BdGDB v.1 Loci/Annotations
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| Locus ID |
Gen ome |
Chr | From/To | Len (kb) |
Intron Count |
Str | # Tran |
Locus Description (hover for complete description) |
Gene | Gene Structure Annotation Project | Cov er age  |
Inte grity |
yrGATE Anno Count |
yrGATE Anno Class |
yrGATE Gene Product | Anno Status (click to view) |
Annotate it! |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bradi1g00200 | 1 | 10581 11638 |
1.1 | 1 | f | 1 | PF02798,PF00043 PTHR11260 KOG0406 AT1G10360.1 ATGSTU18,GST29,GSTU18 gluta... | 0 | |||||||||
| Bradi1g00210 | 1 | 18479 23039 |
4.6 | 9 | f | 1 | PF00400 PTHR19857 KOG0296 AT1G71840.1 transducin family protein / WD-40 ... | 0 | |||||||||
| Bradi1g00220 | 1 | 55668 56319 |
0.7 | 0 | f | 1 | PF03514 AT1G07530.1 ATGRAS2,GRAS2,SCL14 SCARECROW-like 14 LOC_Os12g3849... | 0 | |||||||||
| Bradi1g00227 | 1 | 59775 61313 |
1.5 | 0 | f | 1 | PF00931 AT3G07040.1 RPM1,RPS3 NB-ARC domain-containing disease resistan... | 0.54 | 0.76 | ||||||||
| Bradi1g00237 | 1 | 94978 100493 |
5.5 | 4 | f | 1 | PF00931 KOG4658 AT3G14470.1 NB-ARC domain-containing disease resistance... | 0 | |||||||||
| Bradi1g00247 | 1 | 104574 106621 |
2 | 3 | r | 1 | PTHR21251:SF7 AT4G31360.1 selenium binding LOC_Os11g47770.1 selT/selW/... | 0 | |||||||||
| Bradi1g00260 | 1 | 113302 121778 |
8.5 | 14 | f | 1 | PF00560,PF07714,PF00069 PTHR23258 AT4G29990.1 Leucine-rich repeat trans... | 0.17 | 0.1 | ||||||||
| Bradi1g00270 | 1 | 123699 126002 |
2.3 | 4 | f | 2 | PF00069,PF07714 PTHR23258 AT4G00970.1 CRK41 cysteine-rich RLK (RECEPTOR-... | 0.7 | 0.61 | ||||||||
| Bradi1g00280 | 1 | 126302 133805 |
7.5 | 11 | r | 1 | PF01554 PTHR11206 KOG1347 AT1G33110.1 MATE efflux family protein LOC_Os1... | 0 | |||||||||
| Bradi1g00290 | 1 | 150594 153007 |
2.4 | 2 | r | 1 | PTHR22930 KOG4585 AT3G55350.1 PIF / Ping-Pong family of plant transposas... | 0 | |||||||||
| Bradi1g00300 | 1 | 173241 174712 |
1.5 | 1 | f | 1 | PF01734 PTHR18958:SF28 KOG0513 AT2G26560.1 PLA IIA,PLA2A,PLP2 phospholipa... | 0 | |||||||||
| Bradi1g00310 | 1 | 201331 202797 |
1.5 | 4 | r | 1 | LOC_Os07g45630.1 retrotransposon protein, putative, Ty3-gypsy subclass, ex... | 0 | |||||||||
| Bradi1g00320 | 1 | 221297 224362 |
3.1 | 2 | f | 1 | LOC_Os09g12060.1 expressed protein... | 0 | |||||||||
| Bradi1g00330 | 1 | 228601 230810 |
2.2 | 5 | f | 1 | LOC_Os12g09220.1 expressed protein... | 0 | |||||||||
| Bradi1g00340 | 1 | 245977 247080 |
