||||
| Glyma01g00470 | 1 | 269735 273995 |
4.3 | 4 | f | 1 | AT3G10572.1 3-phosphoinositide-dependent protein kinase-1, putative... | 1 | 0.96 | ||||||||
| Glyma01g00480 | 1 | 275574 278576 |
3 | 1 | f | 1 | PF08263,PF00560 PTHR23258 AT5G35390.1 leucine-rich repeat transmembrane pro... | 0.63 | 0.28 | ||||||||
| Glyma01g00490 | 1 | 281402 284938 |
3.5 | 7 | f | 1 | PF00582,PF00069,PF07714 PTHR23258 KOG1187 AT2G24370.1 ATP binding / kinase/... | 0 | |||||||||
| Glyma01g00500 | 1 | 286057 288682 |
2.6 | 1 | f | 1 | PF04570 AT5G20700.1 senescence-associated protein-related... | 1 | 0.98 | ||||||||
| Glyma01g00510 | 1 | 291487 297462 |
6 | 13 | r | 1 | PF02362,PF06507,PF02309 AT1G19220.1 ARF19 ARF19 (AUXIN RESPONSE FACTOR 19);... | 0.6 | 0.48 | ||||||||
| Glyma01g00520 | 1 | 303950 308127 |
4.2 | 5 | r | 1 | PF07496,PF01429 AT5G35330.1 MBD02 MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN ... | 0.71 | 0.67 | ||||||||
| Glyma01g00530 | 1 | 318707 322901 |
4.2 | 3 | f | 1 | PF02386 AT4G10310.1 HKT1 HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion ... | 0.61 | 0.2 | ||||||||
| Glyma01g00540 | 1 | 329250 331862 |
2.6 | 3 | f | 1 | AT2G06925.1 PLA2-ALPHA PLA2-ALPHA; phospholipase A2... | 0.97 | 0.96 | ||||||||
| Glyma01g00550 | 1 | 332865 334841 |
2 | 6 | r | 1 | AT4G20010.1 PTAC9 PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9); single-strand... | 0 | |||||||||
| Glyma01g00560 | 1 | 335283 337035 |
1.8 | 0 | f | 1 | PF01663 PTHR10151 KOG2645 AT4G29680.1 type I phosphodiesterase/nucleotide p... | 1 | 0.96 | ||||||||
| Glyma01g00570 | 1 | 339964 343362 |
3.4 | 3 | f | 1 | PF00085 PTHR10438 KOG0907 AT4G29670.1 ACHT2 thioredoxin family protein... | 1 | 0.99 | ||||||||
| Glyma01g00580 | 1 | 344018 344555 |
0.5 | 0 | f | 1 | PF03208 PTHR19317 KOG3142 AT1G55190.1 PRA7 PRA7... | 0 | |||||||||
| Glyma01g00590 | 1 | 346640 350011 |
3.4 | 7 | f | 1 | PF08241 PTHR10108 AT4G29590.1 methyltransferase... | 0.5 | 0.41 | ||||||||
| Glyma01g00600 | 1 | 363449 365232 |
1.8 | 2 | r | 1 | PF00098,PF00249 AT5G56840.1 DNA-binding family protein... | 0.98 | 0.96 | ||||||||
| Glyma01g00610 | 1 | 370004 372382 |
2.4 | 3 | f | 2 | AT4G18400.1 unknown protein... | 0.98 | 0.95 | ||||||||
| Glyma01g00620 | 1 | 372780 375286 |
2.5 | 7 | r | 1 | PF00132 AT4G29540.1 bacterial transferase hexapeptide repeat-containing pro... | 0 | |||||||||
| Glyma01g00630 | 1 | 377144 378834 |
1.7 | 2 | f | 1 | AT5G56780.1 unknown protein... | 0 | |||||||||
| Glyma01g00640 | 1 | 379246 381802 |
2.6 | 2 | f | 1 | PF01535 PTHR10483 AT2G15690.1 pentatricopeptide (PPR) repeat-containing pro... | BCB 568,BIO468 | 0.92 | 0.33 | 1 |  |
