AtGDB v.4 Loci/Annotations
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| Locus ID |
Gen ome |
Chr | From/To | Len (kb) |
Intron Count |
Str | # Tran |
Locus Description (hover for complete description) |
Gene | Gene Structure Annotation Project | Cov er age  |
Inte grity |
yrGATE Anno Count |
yrGATE Anno Class |
yrGATE Gene Product | Anno Status (click to view) |
Annotate it! |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G01010 | 1 | 3631 5899 |
2.3 | 5 | f | 1 | Symbols: ANAC001, NAC001 NAC domain containing protein 1 chr1:3760-5630 ... | 1 | 0.98 | ||||||||
| AT1G01020 | 1 | 5928 8737 |
2.8 | 9 | r | 2 | Symbols: ARV1 Arv1-like protein chr1:6915-8666 REVERSE LENGTH=246; Type:... | 1 | 0.97 | ||||||||
| AT1G01030 | 1 | 11649 13714 |
2.1 | 1 | r | 1 | Symbols: NGA3 AP2/B3-like transcriptional factor family protein chr1:118... | 1 | 1 | ||||||||
| AT1G01040 | 1 | 23146 31227 |
8.1 | 19 | f | 2 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 dicer-like 1 ... | 1 | 0.96 | ||||||||
| AT1G01046 | 1 | 28500 28706 |
0.2 | 0 | f | 1 | ; Type: mirna; Curator_summary:Encodes a microRNA of unknown function. Micr... | 1 | 0.35 | ||||||||
| AT1G01050 | 1 | 31170 33153 |
2 | 8 | r | 1 | Symbols: AtPPa1, PPa1 pyrophosphorylase 1 chr1:31382-32670 REVERSE LENGT... | 1 | 1 | ||||||||
| AT1G01060 | 1 | 33379 37871 |
4.5 | 9 | r | 5 | Symbols: LHY, LHY1 Homeodomain-like superfamily protein chr1:33992-37061... | 0.98 | 0.96 | ||||||||
| AT1G01070 | 1 | 38752 40944 |
2.2 | 5 | r | 2 | Symbols: nodulin MtN21 /EamA-like transporter family protein chr1:38898... | 1 | 0.98 | ||||||||
| AT1G01073 | 1 | 44677 44787 |
0.1 | 0 | f | 1 | Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... | 0 | |||||||||
| AT1G01080 | 1 | 45296 47019 |
1.7 | 3 | r | 2 | Symbols: RNA-binding (RRM/RBD/RNP motifs) family protein chr1:45503-467... | 0.86 | 0.86 | ||||||||
| AT1G01090 | 1 | 47485 49286 |
1.8 | 2 | r | 1 | Symbols: PDH-E1 ALPHA pyruvate dehydrogenase E1 alpha chr1:47705-49166 R... | 1 | 0.98 | ||||||||
| AT1G01100 | 1 | 50075 51199 |
1.1 | 4 | r | 4 | Symbols: 60S acidic ribosomal protein family chr1:50284-50954 REVERSE L... | 1 | 0.97 | ||||||||
| AT1G01110 | 1 | 52239 54692 |
2.5 | 4 | f | 2 | Symbols: IQD18 IQ-domain 18 chr1:53022-54494 FORWARD LENGTH=365; Type: p... | 0.89 | 0.86 | ||||||||
| AT1G01115 | 1 | 56624 56740 |
0.1 | 0 | f | 1 | Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... | 0 | |||||||||
| AT1G01120 | 1 | 57269 59167 |
1.9 | 0 | r | 1 | Symbols: KCS1 3-ketoacyl-CoA synthase 1 chr1:57392-58978 REVERSE LENGTH=... | 1 | 1 | ||||||||
| AT1G01130 | 1 | 61905 63811 |
1.9 | 2 | r | 1 | Symbols: CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (Int... | 0.68 | 0.2 | ||||||||
| AT1G01140 | 1 | 64166 67625 |
3.5 | 13 | r | 3 | Symbols: CIPK9, SnRK3.12, PKS6 CBL-interacting protein kinase 9 chr1:643... | 1 | 0.98 | ||||||||
| AT1G01150 | 1 | 70115 72138 |
2 | 3 | r | 1 | Symbols: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger do... | 0.5 | 0.39 | ||||||||
