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Data & Methods
BLAST
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Database
Overview
Human
Drosophila
Yeast
small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Vitis vinifera (Vv)
4.5 Related to spliceosome
CIWOG
Vv
Pp
Zm
Os
Sb
Gm
Mt
Lj
At
Pt
17
GSVIVP00017899001
GSVIVP00035090001
jgi|Phypa1_1|21272|gw1.11.54.1
GRMZM2G115755
GRMZM2G139038
GRMZM2G179097
LOC_Os02g39010
LOC_Os04g41100
jgi|Sorbi1|149065|estExt_fgenesh1_kg.C_chr_60116
jgi|Sorbi1|4756857|estExt_Genewise1.C_chr_46816
Glyma05g27820
Glyma08g10810
Glyma11g37270
Glyma18g01230
IMGA|CT967303_24.2
AT1G67580
gw1.VIII.2040.1_420612
estExt_fgenesh4_pg.C_LG_X0468_821837
28
GSVIVP00019345001
GSVIVP00036145001
jgi|Phypa1_1|169406|estExt_fgenesh1_pg.C_2070055
jgi|Phypa1_1|198566|estExt_gwp_gw1.C_3320014
AC233901.1_FGP001
GRMZM2G071589
GRMZM2G076597
LOC_Os03g05830
LOC_Os10g30370
jgi|Sorbi1|4998860|estExt_fgenesh1_pg.C_chr_14800
jgi|Sorbi1|5048823|Sb01g021020
Glyma05g32080
Glyma06g15370
Glyma08g15370
Glyma10g42890
Glyma20g24130
IMGA|AC137522_14.2
IMGA|CU041253_29.2
LjSGA_015054.2
AT2G16940
AT5G09880
gw1.VII.7.1_215702
grail3.0045020701_648812
estExt_Genewise1_v1.C_LG_V4376_716366
34
GSVIVP00020994001
jgi|Phypa1_1|31719|gw1.36.181.1
GRMZM2G084540
GRMZM2G126120
LOC_Os03g25970
jgi|Sorbi1|4777097|e_gw1.1.15449.1
Glyma09g37070
Glyma13g05520
Glyma18g49600
Glyma19g02840
IMGA|AC122724_34.2
IMGA|AC148485_39.2
LjSGA_002278.2
chr1.CM0141.280.nc
AT5G15270
gw1.IV.88.1_194999
fgenesh4_pg.C_LG_XVII000411_778532
71
GSVIVP00015806001
jgi|Phypa1_1|161416|estExt_fgenesh1_pg.C_320174
jgi|Phypa1_1|56617|fgenesh1_pm.scaffold_40000018
GRMZM2G151614
GRMZM2G173777
LOC_Os02g07070
jgi|Sorbi1|4873923|estExt_Genewise1Plus.C_chr_22424
jgi|Sorbi1|5053632|Sb03g033240
Glyma08g35510
Glyma16g18030
LjSGA_014745.1
LjSGA_021297.1
AT3G54230
gw1.44.326.1_289113
fgenesh4_pm.C_LG_IV000284_800597
76
GSVIVP00003820001
jgi|Phypa1_1|154562|e_gw1.430.3.1
AC212390.3_FGP005
GRMZM2G000749
GRMZM2G118917
LOC_Os03g06190
LOC_Os10g30100
jgi|Sorbi1|4869475|estExt_Genewise1Plus.C_chr_14741
jgi|Sorbi1|5050166|Sb01g046585
Glyma17g24130
Glyma19g29260
IMGA|AC148965_27.2
IMGA|AC148965_33.2
chr1.LjT38H23.70.nd
AT1G54440
AT5G35910
gw1.XIII.2130.1_241881
gw1.XIX.1151.1_248751
79
GSVIVP00015280001
GSVIVP00019432001
jgi|Phypa1_1|171035|estExt_fgenesh1_pg.C_2710053
jgi|Phypa1_1|233549|estExt_fgenesh2_pg.C_890063