|||||
| Glyma01g00650 | 1 | 381847 384315 |
2.5 | 9 | r | 1 | PF00153 PTHR11896 KOG0752 AT4G26180.1 mitochondrial substrate carrier famil... | 0 | |||||||||
| Glyma01g00660 | 1 | 384776 386985 |
2.2 | 10 | f | 1 | PF03096 PTHR11034 KOG2931 AT5G56750.1 Ndr family protein... | 0 | |||||||||
| Glyma01g00670 | 1 | 387861 390922 |
3.1 | 4 | r | 1 | AT5G11780.1 unknown protein... | BCB 568,BIO468 | 0.81 | 0.61 | |||||||
| Glyma01g00680 | 1 | 391613 396922 |
5.3 | 6 | f | 1 | AT4G29520.1 unknown protein... | 1 | 0.97 | ||||||||
| Glyma01g00690 | 1 | 397410 400521 |
3.1 | 8 | r | 2 | PF08242,PF08241 PTHR11006 KOG1499 K00599 AT4G29510.1 PRMT11 PRMT11 (ARGININ... | 1 | 0.97 | ||||||||
| Glyma01g00700 | 1 | 411368 413183 |
1.8 | 2 | f | 1 | PF00155 PTHR11751 KOG0256 AT4G26200.1 ACS7 ACS7; 1-aminocyclopropane-1-carb... | 0 | |||||||||
| Glyma01g00710 | 1 | 415331 417645 |
2.3 | 2 | f | 1 | AT4G29460.1 phospholipase A2 gamma, secretory low molecular weight... | 1 | 0.99 | ||||||||
| Glyma01g00720 | 1 | 419047 423878 |
4.8 | 9 | f | 1 | PF03398 PTHR12161 KOG2027 AT2G19710.1 unknown protein... | 0.49 | 0.2 | ||||||||
| Glyma01g00730 | 1 | 425547 427838 |
2.3 | 5 | f | 4 | PF01596 PTHR10509 KOG1663 AT4G26220.1 caffeoyl-CoA 3-O-methyltransferase, p... | 0.96 | 0.98 | ||||||||
| Glyma01g00740 | 1 | 429473 430676 |
1.2 | 2 | f | 2 | PF01198 PTHR10956 KOG0893 K02910 AT2G19740.1 60S ribosomal protein L31 (RPL... | 0.91 | 0.95 | ||||||||
| Glyma01g00750 | 1 | 431194 433007 |
1.8 | 5 | r | 1 | PF01535 PTHR10483 AT3G14330.1 pentatricopeptide (PPR) repeat-containing pro... | 0 | |||||||||
| Glyma01g00760 | 1 | 434482 437551 |
3.1 | 7 | f | 2 | PF03357 PTHR22761 KOG1656 AT4G29160.1 SNF7.1 SNF7.1... | 0.92 | 0.98 | ||||||||
| Glyma01g00770 | 1 | 439160 439492 |
0.3 | 1 | r | 1 | PF06376 AT3G61640.1 AGP20 AGP20... | 1 | 0.9 | ||||||||
| Glyma01g00780 | 1 | 442090 445177 |
3.1 | 9 | r | 1 | PF03962 KOG3433 AT4G29170.1 ATMND1 ATMND1... | 1 | 0.98 | ||||||||
| Glyma01g00790 | 1 | 447263 453180 |
5.9 | 12 | f | 1 | PF00560,PF07714,PF00069 PTHR23258 KOG1187 AT4G29450.1 leucine-rich repeat p... | 0.64 | 0.44 | ||||||||
| Glyma01g00800 | 1 | 454185 455388 |
1.2 | 3 | f | 1 | PTHR22761 KOG1656 AT4G29160.1 SNF7.1 SNF7.1... | 0 | |||||||||
| Glyma01g00810 | 1 | 458304 459177 |
0.9 | 2 | r | 1 | PF00249 PTHR10641 AT5G65790.1 MYB68 MYB68 (MYB DOMAIN PROTEIN 68); DNA bind... | BCB 568,BIO468 | 0.99 | 0.6 | 4 |  |
|||||
| Glyma01g00820 | 1 | 464751 466345 |
1.6 | 0 | r | 1 | PF00642 PTHR14493 KOG1595 AT2G19810.1 zinc finger (CCCH-type) family protei... | 0.97 | 0.96 | ||||||||