1.1 | 1 | f | 1 | LOC_Os07g02490.1 retrotransposon protein, putative, unclassified, expresse... | 0 | |||||||||
| Bradi1g00350 | 1 | 282694 283548 |
0.9 | 0 | f | 1 | PF05000,PF04998,PF04992 PTHR19376 AT4G35800.1 NRPB1,RNA_POL_II_LS,RNA_PO... | 0 | |||||||||
| Bradi1g00360 | 1 | 284014 284531 |
0.5 | 1 | f | 1 | PF04990,PF04998 PTHR19376 AT4G35800.1 NRPB1,RNA_POL_II_LS,RNA_POL_II_LSR... | 0 | |||||||||
| Bradi1g00370 | 1 | 306058 308922 |
2.9 | 2 | f | 1 | LOC_Os11g09940.1 expressed protein... | 0.35 | 0.76 | ||||||||
| Bradi1g00380 | 1 | 309730 312055 |
2.3 | 3 | f | 1 | PF01535 PTHR10483 AT3G02010.1 Pentatricopeptide repeat (PPR) superfamil... | 0 | |||||||||
| Bradi1g00390 | 1 | 324003 329816 |
5.8 | 13 | f | 1 | PTHR12984 AT2G40730.1 Protein kinase family protein with ARM repeat dom... | 0 | |||||||||
| Bradi1g00400 | 1 | 334416 335651 |
1.2 | 0 | r | 1 | PF02485 AT1G10280.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltr... | 0 | |||||||||
| Bradi1g00410 | 1 | 339782 342148 |
2.4 | 1 | r | 1 | PF07762 LOC_Os01g56900.2 expressed protein... | 0.76 | 0.91 | ||||||||
| Bradi1g00417 | 1 | 371140 372521 |
1.4 | 0 | r | 1 | PF07893 LOC_Os07g49050.1 expressed protein... | 0 | |||||||||
| Bradi1g00427 | 1 | 373745 379286 |
5.5 | 13 | f | 1 | PF06733,PF06777 PTHR11472 KOG1131 AT1G03190.1 ATXPD,UVH6 RAD3-like DNA-bi... | 0 | |||||||||
| Bradi1g00440 | 1 | 379610 380317 |
0.7 | 0 | f | 1 | AT1G04625.1 Polynucleotidyl transferase, ribonuclease H-like superfamily p... | 0 | |||||||||
| Bradi1g00450 | 1 | 383621 387469 |
3.8 | 10 | r | 2 | PF00566 PTHR22957 KOG2197 AT4G27100.1 Ypt/Rab-GAP domain of gyp1p superf... | 0.82 | 0.77 | ||||||||
| Bradi1g00460 | 1 | 388064 396012 |
7.9 | 17 | r | 2 | PF00005,PF01061,PF08370 PTHR19241 KOG0065 AT1G66950.1 ATPDR11,PDR11 pleio... | 0.32 | 0.34 | ||||||||
| Bradi1g00470 | 1 | 399150 402659 |
3.5 | 7 | f | 2 | PF02798 PTHR11260 KOG0867 AT5G41210.1 ATGSTT1,GST10,GSTT1 glutathione S-t... | 0.81 | 0.92 | ||||||||
| Bradi1g00480 | 1 | 400545 407267 |
6.7 | 10 | r | 1 | AT5G23890.1 LOC_Os03g64400.1 oxidoreductase/ transition metal ion bindin... | 0.32 | 0.21 | ||||||||
| Bradi1g00490 | 1 | 411505 412921 |
1.4 | 4 | f | 1 | AT5G41470.1 Nuclear transport factor 2 (NTF2) family protein LOC_Os03g6438... | 0.91 | 0.42 | ||||||||
| Bradi1g00497 | 1 | 416266 418233 |
2 | 4 | r | 1 | PTHR22844:SF11 AT4G00755.1 F-box family protein LOC_Os03g64360.2 OsFBX... | 0.96 | 0.97 | ||||||||
| Bradi1g00510 | 1 | 422744 424450 |
