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CrGDB v.0 Loci/Annotations  ?

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Locus ID
Gen
ome
Chr From/To Len
(kb)
Intron
Count
Str #
Tran
Locus Description
(hover for complete description)
Gene Gene Structure Annotation Project Cov
er
age
?
Inte
grity
?
yrGATE
Anno
Count
yrGATE
Anno
Class
?
yrGATE Gene Product Anno
Status
(click to view)
Annotate it!
Cre01.g000050.t1 1 8846
14517
5.7 3 f 1 PF02042 AT4G35590.1 RWP-RK domain-containing protein... 0
Cre01.g000100.t1 1 14676
24737
10.1 12 f 1 ID=PAC:19866397;Name=Cre01.g000100.t1.2;pacid=19866397;longest=1;Parent=Cre... 0
Cre01.g000150.t1 1 25206
30447
5.2 4 f 1 PF02535 PTHR11040 KOG1558 AT2G04032.1 ZIP7 zinc transporter 7 precursor... 0.07 0.27
Cre01.g000200.t1 1 30455
35415
5 11 r 1 ID=PAC:19865443;Name=Cre01.g000200.t1.2;pacid=19865443;longest=1;Parent=Cre... 0
Cre01.g000250.t1 1 35490
37905
2.4 3 r 1 PF09335 PTHR12677 KOG3140 AT1G22850.1 SNARE associated Golgi protein fam... 0.56 0.47
Cre01.g000300.t1 1 38006
41821
3.8 7 f 1 PF00561 PTHR10992 KOG4409 AT4G24160.1 alpha/beta-Hydrolases superfamily ... 0.53 0.6
Cre01.g000350.t1 1 41876
44605
2.7 5 r 1 PF00175 AT1G15140.1 FAD/NAD(P)-binding oxidoreductase... 0.9 0.94
Cre01.g000400.t1 1 44660
48785
4.1 10 r 1 PF03407 PTHR10994:SF5 AT2G35610.1 XEG113 xyloglucanase 113... 0.1 0.15
Cre01.g000450.t1 1 48879
54467
5.6 8 f 1 PF03407 PTHR10994:SF5 AT2G35610.1 XEG113 xyloglucanase 113... 0.48 0.4
Cre01.g000500.t1 1 54516
61567
7.1 9 f 1 PF03407 PTHR10994:SF5 AT2G35610.1 XEG113 xyloglucanase 113... 0.56 0.47
Cre01.g000550.t1 1 61716
68167
6.5 8 f 1 ID=PAC:19866284;Name=Cre01.g000550.t1.1;pacid=19866284;longest=1;Parent=Cre... 0.05 0.12
Cre01.g000600.t1 1 68193
73415
5.2 10 r 1 PF08154,PF00400 PTHR19848 KOG0271 AT5G52820.1 WD-40 repeat family protei... 0
Cre01.g000650.t1 1 74046
81977
7.9 17 f 1 PF02727,PF02728,PF01179 PTHR10638 KOG1186 AT2G42490.1 Copper amine oxida... 0
Cre01.g000700.t1 1 82010
88635
6.6 9 r 1 PF00560,PF00097 PTHR22764 KOG1493 AT3G03550.1 RING/U-box superfamily pro... 0
Cre01.g000750.t1 1 88986
96065
7.1 10 r 1 PF00097 PTHR12183 KOG3879 AT4G24204.3 RING/U-box superfamily protein... 0.07 0.3
Cre01.g000800.t1 1 96697
99223
2.5 5 r 1 AT1G78995.1 ... 1 1
Cre01.g000850.t1 1 99704
101705
2 2 r 1 PF11460 AT3G17930.1 ... 0.98 0.96
Cre01.g000900.t1 1 101826
106034