| Glyma01g00830 | 1 | 491322 493622 |
2.3 | 1 | r | 1 | PF03108,PF10551,PF04434,PF00098 AT1G64255.1 SWIM zinc finger family protein... | 0 | |||||||||
| Glyma01g00840 | 1 | 505409 508255 |
2.8 | 9 | f | 4 | PF05153 PTHR12588 KOG1573 AT2G19800.1 MIOX2 MIOX2 (MYO-INOSITOL OXYGENASE 2... | 0.96 | 0.96 | ||||||||
| Glyma01g00850 | 1 | 512040 516295 |
4.3 | 6 | f | 1 | PF01019 PTHR11686 KOG2410 AT4G29210.1 GGT4 GGT4 (GAMMA-GLUTAMYL TRANSPEPTID... | 0.48 | 0.44 | ||||||||
| Glyma01g00860 | 1 | 518297 520281 |
2 | 3 | r | 3 | PF01217 PTHR11753 KOG0934 AT2G19790.1 clathrin adaptor complex small chain ... | 1 | 0.96 | ||||||||
| Glyma01g00870 | 1 | 523885 528879 |
5 | 12 | r | 2 | PF00365 PTHR13697 KOG2440 2.7.1.11 K00850 AT4G26270.1 PFK3 PFK3 (PHOSPHOFRU... | 0.87 | 0.89 | ||||||||
| Glyma01g00880 | 1 | 544680 550458 |
5.8 | 6 | f | 1 | PF02365 AT4G29230.1 anac075 anac075 (Arabidopsis NAC domain containing prot... | 0.71 | 0.71 | ||||||||
| Glyma01g00890 | 1 | 560069 562443 |
2.4 | 1 | f | 1 | PF08263,PF00560 PTHR23258 AT4G29240.1 leucine-rich repeat family protein / ... | 0.96 | 0.32 | ||||||||
| Glyma01g00900 | 1 | 562675 565921 |
3.2 | 5 | r | 1 | PF03767 AT4G29260.1 acid phosphatase class B family protein... | 0 | |||||||||
| Glyma01g00910 | 1 | 567591 571678 |
4.1 | 1 | r | 1 | PF06219 AT4G29310.1 unknown protein... | 0 | |||||||||
| Glyma01g00920 | 1 | 576504 579920 |
3.4 | 2 | f | 1 | PF00235 PTHR11604 KOG1755 AT4G29340.1 PRF4 PRF4 (PROFILIN 4); actin binding... | 0 | 0 | ||||||||
| Glyma01g00930 | 1 | 585739 587056 |
1.3 | 1 | f | 1 | AT5G56550.1 OXS3 OXS3 (OXIDATIVE STRESS 3)... | 1 | 0.97 | ||||||||
| Glyma01g00940 | 1 | 588234 598356 |
10.1 | 17 | r | 1 | PF03485,PF00750,PF05746 PTHR11956 KOG4426 AT4G26300.1 emb1027 emb1027 (embr... | 0.78 | 0.75 | ||||||||
| Glyma01g00950 | 1 | 599225 599816 |
0.6 | 0 | f | 1 | PTHR12626:SF2 ... | 0.97 | 0.69 | ||||||||
| Glyma01g00960 | 1 | 604339 612760 |
8.4 | 17 | f | 3 | PF03485,PF00750,PF05746 PTHR11956 KOG4426 AT4G26300.1 emb1027 emb1027 (embr... | 1 | 0.98 | ||||||||
| Glyma01g00980 | 1 | 627759 641836 |
14.1 | 24 | f | 1 | PF04565,PF04566,PF04567,PF00562,PF04560 PTHR20856 2.7.7.6 K03021 AT5G45140.... | 0.78 | 0.68 | ||||||||
| Glyma01g00990 | 1 | 643608 651049 |
7.4 | 11 | f | 1 | PF00069,PF02985,PF00400 PTHR23257 KOG1240 2.7.11.1 K08333 AT4G29380.1 prote... | 0.13 | 0.31 | ||||||||
| Glyma01g01000 | 1 | 652530 658011 |
5.5 | 11 | r | 2 | PF02225,PF04389,PF04253 PTHR10404 KOG2195 AT5G19740.1 peptidase M28 family ... | 0.75 | 0.85 | ||||||||
| Glyma01g01010 | 1 | 663913 668593 |