1.7 | 4 | f | 1 | PF03194 PTHR12375 KOG0796 AT5G51410.1 LUC7 N_terminus domain-containing ... | 0 | |||||||||
| Bradi1g00517 | 1 | 425618 430780 |
5.2 | 10 | r | 4 | PF00076 PTHR10432 KOG0117 AT2G44710.1 RNA-binding (RRM/RBD/RNP motifs) f... | 0.72 | 0.84 | ||||||||
| Bradi1g00530 | 1 | 435299 438047 |
2.7 | 7 | f | 1 | PF00581 PTHR18838 KOG1530 AT1G17850.2 Rhodanese/Cell cycle control phosp... | 0 | |||||||||
| Bradi1g00540 | 1 | 440902 442355 |
1.5 | 1 | f | 1 | PF00403 PTHR22814 KOG1603 AT5G24580.1 Heavy metal transport/detoxificati... | 0 | |||||||||
| Bradi1g00550 | 1 | 442977 444093 |
1.1 | 0 | r | 1 | PF00230 PTHR19139 KOG0223 AT3G54820.1 PIP2;5,PIP2D plasma membrane intrin... | 0 | |||||||||
| Bradi1g00560 | 1 | 445389 452675 |
7.3 | 12 | r | 3 | AT5G43310.2 COP1-interacting protein-related LOC_Os03g64320.1 expressed p... | 0.97 | 0.97 | ||||||||
| Bradi1g00567 | 1 | 455520 462813 |
7.3 | 16 | r | 1 | PF08513,PF00400 PTHR22847 KOG0266 AT2G32700.6 LUH LEUNIG_homolog LOC_Os03... | 0.78 | 0.72 | ||||||||
| Bradi1g00580 | 1 | 463748 468001 |
4.3 | 4 | r | 1 | PF00564,PF07714,PF00069 PTHR23257 AT1G79570.1 Protein kinase superfamil... | 0 | |||||||||
| Bradi1g00587 | 1 | 471635 473601 |
2 | 1 | r | 1 | PF07992,PF01494,PF00743 PTHR23023 KOG1399 AT4G28720.1 YUC8 Flavin-binding... | 0 | |||||||||
| Bradi1g00600 | 1 | 481247 482062 |
0.8 | 0 | r | 1 | PF05512 AT1G04560.1 AWPM-19-like family protein LOC_Os07g24000.1 AWPM... | 0.91 | 0.94 | ||||||||
| Bradi1g00607 | 1 | 485291 498694 |
13.4 | 35 | f | 1 | PF00063,PF00612,PF01843 PTHR13140 KOG0160 AT1G04160.1 ATXIB,XI-8,XI-B,XIB... | 0 | |||||||||
| Bradi1g00620 | 1 | 500221 502628 |
2.4 | 5 | f | 1 | PF00179 PTHR11621 KOG0416 AT1G63800.1 UBC5 ubiquitin-conjugating enzyme 5... | 0.97 | 0.98 | ||||||||
| Bradi1g00630 | 1 | 502638 503538 |
0.9 | 0 | r | 1 | ... | 0 | |||||||||
| Bradi1g00640 | 1 | 504334 505980 |
1.6 | 0 | f | 1 | ... | 0 | |||||||||
| Bradi1g00650 | 1 | 515951 516775 |
0.8 | 2 | f | 1 | AT1G25270.1 nodulin MtN21 /EamA-like transporter family protein LOC_Os08g3... | 0 | |||||||||
| Bradi1g00660 | 1 | 517657 518648 |
1 | 3 | f | 1 | PF00892 AT5G64700.1 nodulin MtN21 /EamA-like transporter family protei... | 0 | |||||||||
| Bradi1g00670 | 1 | 521659 522548 |
0.9 | 0 | f | 1 | PF00847 AT3G23240.1 ATERF1,ERF1 ethylene response factor 1 LOC_Os03g642... | 0 | |||||||||
| Bradi1g00677 | 1 | 525723 528532 |
2.8 | 5 | r | 1 | PF04266 PTHR12963 AT2G20410.1 RNA-binding ASCH domain protein LOC_Os03g... | 0.01 | 0 | ||||||||
| Bradi1g00690 | 1 | 534432 535942 |