| AT1G01160 | 1 | 72339 74096 |
1.8 | 5 | f | 2 | Symbols: GIF2 GRF1-interacting factor 2 chr1:72583-73883 FORWARD LENGTH=... | 1 | 0.88 | ||||||||
| AT1G01170 | 1 | 73931 74737 |
0.8 | 2 | r | 2 | Symbols: Protein of unknown function (DUF1138) chr1:74105-74443 REVERSE... | 1 | 0.97 | ||||||||
| AT1G01180 | 1 | 75583 76758 |
1.2 | 0 | f | 1 | Symbols: S-adenosyl-L-methionine-dependent methyltransferases superfamil... | 1 | 0.35 | ||||||||
| AT1G01183 | 1 | 78932 79032 |
0.1 | 0 | r | 1 | ; Type: mirna; Curator_summary:Encodes a microRNA that targets several HD-Z... | 0 | |||||||||
| AT1G01190 | 1 | 83045 84864 |
1.8 | 1 | r | 1 | Symbols: CYP78A8 cytochrome P450, family 78, subfamily A, polypeptide 8 ... | 0.37 | 0.11 | ||||||||
| AT1G01200 | 1 | 86515 88213 |
1.7 | 1 | r | 1 | Symbols: ATRABA3, ATRAB-A3, RABA3 RAB GTPase homolog A3 chr1:86715-88145... | 1 | 0.97 | ||||||||
| AT1G01210 | 1 | 88898 89745 |
0.8 | 2 | f | 1 | Symbols: DNA-directed RNA polymerase, subunit M, archaeal chr1:88977-89... | 1 | 0.97 | ||||||||
| AT1G01220 | 1 | 91376 95651 |
4.3 | 7 | f | 1 | Symbols: FKGP, AtFKGP L-fucokinase/GDP-L-fucose pyrophosphorylase chr1:9... | 0.77 | 0.76 | ||||||||
| AT1G01225 | 1 | 95987 97407 |
1.4 | 1 | f | 1 | Symbols: NC domain-containing protein-related chr1:96064-97242 FORWARD ... | 1 | 0.97 | ||||||||
| AT1G01230 | 1 | 97456 99240 |
1.8 | 2 | f | 1 | Symbols: ORMDL family protein chr1:97620-99046 FORWARD LENGTH=158; Type... | 1 | 0.99 | ||||||||
| AT1G01240 | 1 | 99894 101834 |
1.9 | 1 | f | 3 | Symbols: unknown protein; INVOLVED IN: N-terminal protein myristoylation... | 1 | 0.99 | ||||||||
| AT1G01250 | 1 | 104491 105330 |
0.8 | 0 | r | 1 | Symbols: Integrase-type DNA-binding superfamily protein chr1:104731-105... | 1 | 0.95 | ||||||||
| AT1G01260 | 1 | 108946 111609 |
2.7 | 1 | f | 3 | Symbols: basic helix-loop-helix (bHLH) DNA-binding superfamily protein ... | 0.99 | 0.78 | ||||||||
| AT1G01270 | 1 | 111890 111961 |
0.1 | 0 | r | 1 | ; Type: pre_trna; Computational_description:tRNA-Gln (anticodon: CTG)... | 1 | 0.32 | ||||||||
| AT1G01280 | 1 | 112263 113947 |
1.7 | 1 | f | 1 | Symbols: CYP703A2, CYP703 cytochrome P450, family 703, subfamily A, polyp... | 1 | 0.93 | ||||||||
| AT1G01290 | 1 | 114286 116108 |
1.8 | 2 | f | 2 | Symbols: CNX3 cofactor of nitrate reductase and xanthine dehydrogenase 3 ... | 1 | 0.95 | ||||||||
| AT1G01300 | 1 | 116943 118764 |
1.8 | 0 | f | 1 | Symbols: Eukaryotic aspartyl protease family protein chr1:117065-118522... | 1 | 0.98 | ||||||||
| AT1G01305 | 1 | 119397 119997 |
0.6 | 0 | f | 1 | Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... | 1 | 0.96 | ||||||||
| AT1G01310 | 1 | 120154 121130 |
1 | 0 | f | 1 | Symbols: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogene... | 1 | 0.97 | ||||||||
| AT1G01320 | 1 | 121067 130577 |
9.5 | 24 | r | 2 | Symbols: Tetratricopeptide repeat (TPR)-like superfamily protein chr1:1... | 0.67 | 0.56 | ||||||||
| AT1G01340 | 1 | 132328 135831 |