4.2 7 f 1 PF07082 AT5G47860.1 Protein of unknown function (DUF1350)... 0.43 0.37
Cre01.g000950.t1 1 106826
111817
5 7 f 1 PF07690 PTHR10074 AT5G64500.1 Major facilitator superfamily protein... 0
Cre01.g001000.t1 1 111880
118585
6.7 9 r 1 ID=PAC:19865272;Name=Cre01.g001000.t1.2;pacid=19865272;longest=1;Parent=Cre... 0
Cre01.g001050.t1 1 118767
119831
1.1 0 f 1 ID=PAC:19865915;Name=Cre01.g001050.t1.1;pacid=19865915;longest=1;Parent=Cre... 1 0.79
Cre01.g001100.t1 1 119979
124635
4.7 8 r 1 ID=PAC:19865066;Name=Cre01.g001100.t1.1;pacid=19865066;longest=1;Parent=Cre... 0.41 0.19
Cre01.g001150.t1 1 124756
138683
13.9 11 f 1 PTHR10499 ... 0
Cre01.g001200.t1 1 139266
150347
11.1 12 f 1 PF00069 PTHR23257 AT3G46920.1 Protein kinase superfamily protein with o... 0
Cre01.g001237.t1 1 150396
152443
2 0 f 1 ID=PAC:19866381;Name=Cre01.g001237.t1.1;pacid=19866381;longest=1;Parent=Cre... 0.99 0.76
Cre01.g001250.t1 1 153586
164231
10.6 4 f 1 ID=PAC:19865395;Name=Cre01.g001250.t1.1;pacid=19865395;longest=1;Parent=Cre... 0
Cre01.g001300.t1 1 166450
196131
29.7 39 f 1 PF02415 ... 0 0.1
Cre01.g001350.t1 1 196734
204879
8.1 16 r 1 PF06472,PF00005 PTHR11384 KOG0060 AT1G54350.1 ABC transporter family pro... 0
Cre01.g001400.t1 1 204980
210900
5.9 4 f 1 PTHR10942 KOG4462 3.4.24.- K13539 AT5G42620.2 metalloendopeptidases;zinc i... 0.12 0.14
Cre01.g001450.t1 1 211250
215895
4.6 5 f 1 PF00612 ... 0
Cre01.g001500.t1 1 216454
221939
5.5 10 r 1 ID=PAC:19865772;Name=Cre01.g001500.t1.1;pacid=19865772;longest=1;Parent=Cre... 0
Cre01.g001550.t1 1 223460
227713
4.3 6 f 1 PF05198,PF00707 PTHR10938 K02520 AT2G24060.1 Translation initiation fact... 0.53 0.42
Cre01.g001600.t1 1 228680
232076
3.4 1 f 1 PF00651 PTHR23230 AT5G19330.1 ARIA ARM repeat protein interacting with ... 0.55 0.26
Cre01.g001650.t1 1 232684
237059
4.4 6 r 1 PF00023 PTHR18958 KOG4214 AT4G19150.1 Ankyrin repeat family protein... 0
Cre01.g001700.t1 1 275434
283319
7.9 12 r 1 ID=PAC:19865028;Name=Cre01.g001700.t1.2;pacid=19865028;longest=1;Parent=Cre... 0
Cre01.g001750.t1 1 287368
294187
6.8 16 r 1 PF05698 AT5G55220.1 trigger factor type chaperone family protein... 0.96 0.89
Cre01.g001800.t1 1 294290
305391
11.1 22 f 1 PF00069,PF07714 PTHR22986 KOG0583 2.7.11.1 K08857 AT3G04810.1 ATNEK2,NEK2 N... 0.07 0.11
Cre01.g001950.t1 1 305394
309849
4.5 6 r 1 ID=PAC:19865917;Name=Cre01.g001950.t1.1;pacid=19865917;longest=1;Parent=Cre... 0.14 0.14