GRMZM2G113139
GRMZM2G151387
LOC_Os03g26630
jgi|Sorbi1|4997991|estExt_fgenesh1_pg.C_chr_13449
Glyma11g36120
Glyma18g02310
IMGA|AC141115_31.2
IMGA|AC202494_17.1
IMGA|CT971488_1.2
LjSGA_079569.1
AT4G39680
eugene3.00050196_558581
estExt_Genewise1_v1.C_LG_VII1973_718854
99
GSVIVP00024530001
jgi|Phypa1_1|64922|fgenesh1_pg.scaffold_4000037
GRMZM2G018697
LOC_Os01g62040
LOC_Os07g08170
jgi|Sorbi1|4753872|estExt_Genewise1.C_chr_39736
jgi|Sorbi1|4881914|estExt_Genewise1Plus.C_chr_40472
Glyma07g02170
Glyma08g21830
IMGA|AC138464_44.2
IMGA|AC174343_6.2
chr1.CM0195.50.nd
AT5G22330
gw1.66.399.1_293726
eugene3.00090095_556835
116
GSVIVP00017791001
jgi|Phypa1_1|159747|estExt_fgenesh1_pg.C_150112
jgi|Phypa1_1|223462|estExt_Genewise1.C_2590023
jgi|Phypa1_1|224024|estExt_Genewise1.C_2760003
GRMZM2G038032
GRMZM2G040477
LOC_Os01g49290
jgi|Sorbi1|4768872|estExt_Genewise1.C_chr_97531
jgi|Sorbi1|4879632|estExt_Genewise1Plus.C_chr_38217
Glyma05g34070
Glyma08g05610
IMGA|AC150743_39.2
chr4.CM0042.2090.nc
AT1G18080
AT1G48630
AT3G18130
eugene3.00150364_574969
estExt_fgenesh4_pm.C_LG_XII0164_834267
147
GSVIVP00016018001
jgi|Phypa1_1|189716|estExt_gwp_gw1.C_1360127
jgi|Phypa1_1|205972|estExt_Genewise1.C_310051
GRMZM2G037683
GRMZM2G139363
LOC_Os01g21940
jgi|Sorbi1|5001869|estExt_fgenesh1_pg.C_chr_31420
Glyma05g30430
Glyma08g13560
IMGA|AC142394_45.2
IMGA|AC147435_58.2
LjSGA_052045.1
AT1G73720
estExt_fgenesh4_pg.C_LG_XI1348_823135
163
GSVIVP00008843001
jgi|Phypa1_1|111812|e_gw1.2.614.1
GRMZM2G384327
LOC_Os09g10930
jgi|Sorbi1|4794909|e_gw1.2.20313.1
Glyma08g16200
Glyma15g42690
chr3.LjT46L11.80.nc
AT3G52120
gw1.I.1893.1_173293
estExt_fgenesh4_pg.C_LG_IX0951_821392
168
GSVIVP00029145001
jgi|Phypa1_1|170056|estExt_fgenesh1_pg.C_2290024
GRMZM2G116750
GRMZM2G136085
GRMZM2G417859
LOC_Os06g30710
jgi|Sorbi1|5000809|estExt_fgenesh1_pg.C_chr_23644
Glyma02g47660
Glyma14g01000
IMGA|CR955006_19.2
AT3G07790
eugene3.00002007_552692
fgenesh4_pg.C_LG_XIV001039_775129
172
GSVIVP00036713001
jgi|Phypa1_1|164611|estExt_fgenesh1_pg.C_730012
GRMZM2G404377
LOC_Os11g05394
LOC_Os12g15420
jgi|Sorbi1|143426|estExt_fgenesh1_pm.C_chr_30847
Glyma08g41440
Glyma13g24660
Glyma18g14770
IMGA|AC186676_9.2
LjT48C01.160.nd
LjT48C01.170.nd
AT1G80930
eugene3.00161151_577016
180
GSVIVP00010591001
jgi|Phypa1_1|170668|estExt_fgenesh1_pg.C_2550039
jgi|Phypa1_1|61580|fgenesh1_pm.scaffold_402000007