3.5 | 8 | r | 2 | Symbols: ATCNGC10, CNGC10, ACBK1 cyclic nucleotide gated channel 10 chr1... | 0.97 | 0.91 | ||||||||
| AT1G01350 | 1 | 136124 138162 |
2 | 3 | f | 1 | Symbols: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein ... | 1 | 0.99 | ||||||||
| AT1G01355 | 1 | 138513 139568 |
1.1 | 4 | f | 1 | Symbols: Putative endonuclease or glycosyl hydrolase chr1:138513-139568... | 0 | |||||||||
| AT1G01360 | 1 | 141971 143183 |
1.2 | 2 | f | 1 | Symbols: RCAR1, PYL9 regulatory component of ABA receptor 1 chr1:142138-... | 1 | 0.99 | ||||||||
| AT1G01370 | 1 | 143564 145684 |
2.1 | 9 | f | 2 | Symbols: HTR12, CENH3 Histone superfamily protein chr1:143773-145400 FOR... | 1 | 0.97 | ||||||||
| AT1G01380 | 1 | 147153 147942 |
0.8 | 2 | f | 1 | Symbols: ETC1 Homeodomain-like superfamily protein chr1:147267-147740 FO... | 0.99 | 0.98 | ||||||||
| AT1G01390 | 1 | 148120 149806 |
1.7 | 0 | r | 1 | Symbols: UDP-Glycosyltransferase superfamily protein chr1:148319-149761... | 1 | 0.96 | ||||||||
| AT1G01400 | 1 | 150689 152210 |
1.5 | 3 | r | 1 | Symbols: unknown protein; Has 21 Blast hits to 21 proteins in 8 species:... | 1 | 0.97 | ||||||||
| AT1G01410 | 1 | 153113 154198 |
1.1 | 0 | f | 1 | Symbols: APUM22, PUM22 pumilio 22 chr1:153113-154198 FORWARD LENGTH=362;... | 0 | |||||||||
| AT1G01420 | 1 | 154492 156011 |
1.5 | 0 | r | 1 | Symbols: UGT72B3 UDP-glucosyl transferase 72B3 chr1:154566-156011 REVERS... | 1 | 0.94 | ||||||||
| AT1G01430 | 1 | 156801 158655 |
1.9 | 2 | r | 1 | Symbols: TBL25 TRICHOME BIREFRINGENCE-LIKE 25 chr1:156953-158536 REVERSE... | 1 | 0.98 | ||||||||
| AT1G01440 | 1 | 159856 162572 |
2.7 | 4 | r | 1 | Symbols: Protein of unknown function (DUF3133) chr1:159935-162219 REVER... | 1 | 0.95 | ||||||||
| AT1G01448 | 1 | 163419 166239 |
2.8 | 4 | f | 3 | ; Type: other_rna; Curator_summary:Potential natural antisense gene, locus ... | 1 | 0.85 | ||||||||
| AT1G01450 | 1 | 164105 165517 |
1.4 | 0 | r | 1 | Symbols: Protein kinase superfamily protein chr1:164105-165517 REVERSE ... | 0.88 | 0.86 | ||||||||
| AT1G01453 | 1 | 166589 167842 |
1.3 | 1 | r | 2 | Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... | 1 | 0.96 | ||||||||
| AT1G01460 | 1 | 168723 171165 |
2.4 | 9 | f | 1 | Symbols: ATPIPK11, PIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core... | 1 | 0.95 | ||||||||
| AT1G01470 | 1 | 172146 172948 |
0.8 | 1 | r | 1 | Symbols: LEA14, LSR3 Late embryogenesis abundant protein chr1:172295-172... | 0.99 | 0.98 | ||||||||
| AT1G01471 | 1 | 173251 173466 |
0.2 | 0 | f | 1 | Symbols: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 ... | 0 | |||||||||
| AT1G01480 | 1 | 175782 178400 |
2.6 | 3 | f | 2 | Symbols: ACS2, AT-ACC2 1-amino-cyclopropane-1-carboxylate synthase 2 chr... | 1 | 0.99 | ||||||||
| AT1G01490 | 1 | 180059 182358 |
2.3 | 3 | r | 2 | Symbols: Heavy metal transport/detoxification superfamily protein chr1... | 1 | 0.99 | ||||||||
| AT1G01500 | 1 | 185133 186923 |
1.8 | 1 | f | 1 | Symbols: Erythronate-4-phosphate dehydrogenase family protein chr1:1852... | 1 | 0.98 | ||||||||