Cre01.g002000.t1 1 310051
314219
4.2 9 r 1 PF00168 PTHR10774 AT4G34150.1 Calcium-dependent lipid-binding (CaLB dom... 0.76 0.51
Cre01.g002050.t1 1 314370
321231
6.9 10 f 1 PF00328 PTHR11567 KOG3720 ... 0
Cre01.g002100.t1 1 321280
325651
4.4 0 f 1 PF01753 PTHR13244 ... 0
Cre01.g002150.t1 1 325764
328619
2.9 2 r 1 ID=PAC:19865286;Name=Cre01.g002150.t1.1;pacid=19865286;longest=1;Parent=Cre... 0
Cre01.g002200.t1 1 328790
331234
2.4 5 f 1 PF01192 PTHR10773 KOG3405 K03014 AT5G51940.1 NRPB6A,NRPD6A,NRPE6A RNA poly... 0
Cre01.g002201.t1 1 331660
337031
5.4 7 f 1 PF04031 PTHR15002 AT5G12220.1 las1-like family protein... 0
Cre01.g002227.t1 1 337380
340591
3.2 8 f 1 ID=PAC:19865126;Name=Cre01.g002227.t1.1;pacid=19865126;longest=1;Parent=Cre... 0.51 0.21
Cre01.g002236.t1 1 340650
344211
3.6 10 f 1 ID=PAC:19865809;Name=Cre01.g002236.t1.1;pacid=19865809;longest=1;Parent=Cre... 0
Cre01.g002250.t1 1 344270
348534
4.3 4 f 1 PF00583 PTHR20958 AT1G26220.1 Acyl-CoA N-acyltransferases (NAT) superfa... 0.33 0.2
Cre01.g002300.t1 1 349195
351451
2.3 5 r 1 PF00160 PTHR11071 KOG0865 5.2.1.8 K01802 AT2G21130.1 Cyclophilin-like pept... 1 0.96
Cre01.g002350.t1 1 351800
361421
9.6 11 f 1 PF00899 PTHR10953 KOG2016 K04532 AT1G05180.1 AXR1 NAD(P)-binding Rossmann-... 0
Cre01.g002400.t1 1 362001
365705
3.7 5 r 1 PF01764 AT4G13550.1 triglyceride lipases;triglyceride lipases... 0
Cre01.g002450.t1 1 420050
421695
1.6 4 r 1 PF00168 PTHR15015:SF7 AT1G53590.1 NTMC2T6.1,NTMC2TYPE6.1 Calcium-depende... 0
Cre01.g002500.t1 1 422084
425762
3.7 7 r 1 ID=PAC:19865316;Name=Cre01.g002500.t1.1;pacid=19865316;longest=1;Parent=Cre... 1 0.96
Cre01.g002550.t1 1 425906
432461
6.6 8 f 1 PF00069 PTHR22985 KOG0598 AT1G30640.1 Protein kinase family protein... 0
Cre01.g002600.t1 1 433076
436507
3.4 2 f 1 ID=PAC:19865733;Name=Cre01.g002600.t1.1;pacid=19865733;longest=1;Parent=Cre... 0
Cre01.g002650.t1 1 437196
440157
3 1 f 1 ID=PAC:19866091;Name=Cre01.g002650.t1.1;pacid=19866091;longest=1;Parent=Cre... 0
Cre01.g002700.t1 1 440216
449153
8.9 13 f 1 PF00400 PTHR13083 KOG1333 ... 0
Cre01.g002750.t1 1 449206
453677
4.5 8 f 1 ID=PAC:19865097;Name=Cre01.g002750.t1.1;pacid=19865097;longest=1;Parent=Cre... 0
Cre01.g002800.t1 1 455716
498267
42.6 114 f 1 PF00530,PF01839,PF00704,PF00059 PTHR11177 KOG2806 AT4G19800.1 Glycosyl h... 0.02 0.1
Cre01.g002850.t1 1 498316
507847
9.5 24 f 1 ID=PAC:19866116;Name=Cre01.g002850.t1.2;pacid=19866116;longest=1;Parent=Cre... 0.08 0.18