AC194970.5_FGP009
LOC_Os06g08770
jgi|Sorbi1|5051906|Sb02g037530
Glyma08g45090
Glyma18g07830
IMGA|CT009558_1.2
LjSGA_071984.1
chr6.LjT30N23.70.nd
AT3G49830
AT5G67630
gw1.XVI.3066.1_257127
gw1.28.905.1_282331
204
GSVIVP00005291001
GSVIVP00011001001
jgi|Phypa1_1|108061|estExt_fgenesh1_pm.C_2200004
jgi|Phypa1_1|196206|estExt_gwp_gw1.C_2580008
GRMZM2G171232
LOC_Os03g17170
jgi|Sorbi1|5049686|Sb01g039130
Glyma13g32150
Glyma15g07150
LjSGA_085754.1
AT1G61620
eugene3.00110341_568327
fgenesh4_pm.C_LG_IV000045_800358
estExt_fgenesh4_pg.C_24050001_829094
207
GSVIVP00013882001
jgi|Phypa1_1|140072|e_gw1.162.15.1
jgi|Phypa1_1|197363|estExt_gwp_gw1.C_2920010
GRMZM2G114584
LOC_Os12g42140
jgi|Sorbi1|5008935|estExt_fgenesh1_pg.C_chr_81748
Glyma02g08060
Glyma16g27070
IMGA|CU151874_5.1
AT1G17070
AT2G42330
eugene3.00190491_574017
fgenesh4_pm.C_LG_XIII000323_807023
210
GSVIVP00031419001
jgi|Phypa1_1|159630|estExt_fgenesh1_pg.C_140117
AC217271.3_FGP002
LOC_Os02g17870
jgi|Sorbi1|4758952|estExt_Genewise1.C_chr_50594
Glyma05g28420
Glyma08g11430
IMGA|AC146585_7.2
LjSGA_009527.1
LjSGA_077056.1
AT4G08580
AT5G17900
fgenesh4_pm.C_LG_XIX000122_809557
estExt_fgenesh4_pm.C_LG_XIII0270_834576
214
GSVIVP00006751001
GSVIVP00037112001
GRMZM2G104047
GRMZM2G116592
LOC_Os01g46710
jgi|Sorbi1|5053445|Sb03g029860
Glyma04g41520
Glyma06g13300
IMGA|CR974443_32.2
chr1.CM0496.70.nd
AT5G53440
eugene3.00150157_574762
grail3.0031015701_661509
217
GSVIVP00017597001
jgi|Phypa1_1|171742|estExt_fgenesh1_pg.C_3090029
GRMZM2G131482
LOC_Os06g29400
jgi|Sorbi1|5061717|Sb10g014430
Glyma05g07740
Glyma17g13270
IMGA|AC137819_27.2
LjSGA_018392.1
AT5G23080
eugene3.00120492_569839
222
GSVIVP00003533001
GRMZM2G026614
LOC_Os07g06450
jgi|Sorbi1|5050564|Sb02g003310
Glyma03g36130
Glyma19g38790
IMGA|AC202362_16.1
chr1.CM0361.390.nc
chr5.CM0571.170.nd
AT3G52380
gw1.VI.797.1_416424
eugene3.00160616_576481
223
GSVIVP00021245001
jgi|Phypa1_1|207501|estExt_Genewise1.C_390200
jgi|Phypa1_1|64282|fgenesh1_pg.scaffold_2000159
GRMZM2G477694
LOC_Os10g34380
jgi|Sorbi1|5048728|Sb01g018930
Glyma11g10910
Glyma11g10980
Glyma12g03180
AT3G19840
eugene3.00080783_564188
233
GSVIVP00010394001
jgi|Phypa1_1|149326|e_gw1.294.23.1
GRMZM2G086236
LOC_Os01g40610
jgi|Sorbi1|4879012|estExt_Genewise1Plus.C_chr_37003
Glyma13g33280
Glyma15g39810
IMGA|AC157535_30.2
LjSGA_081380.1
AT1G17130
estExt_Genewise1_v1.C_LG_XI3018_728081
234
GSVIVP00033559001