| AT1G01510 | 1 | 187211 190056 |
2.8 | 6 | f | 1 | Symbols: AN NAD(P)-binding Rossmann-fold superfamily protein chr1:187235... | 1 | 0.96 | ||||||||
| AT1G01520 | 1 | 190596 192139 |
1.5 | 7 | f | 1 | Symbols: Homeodomain-like superfamily protein chr1:190596-192139 FORWAR... | 1 | 0.9 | ||||||||
| AT1G01530 | 1 | 192640 193670 |
1 | 1 | r | 1 | Symbols: AGL28 AGAMOUS-like 28 chr1:192640-193662 REVERSE LENGTH=248; Ty... | 1 | 0.9 | ||||||||
| AT1G01540 | 1 | 195780 198684 |
2.9 | 6 | f | 2 | Symbols: Protein kinase superfamily protein chr1:195980-197973 FORWARD ... | 1 | 1 | ||||||||
| AT1G01550 | 1 | 199639 201775 |
2.1 | 2 | f | 2 | Symbols: BPS1 Protein of unknown function (DUF793) chr1:200526-201575 FO... | 1 | 1 | ||||||||
| AT1G01560 | 1 | 202136 204335 |
2.2 | 5 | f | 2 | Symbols: ATMPK11, MPK11 MAP kinase 11 chr1:202345-203662 FORWARD LENGTH=... | 1 | 0.85 | ||||||||
| AT1G01570 | 1 | 205176 207435 |
2.3 | 2 | f | 1 | Symbols: Protein of unknown function (DUF604) chr1:205176-207435 FORWAR... | 0.3 | 0.39 | ||||||||
| AT1G01580 | 1 | 209395 213041 |
3.6 | 7 | f | 1 | Symbols: FRO2, FRD1, ATFRO2 ferric reduction oxidase 2 chr1:209395-21281... | 1 | 0.95 | ||||||||
| AT1G01590 | 1 | 214229 217304 |
3.1 | 7 | f | 1 | Symbols: FRO1, ATFRO1 ferric reduction oxidase 1 chr1:214229-217304 FORW... | 0 | |||||||||
| AT1G01600 | 1 | 218994 221286 |
2.3 | 1 | f | 1 | Symbols: CYP86A4 cytochrome P450, family 86, subfamily A, polypeptide 4 ... | 1 | 1 | ||||||||
| AT1G01610 | 1 | 221691 224340 |
2.6 | 3 | r | 1 | Symbols: ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 chr1:2219... | 1 | 0.97 | ||||||||
| AT1G01620 | 1 | 225665 227302 |
1.6 | 4 | r | 2 | Symbols: PIP1C, TMP-B, PIP1;3 plasma membrane intrinsic protein 1C chr1:... | 1 | 0.92 | ||||||||
| AT1G01630 | 1 | 229013 230917 |
1.9 | 4 | f | 1 | Symbols: Sec14p-like phosphatidylinositol transfer family protein chr1:... | 1 | 1 | ||||||||
| AT1G01640 | 1 | 230994 232508 |
1.5 | 2 | r | 2 | Symbols: BTB/POZ domain-containing protein chr1:231164-231915 REVERSE L... | 1 | 0.98 | ||||||||
| AT1G01650 | 1 | 232841 237817 |
5 | 13 | r | 2 | Symbols: SPPL4, ATSPPL4 SIGNAL PEPTIDE PEPTIDASE-LIKE 4 chr1:233188-2376... | 1 | 1 | ||||||||
| AT1G01660 | 1 | 240057 242608 |
2.6 | 9 | r | 1 | Symbols: RING/U-box superfamily protein chr1:240057-242608 REVERSE LENG... | 0 | |||||||||
| AT1G01670 | 1 | 242843 245988 |
3.1 | 7 | r | 1 | Symbols: RING/U-box superfamily protein chr1:242943-245163 REVERSE LENG... | 1 | 1 | ||||||||
| AT1G01680 | 1 | 246411 248367 |
2 | 6 | r | 1 | Symbols: ATPUB54, PUB54 plant U-box 54 chr1:246411-248329 REVERSE LENGTH... | 0.85 | 0.87 | ||||||||
| AT1G01690 | 1 | 249141 252462 |
3.3 | 13 | f | 1 | Symbols: ATPRD3, PRD3 putative recombination initiation defects 3 chr1:2... | 1 | 0.98 | ||||||||
| AT1G01695 | 1 | 252947 254495 |
1.5 | 3 | f | 1 | Symbols: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-r... | 0 | |||||||||
| AT1G01700 | 1 | 259495 261474 |