Cre01.g002900.t1 1 507970
509625
1.7 3 r 1 ID=PAC:19865158;Name=Cre01.g002900.t1.1;pacid=19865158;longest=1;Parent=Cre... 0
Cre01.g002950.t1 1 509690
514025
4.3 5 r 1 PF06677 KOG4537 ... 0
Cre01.g003000.t1 1 514176
518757
4.6 7 f 1 ID=PAC:19865602;Name=Cre01.g003000.t1.2;pacid=19865602;longest=1;Parent=Cre... 0
Cre01.g003050.t1 1 519040
529385
10.3 18 r 1 PF04048 PTHR14146 K06111 AT3G10380.1 ATSEC8,SEC8 subunit of exocyst compl... 0
Cre01.g003100.t1 1 529626
533737
4.1 11 f 1 PF00226,PF00643,PF07649 PTHR11821 AT2G21510.1 DNAJ heat shock N-termina... 0
Cre01.g003150.t1 1 534390
540455
6.1 10 r 1 ID=PAC:19865370;Name=Cre01.g003150.t1.1;pacid=19865370;longest=1;Parent=Cre... 0
Cre01.g003200.t1 1 540616
544427
3.8 7 f 1 PF01408 PTHR22604 1.1.1.179,1.3.1.20 K00078 AT4G09670.1 Oxidoreductase fa... 0
Cre01.g003250.t1 1 544646
547007
2.4 3 f 1 PF07282 ... 0.4 0.58
Cre01.g003300.t1 1 547224
552628
5.4 12 f 1 PF01094 ... 0
Cre01.g003350.t1 1 552708
554833
2.1 3 r 1 PF00249 PTHR11821:SF29 AT5G06110.1 DnaJ domain ;Myb-like DNA-binding do... 0
Cre01.g003400.t1 1 592608
596473
3.9 8 r 1 PF00226 PTHR11821 KOG0724 K09522 AT5G06110.1 DnaJ domain ;Myb-like DNA-bi... 0
Cre01.g003450.t1 1 596594
601625
5 5 f 1 ID=PAC:19865498;Name=Cre01.g003450.t1.2;pacid=19865498;longest=1;Parent=Cre... 0.12 0.14
Cre01.g003500.t1 1 602224
628135
25.9 31 f 1 PF05188 K08735 AT3G18524.1 ATMSH2,MSH2 MUTS homolog 2... 0
Cre01.g003519.t1 1 628474
630105
1.6 2 f 1 ID=PAC:19866412;Name=Cre01.g003519.t1.1;pacid=19866412;longest=1;Parent=Cre... 0
Cre01.g003540.t1 1 657094
658240
1.1 0 f 1 ID=PAC:19865605;Name=Cre01.g003540.t1.1;pacid=19865605;longest=1;Parent=Cre... 0
Cre01.g003550.t1 1 661258
668103
6.8 9 r 1 PF00581 KOG1530 AT4G27700.1 Rhodanese/Cell cycle control phosphatase su... 0.15 0.14
Cre01.g003600.t1 1 669634
671143
1.5 0 f 1 ID=PAC:19865760;Name=Cre01.g003600.t1.1;pacid=19865760;longest=1;Parent=Cre... 0.75 0.8
Cre01.g003620.t1 1 673454
675097
1.6 1 f 1 ID=PAC:19865322;Name=Cre01.g003620.t1.1;pacid=19865322;longest=1;Parent=Cre... 0.44 0.23
Cre01.g003650.t1 1 675278
681524
6.2 8 r 1 ID=PAC:19865841;Name=Cre01.g003650.t1.2;pacid=19865841;longest=1;Parent=Cre... 0.38 0.41
Cre01.g003700.t1 1 682184
689715
7.5 6 f 1 PF10263 PTHR23099 KOG3854 ... 0
Cre01.g003750.t1 1 690824
709435
18.6 7 f 1 PTHR10217 ... 0
Cre01.g003800.t1 1 710404