1.5 | 1 | f | 1 | PF00149 PTHR11668 KOG0374 AT2G29400.1 PP1-AT,TOPP1 type one protein phosp... | 0 | |||||||||
| Bradi1g00700 | 1 | 542752 544677 |
1.9 | 0 | f | 1 | PF00083,PF07690 PTHR11600 KOG0252 K08176 AT3G54700.1 PHT1;7 phosphate tran... | 0.86 | 0.91 | ||||||||
| Bradi1g00710 | 1 | 545836 549477 |
3.6 | 7 | r | 1 | PF04784 PTHR23054 AT5G60720.1 Protein of unknown function, DUF547 LOC_O... | 0.67 | 0.64 | ||||||||
| Bradi1g00720 | 1 | 552185 555346 |
3.2 | 10 | f | 2 | PF02338 PTHR12419 KOG2605 AT5G04250.1 Cysteine proteinases superfamily p... | 0 | |||||||||
| Bradi1g00730 | 1 | 555714 559377 |
3.7 | 7 | f | 1 | PF00118 PTHR11353 KOG0356 AT2G28000.1 CH-CPN60A,CPN60A,SLP chaperonin-60a... | 0.72 | 0.72 | ||||||||
| Bradi1g00750 | 1 | 560682 564352 |
3.7 | 8 | f | 1 | PF04539,PF04542,PF04545 AT2G36990.1 ATSIG6,SIG6,SIGF,SOLDAT8 RNApolymer... | 0.98 | 1 | ||||||||
| Bradi1g00760 | 1 | 565638 570467 |
4.8 | 10 | f | 1 | PF00005,PF01061 PTHR19241 KOG0061 AT2G28070.1 ABC-2 type transporter fam... | 0 | |||||||||
| Bradi1g00770 | 1 | 577726 579029 |
1.3 | 3 | r | 1 | PF00403 PTHR22814 KOG1603 AT5G03380.1 Heavy metal transport/detoxificati... | 0 | |||||||||
| Bradi1g00780 | 1 | 579859 581594 |
1.7 | 0 | r | 1 | PF01554 PTHR11206 KOG1347 AT4G22790.1 MATE efflux family protein LOC_Os0... | 0 | |||||||||
| Bradi1g00790 | 1 | 586495 588596 |
2.1 | 3 | r | 1 | PF00657 PTHR22835:SF27 AT1G75900.1 GDSL-like Lipase/Acylhydrolase super... | 0 | |||||||||
| Bradi1g00800 | 1 | 590133 590924 |
0.8 | 0 | r | 1 | PF07893 LOC_Os05g03490.1 expressed protein... | 0 | |||||||||
| Bradi1g00807 | 1 | 591502 592877 |
1.4 | 1 | r | 1 | PF00657 PTHR22835:SF27 AT1G75900.1 GDSL-like Lipase/Acylhydrolase super... | 0 | |||||||||
| Bradi1g00820 | 1 | 594037 597877 |
3.8 | 4 | r | 1 | PF05383 PTHR22792 AT5G66100.1 winged-helix DNA-binding transcription fa... | 0.8 | 0.89 | ||||||||
| Bradi1g00830 | 1 | 599949 602041 |
2.1 | 6 | f | 1 | PF07386 AT3G60810.1 LOC_Os03g64140.1 expressed protein... | 0.96 | 0.93 | ||||||||
| Bradi1g00840 | 1 | 605902 607863 |
2 | 0 | f | 1 | PF11961,PF05003 AT5G51670.1 Protein of unknown function (DUF668) LOC_O... | 0 | |||||||||
| Bradi1g00847 | 1 | 610970 615963 |
5 | 9 | r | 1 | PF00400 PTHR22847 KOG2096 AT4G00090.1 Transducin/WD40 repeat-like superf... | 0 | |||||||||
| Bradi1g00860 | 1 | 616224 621155 |
4.9 | 11 | r | 1 | PF04227 PTHR10584 AT1G50510.1 indigoidine synthase A family protein LOC... | 0.8 | 0.86 | ||||||||
| Bradi1g00867 | 1 | 621420 622308 |
