Alignments to Genome
SiGDB displays high quality spliced alignments for EST
, related species protein
, and Probe
. The current database version is SiGDB187
. For more information see Data & Methods
Sequence analysis tools accessed from the Genome Context View
menu use the current genomic region as input. Or, to access the same tools without a genomic context, use SiGDB left menubar Tools links.
More about tools...
Help annotate the Setaria italica
genome using our yrGATE gene structure annotation tool (see Overview
), aided by GAEVAL tables
that flag problematic gene models.
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Custom Track Display
Distributed Annotation Service (DAS) (see Overview
) is available for displaying remotely served genome alignments at SiGDB, as well as for displaying selected SiGDB tracks on a different genome browser (e.g. Ensembl, GBrowse). How to use DAS...
Additional custom track display features are under development.
Annotated Protein Alignments
Genome browser video demo:
For help pages and tutorials focusing on genome browser features and gene annotation, see side bar.