721255
10.9 7 f 1 PF07714,PF00069 PTHR23257 AT3G06620.1 PAS domain-containing protein tyr... 0.05 0.12
Cre01.g003850.t1 1 723014
730637
7.6 13 f 1 PF00067 PTHR19383 KOG0157 AT2G44890.1 CYP704A1 cytochrome P450, family 70... 0
Cre01.g003900.t1 1 730684
732438
1.8 0 f 1 ID=PAC:19865379;Name=Cre01.g003900.t1.1;pacid=19865379;longest=1;Parent=Cre... 0.37 0.8
Cre01.g003950.t1 1 733795
752397
18.6 50 r 1 ID=PAC:19865334;Name=Cre01.g003950.t1.2;pacid=19865334;longest=1;Parent=Cre... 0.3 0.32
Cre01.g004000.t1 1 752454
756437
4 7 r 1 PF08855 ... 0.95 0.98
Cre01.g004050.t1 1 764478
766776
2.3 2 f 1 ID=PAC:19866085;Name=Cre01.g004050.t1.1;pacid=19866085;longest=1;Parent=Cre... 0 0.1
Cre01.g004100.t1 1 767588
769219
1.6 1 f 1 ID=PAC:19865680;Name=Cre01.g004100.t1.2;pacid=19865680;longest=1;Parent=Cre... 0
Cre01.g004124.t1 1 769358
788999
19.6 48 f 1 ID=PAC:19865387;Name=Cre01.g004124.t1.2;pacid=19865387;longest=1;Parent=Cre... 0.31 0.3
Cre01.g004150.t1 1 792358
795925
3.6 9 f 1 ID=PAC:19865021;Name=Cre01.g004150.t1.2;pacid=19865021;longest=1;Parent=Cre... 0
Cre01.g004157.t1 1 795988
810983
15 35 f 1 ID=PAC:19865375;Name=Cre01.g004157.t1.1;pacid=19865375;longest=1;Parent=Cre... 0.3 0.33
Cre01.g004200.t1 1 811142
817704
6.6 12 r 1 ID=PAC:19866248;Name=Cre01.g004200.t1.1;pacid=19866248;longest=1;Parent=Cre... 0.42 0.48
Cre01.g004250.t1 1 817835
819339
1.5 3 f 1 PF03645 PTHR21255 KOG4081 K10420 ... 1 0.98
Cre01.g004300.t1 1 819341
826093
6.8 13 r 1 PF00310,PF00733 PTHR11772 KOG0571 6.3.5.4 K01953 AT3G47340.1 ASN1,AT-ASN1,D... 1 0.97
Cre01.g004350.t1 1 826218
835623
9.4 19 f 1 PF03097 PTHR23030 KOG2220 K12200 AT1G15130.1 Endosomal targeting BRO1-lik... 0.15 0.17
Cre01.g004400.t1 1 837328
838979
1.7 3 f 1 ID=PAC:19865413;Name=Cre01.g004400.t1.1;pacid=19865413;longest=1;Parent=Cre... 0.84 0.95
Cre01.g004450.t1 1 838982
842375
3.4 9 r 1 PF07466 AT1G54520.1 ... 1 0.98
Cre01.g004500.t1 1 842508
849341
6.8 11 f 1 PF00330 PTHR11670 KOG0454 4.2.1.33,4.2.1.35 K01703 AT4G13430.1 ATLEUC1,IIL1... 1 0.92
Cre01.g004550.t1 1 849638
855892
6.3 7 f 1 PF07647,PF00536 KOG4375 ... 0.29 0.52
Cre01.g004600.t1 1 857278
870169
12.9 5 f 1 PF02042 KOG3866 AT5G53040.1 RWP-RK domain-containing protein... 0.22 0.14
Cre01.g004650.t1 1 870848
872461
1.6 1 f 1 ID=PAC:19864909;Name=Cre01.g004650.t1.1;pacid=19864909;longest=1;Parent=Cre... 1 1

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