2 | 6 | r | 1 | Symbols: ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 chr1... | 0 | |||||||||
| AT1G01710 | 1 | 262828 267771 |
4.9 | 18 | f | 1 | Symbols: Acyl-CoA thioesterase family protein chr1:262950-266029 FORWAR... | 1 | 0.98 | ||||||||
| AT1G01720 | 1 | 268330 269819 |
1.5 | 2 | f | 1 | Symbols: ATAF1, ANAC002 NAC (No Apical Meristem) domain transcriptional r... | 1 | 0.99 | ||||||||
| AT1G01725 | 1 | 269792 270775 |
1 | 1 | r | 1 | Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... | 1 | 0.96 | ||||||||
| AT1G01730 | 1 | 270956 272061 |
1.1 | 2 | f | 1 | Symbols: unknown protein; FUNCTIONS IN: molecular_function unknown; INVO... | 1 | 0.96 | ||||||||
| AT1G01740 | 1 | 272111 274569 |
2.5 | 9 | r | 2 | Symbols: Protein kinase protein with tetratricopeptide repeat domain ch... | 0.05 | 0.06 | ||||||||
| AT1G01750 | 1 | 275366 276310 |
0.9 | 2 | f | 1 | Symbols: ADF11 actin depolymerizing factor 11 chr1:275528-276126 FORWARD... | 1 | 0.99 | ||||||||
| AT1G01760 | 1 | 276266 278448 |
2.2 | 9 | r | 1 | Symbols: adenosine deaminases;RNA binding;RNA binding;adenosine deaminas... | 1 | 0.93 | ||||||||
| AT1G01770 | 1 | 278615 282891 |
4.3 | 15 | f | 1 | Symbols: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown... | 1 | 0.99 | ||||||||
| AT1G01780 | 1 | 282761 284245 |
1.5 | 4 | f | 1 | Symbols: GATA type zinc finger transcription factor family protein chr1... | 1 | 0.99 | ||||||||
| AT1G01790 | 1 | 284610 291094 |
6.5 | 20 | f | 1 | Symbols: KEA1, ATKEA1 K+ efflux antiporter 1 chr1:284781-290869 FORWARD ... | 0.67 | 0.84 | ||||||||
| AT1G01800 | 1 | 293342 295040 |
1.7 | 4 | f | 2 | Symbols: NAD(P)-binding Rossmann-fold superfamily protein chr1:293396-2... | 1 | 0.9 | ||||||||
| AT1G01810 | 1 | 295221 295859 |
0.6 | 0 | f | 1 | Symbols: unknown protein; Has 12 Blast hits to 12 proteins in 5 species:... | 1 | 0.96 | ||||||||
| AT1G01820 | 1 | 296001 298120 |
2.1 | 7 | r | 1 | Symbols: PEX11C peroxin 11c chr1:296213-297723 REVERSE LENGTH=236; Type:... | 1 | 0.98 | ||||||||
| AT1G01830 | 1 | 298535 302315 |
3.8 | 4 | r | 3 | Symbols: ARM repeat superfamily protein chr1:298717-300441 REVERSE LENG... | 1 | 1 | ||||||||
| AT1G01840 | 1 | 303537 304358 |
0.8 | 0 | f | 1 | Symbols: unknown protein; Has 23 Blast hits to 23 proteins in 9 species:... | 1 | 0.98 | ||||||||
| AT1G01860 | 1 | 304133 306287 |
2.2 | 8 | r | 1 | Symbols: PFC1 Ribosomal RNA adenine dimethylase family protein chr1:3044... | 1 | 0.95 | ||||||||
| AT1G01870 | 1 | 306384 306456 |
0.1 | 0 | f | 1 | ; Type: pre_trna; Computational_description:tRNA-Val (anticodon: TAC)... | 0 | |||||||||
| AT1G01880 | 1 | 306480 309109 |
2.6 | 6 | r | 2 | Symbols: 5-3 exonuclease family protein chr1:306558-308991 REVERSE LENG... | 0.11 | 0.09 | ||||||||
| AT1G01890 | 1 | 309275 309347 |
0.1 | 0 | r | 1 | ; Type: pre_trna; Computational_description:tRNA-Lys (anticodon: CTT)... | 0 | |||||||||
| AT1G01900 | 1 | 310316 313130 |
2.8 | 1 | f | 1 | Symbols: ATSBT1.1, SBTI1.1 subtilase family protein chr1:310332-313011 F... | 1 | 0.95 |