jgi|Phypa1_1|60909|fgenesh1_pm.scaffold_299000002
GRMZM2G414496
LOC_Os07g08729
jgi|Sorbi1|4873020|estExt_Genewise1Plus.C_chr_20058
jgi|Sorbi1|5032669|Sb02g004740
Glyma20g39280
IMGA|AC149471_38.2
chr5.LjT42F22.120.nc
AT1G16970
gw1.XI.3477.1_235497
240
GSVIVP00034114001
jgi|Phypa1_1|61696|fgenesh1_pm.scaffold_427000004
GRMZM2G120784
LOC_Os02g33860
jgi|Sorbi1|144443|estExt_fgenesh1_pm.C_chr_40509
Glyma05g32110
Glyma08g15400
IMGA|AC148821_34.2
IMGA|AC203549_20.1
chr4.CM0042.1800.nd
AT5G64730
estExt_fgenesh4_pg.C_LG_I2540_815667
242
GSVIVP00038614001
jgi|Phypa1_1|25801|gw1.8.103.1
GRMZM2G176499
LOC_Os03g04400
jgi|Sorbi1|4872539|estExt_Genewise1Plus.C_chr_111861
Glyma10g42950
Glyma20g24050
chr5.LjT39E05.240.nd
AT5G23590
eugene3.00090311_557051
259
GSVIVP00025875001
jgi|Phypa1_1|20465|gw1.17.31.1
GRMZM2G048819
LOC_Os07g32890
jgi|Sorbi1|5051739|Sb02g034580
Glyma06g46220
Glyma12g10530
LjT10F13.180.nd
AT2G32415
gw1.II.581.1_409246
fgenesh4_pg.C_LG_II002083_755903
261
GSVIVP00016370001
jgi|Phypa1_1|197602|estExt_gwp_gw1.C_3000034
GRMZM2G015592
LOC_Os11g04950
LOC_Os12g04940
jgi|Sorbi1|4765210|estExt_Genewise1.C_chr_80204
jgi|Sorbi1|5005279|estExt_fgenesh1_pg.C_chr_50304
Glyma09g08650
Glyma15g20260
chr6.CM0013.200.nd
AT2G26460
fgenesh4_pg.C_LG_XVIII000028_778660
270
GSVIVP00000554001
jgi|Phypa1_1|196982|estExt_gwp_gw1.C_2800025
GRMZM2G072156
LOC_Os03g58590
jgi|Sorbi1|123104|fgenesh1_pm.C_chr_1000158
Glyma03g34590
Glyma13g21200
Glyma19g37280
IMGA|AC174301_41.2
LjSGA_016052.1
AT1G03910
eugene3.00280272_589536
284
GSVIVP00007486001
jgi|Phypa1_1|172561|estExt_fgenesh1_pg.C_3600017
LOC_Os03g15480
jgi|Sorbi1|147487|estExt_fgenesh1_kg.C_chr_10473
Glyma12g31530
Glyma13g38860
IMGA|AC124957_22.2
IMGA|AC133862_1.2
AT5G22080
estExt_fgenesh4_pg.C_LG_IX1388_821615
estExt_fgenesh4_pm.C_LG_I0582_829583
297
GSVIVP00038161001
GRMZM2G149138
LOC_Os06g30020
jgi|Sorbi1|5055275|Sb04g023010
Glyma19g05440
LjSGA_040056.1
AT1G67210
AT5G38600
gw1.123.141.1_266119
fgenesh4_pg.C_LG_IV000890_759262
302
GSVIVP00015807001
jgi|Phypa1_1|57686|fgenesh1_pm.scaffold_74000006
GRMZM2G102964
LOC_Os08g08080
jgi|Sorbi1|5061237|Sb10g002430
Glyma07g07730
chr5.CM0095.210.nd
AT1G31870
gw1.118.149.1_264661
356
GSVIVP00002458001
Glyma05g37050
Glyma08g02510
chr4.CM0025.150.nd
AT1G64330
AT5G41790
eugene3.00031098_554465
grail3.0008039601_640386
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