4.7 | 4 | f | 2 | PF01095 3.1.1.11 K01051 AT5G19730.1 pectinesterase family protein... | 0.2 | 0.22 | ||||||||
| Glyma01g01020 | 1 | 670903 674313 |
3.4 | 4 | f | 1 | AT3G51100.1 unknown protein... | 0.99 | 0.97 | ||||||||
| Glyma01g01030 | 1 | 681750 683275 |
1.5 | 3 | r | 1 | PF00612 AT3G16490.1 IQD26 IQD26 (IQ-domain 26); calmodulin binding... | 0 | |||||||||
| Glyma01g01040 | 1 | 707274 708720 |
1.4 | 5 | f | 1 | ID=PAC:16242987;Name=Glyma01g01040.1;PACid=16242987;Parent=Glyma01g01040... | 0.44 | 0.13 | ||||||||
| Glyma01g01050 | 1 | 707329 708360 |
1 | 0 | r | 1 | PF01554 PTHR11206 AT4G29140.1 MATE efflux protein-related... | 0.49 | 0.75 | ||||||||
| Glyma01g01060 | 1 | 729912 735082 |
5.2 | 9 | f | 3 | PF00349,PF03727 PTHR19443 KOG1369 2.7.1.1 K00844 AT4G29130.1 HXK1 HXK1 (HEX... | 1 | 0.95 | ||||||||
| Glyma01g01070 | 1 | 736353 740661 |
4.3 | 8 | f | 1 | PF00349,PF03727 PTHR19443 KOG1369 2.7.1.1 K00844 AT4G29130.1 HXK1 HXK1 (HEX... | 0.48 | 0.35 | ||||||||
| Glyma01g01080 | 1 | 741725 745125 |
3.4 | 1 | r | 1 | PF08263,PF00560,PF00069,PF07714 PTHR23258 KOG1187 AT5G25930.1 leucine-rich ... | 0.53 | 0.81 | ||||||||
| Glyma01g01090 | 1 | 746970 750314 |
3.3 | 1 | r | 1 | PF08263,PF00560,PF00069,PF07714 PTHR23258 KOG1187 AT5G25930.1 leucine-rich ... | 0 | |||||||||
| Glyma01g01110 | 1 | 760040 761175 |
1.1 | 0 | r | 1 | PF02466 PTHR10485 KOG1652 AT2G37410.1 ATTIM17-2 ATTIM17-2; P-P-bond-hydroly... | 0.99 | 0.98 | ||||||||
| Glyma01g01120 | 1 | 764473 771585 |
7.1 | 19 | f | 1 | PF01426,PF00145,PF00385 PTHR10629 2.1.1.37 K00558 AT1G69770.1 CMT3 CMT3 (ch... | 0.37 | 0.41 | ||||||||
| Glyma01g01130 | 1 | 775406 779415 |
4 | 13 | f | 1 | PF00535 KOG2547 AT2G19880.1 ceramide glucosyltransferase, putative... | 0.26 | 0.17 | ||||||||
| Glyma01g01140 | 1 | 779768 783425 |
3.7 | 6 | r | 2 | PF00173 PTHR19359 AT1G60660.1 CB5LP CB5LP (CYTOCHROME B5-LIKE PROTEIN); hem... | 1 | 0.98 | ||||||||
| Glyma01g01150 | 1 | 786891 790824 |
3.9 | 4 | f | 1 | PF06911 PTHR21068 AT4G15450.1 unknown protein... | 0 | |||||||||
| Glyma01g01160 | 1 | 801989 811935 |
9.9 | 7 | f | 1 | PF00664,PF00005 PTHR19242 KOG0055 AT3G28345.1 ABC transporter family protei... | 0 | |||||||||
| Glyma01g01170 | 1 | 817761 822867 |
5.1 | 10 | f | 2 | PF03171 PTHR10209 KOG0143 K06892 AT1G35190.1 oxidoreductase, 2OG-Fe(II) oxy... | 0.95 | 0.95 | ||||||||
| Glyma01g01180 | 1 | 826833 831684 |
4.9 | 18 | r | 3 | PF00390,PF03949 PTHR23406 KOG1257 1.1.1.40 K00029 AT1G79750.1 ATNADP-ME4 AT... | 0.98 | 0.95 | ||||||||
| Glyma01g01190 | 1 | 837867 839526 |
1.7 | 1 | r | 1 | PF02731 PTHR12096 KOG2441 K06063 AT1G77180.1 chromatin protein family... | 1 | 0.3 | ||||||||