0.9 | 1 | f | 1 | PF00181,PF03947 PTHR13691 KOG2309 AT4G36130.1 Ribosomal protein L2 famil... | 0 | |||||||||
| Bradi1g00880 | 1 | 623143 623742 |
0.6 | 0 | f | 1 | LOC_Os03g64100.1 expressed protein... | 0 | |||||||||
| Bradi1g00887 | 1 | 625801 634726 |
8.9 | 30 | f | 1 | PF03810,PF08389,PF08767 PTHR11223 KOG2020 K14290 AT5G17020.1 ATCRM1,ATXPO1... | 0.5 | 0.42 | ||||||||
| Bradi1g00900 | 1 | 637592 638629 |
1 | 1 | r | 1 | PF03641 AT5G06300.1 Putative lysine decarboxylase family protein LOC_O... | 0.64 | 0.24 | ||||||||
| Bradi1g00910 | 1 | 641380 642212 |
0.8 | 1 | f | 1 | AT1G65000.1 LOC_Os03g64060.1 expressed protein... | 0.86 | 0.92 | ||||||||
| Bradi1g00920 | 1 | 643678 644861 |
1.2 | 1 | r | 1 | PF03629 AT4G34215.1 Domain of unknown function (DUF303) LOC_Os03g6405... | 0 | |||||||||
| Bradi1g00930 | 1 | 646726 648745 |
2 | 1 | f | 1 | AT4G34215.1 Domain of unknown function (DUF303) LOC_Os03g64030.1 recepto... | 0.92 | 0.95 | ||||||||
| Bradi1g00940 | 1 | 649583 652456 |
2.9 | 9 | f | 1 | AT4G22890.1 PGR5-LIKE A PGR5-LIKE A LOC_Os03g64020.2 expressed protein... | 0.87 | 0.93 | ||||||||
| Bradi1g00950 | 1 | 659999 661553 |
1.6 | 1 | f | 1 | PF03171 PTHR10209 KOG0143 1.14.11.12 K05282 AT4G25420.1 AT2301,ATGA20OX1,GA... | 0.58 | 0.85 | ||||||||
| Bradi1g00960 | 1 | 672678 678601 |
5.9 | 7 | r | 2 | PF00931 KOG4658 AT3G14460.1 LRR and NB-ARC domains-containing disease r... | 0.64 | 0.36 | ||||||||
| Bradi1g00970 | 1 | 682482 683291 |
0.8 | 2 | f | 1 | AT2G02360.1 AtPP2-B10,PP2-B10 phloem protein 2-B10 LOC_Os12g03740.1 OsFBX4... | 0.37 | 0.11 | ||||||||
| Bradi1g00980 | 1 | 683374 684925 |
1.6 | 3 | r | 2 | PF02482 AT5G24490.1 30S ribosomal protein, putative LOC_Os03g63950.1 ... | 0.94 | 0.97 | ||||||||
| Bradi1g00990 | 1 | 685588 691368 |
5.8 | 12 | r | 1 | PF00571 PTHR13780 KOG1764 AT1G09020.1 ATSNF4,SNF4 homolog of yeast sucros... | 0.56 | 0.47 | ||||||||
| Bradi1g01000 | 1 | 694578 696333 |
1.8 | 3 | f | 1 | PF00550 PTHR20863 KOG1748 AT3G05020.1 ACP,ACP1 acyl carrier protein 1 LOC... | 0.71 | 0.91 | ||||||||
| Bradi1g01007 | 1 | 695876 702209 |
6.3 | 11 | r | 1 | PF03731,PF02735,PF03730,PF08785 PTHR12604 KOG2326 K10885 AT1G48050.1 ATKU8... | 0.12 | 0.11 | ||||||||
| Bradi1g01014 | 1 | 703492 705801 |
2.3 | 4 | r | 1 | PF01217 PTHR11043 AT1G15370.1 SNARE-like superfamily protein LOC_Os03g6... | 0.94 | 0.96 | ||||||||
| Bradi1g01021 | 1 | 706038 708663 |
2.6 | 1 | r | 1 | PF01535 PTHR10483 AT5G46580.1 pentatricopeptide (PPR) repeat-containing... | 0.2 | 0.06 | ||||||||
| Bradi1g01030 | 1 | 709517 709750 |
0.2 | 0 | r | 1 | PTHR11821:SF29 AT1G75250.1 ATRL6,RL6,RSM3 RAD-like 6 LOC_Os03g63890.1 M... | 0 | |||||||||
| Bradi1g01040 | 1 | 710464 714401 |
3.9 | 7 | f | 1 | PF07724,PF07728,PF00004,PF10431 PTHR11638 AT1G74310.1 ATHSP101,HOT1,HSP1... | 0 | |||||||||
| Bradi1g01047 | 1 | 716725 719957 |
3.2 | 2 | r | 1 | AT5G42960.1 LOC_Os03g63860.1 DANA2, putative, expressed... | 0.29 | 0.44 | ||||||||
| Bradi1g01060 | 1 | 723127 723493 |
0.4 | 0 | r | 1 | LOC_Os03g63810.1 WRKY80, expressed... | 0 | |||||||||
| Bradi1g01070 | 1 | 731493 733959 |
2.5 | 7 | r | 1 | PTHR13261 KOG3034 AT2G44510.1 CDK inhibitor P21 binding protein LOC_Os03... | 0 | |||||||||
| Bradi1g01080 | 1 | 744088 744829 |
0.7 | 0 | f | 1 | PF06094 PTHR12510 KOG4450 AT3G02910.1 AIG2-like (avirulence induced gene... | 0.93 | 0.94 | ||||||||
| Bradi1g01090 | 1 | 745282 749088 |
3.8 | 6 | r | 1 | PF01412 PTHR23180 KOG0706 K12493 AT5G46750.1 AGD9 ARF-GAP domain 9 LOC_Os0... | 0.98 | 0.99 | ||||||||
| Bradi1g01100 | 1 | 749903 752271 |
2.4 | 6 | r | 1 | PF01138 PTHR11953 KOG1069 K12590 AT3G46210.1 Ribosomal protein S5 domain ... | 0 | |||||||||
| Bradi1g01110 | 1 | 752513 756241 |
3.7 | 5 | f | 1 | PF00076 PTHR10432 KOG0131 AT5G46840.1 RNA-binding (RRM/RBD/RNP motifs) f... | 0.99 | 0.96 | ||||||||
| Bradi1g01120 | 1 | 756392 757112 |
0.7 | 0 | r | 1 | PTHR11207 AT1G24450.1 NFD2 Ribonuclease III family protein LOC_Os03g6374... | 0 | |||||||||
| Bradi1g01130 | 1 | 758757 763396 |
4.6 | 2 | f | 2 | PF00447 PTHR10015 KOG0627 AT1G32330.1 ATHSFA1D,HSFA1D heat shock transcri... | 0.51 | 0.2 | ||||||||
| Bradi1g01140 | 1 | 764088 767289 |
3.2 | 4 | f | 1 | PF00753,PF10996,PF07521,PF11718 PTHR11203 KOG1137 3.1.27.- K14403 AT1G61010... | 0.31 | 0.14 | ||||||||
| Bradi1g01150 | 1 | 767475 768810 |
1.3 | 0 | r | 1 | PF00722,PF06955 AT1G32170.1 XTH30,XTR4 xyloglucan endotransglucosylase/... | 0 | |||||||||
| Bradi1g01160 | 1 | 770537 771094 |
0.6 | 0 | f | 1 | PF07893 LOC_Os05g03490.1 expressed protein... | 0 | |||||||||
| Bradi1g01170 | 1 | 771227 777674 |
6.4 | 7 | r | 3 | PF12174 AT1G32230.3 ATP8,CEO,CEO1,RCD1 WWE protein-protein interaction ... | 0.76 | 0.9 | ||||||||
| Bradi1g01180 | 1 | 799120 801659 |
2.5 | 4 | f | 1 | PF00004,PF07724,PF07728,PF10431 PTHR11638 AT1G74310.1 ATHSP101,HOT1,HSP1... | 0 | |||||||||
| Bradi1g01190 | 1 | 803024 804595 |
1.6 | 0 | f | 1 | PF04185 3.1.4.3 K01114 AT3G03530.1 NPC4 non-specific phospholipase C4 LOC... | 0 |