| Glyma01g01210 | 1 | 841688 852891 |
11.2 | 16 | r | 1 | PF05183 PTHR23079 KOG0988 AT2G19910.1 RNA-dependent RNA polymerase family p... | 0.33 | 0.25 | ||||||||
| Glyma01g01220 | 1 | 861799 864306 |
2.5 | 2 | f | 2 | KOG4708 AT3G18760.1 ribosomal protein S6 family protein... | 0.95 | 0.82 | ||||||||
| Glyma01g01230 | 1 | 864986 873299 |
8.3 | 22 | r | 1 | PTHR13815 KOG4677 AT2G19950.1 GC1 GC1 (Golgin Candidate 1)... | 0.67 | 0.63 | ||||||||
| Glyma01g01240 | 1 | 882439 883249 |
0.8 | 0 | r | 1 | AT1G52140.1 unknown protein... | 1 | 0.95 | ||||||||
| Glyma01g01260 | 1 | 901471 902792 |
1.3 | 0 | f | 1 | PF10604 AT2G25770.1 unknown protein... | 0.98 | 0.96 | ||||||||
| Glyma01g01270 | 1 | 908209 916862 |
8.7 | 22 | f | 1 | PF02516 PTHR13872 KOG2292 AT5G19690.1 STT3A STT3A (STAUROSPORIN AND TEMPERA... | 0.54 | 0.53 | ||||||||
| Glyma01g01280 | 1 | 919767 925783 |
6 | 6 | r | 1 | PF05664 AT2G25800.1 unknown protein... | 0.45 | 0.28 | ||||||||
| Glyma01g01290 | 1 | 934524 936533 |
2 | 4 | f | 1 | AT4G13660.1 PRR2 PRR2 (PINORESINOL REDUCTASE 2); pinoresinol reductase... | BCB 568,BIO468 | 0.8 | 0.32 | |||||||
| Glyma01g01300 | 1 | 937365 939890 |
2.5 | 5 | r | 1 | PF00249 AT5G45580.1 transcription factor... | 0.11 | 0.06 | ||||||||
| Glyma01g01310 | 1 | 952598 956615 |
4 | 1 | f | 2 | ID=PAC:16243020;Name=Glyma01g01310.1;PACid=16243020;Parent=Glyma01g01310... | 0.96 | 0.66 | ||||||||
| Glyma01g01330 | 1 | 959544 963251 |
3.7 | 3 | f | 1 | PF01632 AT5G45590.1 unknown protein... | 0.99 | 0.98 | ||||||||
| Glyma01g01340 | 1 | 967052 971230 |
4.2 | 6 | r | 1 | PF04172 AT1G32080.1 membrane protein, putative... | 0.95 | 0.96 | ||||||||
| Glyma01g01350 | 1 | 972976 978178 |
5.2 | 5 | r | 1 | PF00501 PTHR11968 KOG1176 AT4G19010.1 4-coumarate--CoA ligase family protei... | 0.34 | 0.52 | ||||||||
| Glyma01g01360 | 1 | 980335 987294 |
7 | 10 | r | 1 | PF02714 PTHR13018 KOG1134 AT1G32090.1 early-responsive to dehydration prote... | 0.78 | 0.55 | ||||||||
| Glyma01g01370 | 1 | 992725 997069 |
4.3 | 4 | r | 1 | PF00485 PTHR10285 KOG4203 2.7.1.19 K00855 AT1G32060.1 PRK PRK (PHOSPHORIBUL... | 1 | 0.99 | ||||||||
| Glyma01g01380 | 1 | 1000911 1006549 |
5.6 | 11 | r | 2 | PF04144 PTHR10687 KOG3088 AT1G32050.1 secretory carrier membrane protein (S... | 0.98 | 0.97 | ||||||||
| Glyma01g01390 | 1 | 1008976 1013477 |
4.5 | 12 | f | 1 | PF00270,PF00271 PTHR10967 KOG0331 AT1G31970.1 STRS1 STRS1 (STRESS RESPONSE ... | 1 | 0.95 | ||||||||
| Glyma01g01400 | 1 | 1018633 1021550 |
2.9 | 2 | f | 1 | PF00931,PF00560 PTHR23155 KOG4658 AT3G07040.1 RPM1 RPM1 (RESISTANCE TO P. S... | BCB 568,BIO468 | 1 | 0.3 |