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Arabidopsis thaliana
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Human
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Sorghum bicolor (Sb)
1.5 U4/U6 snRNP specific proteins
CIWOG
Sb
Pp
Zm
Os
Gm
Mt
Lj
At
Vv
Pt
70
jgi|Sorbi1|147571|estExt_fgenesh1_kg.C_chr_10559
jgi|Sorbi1|4871656|estExt_Genewise1Plus.C_chr_110444
jgi|Phypa1_1|178018|estExt_gwp_gw1.C_280040
jgi|Phypa1_1|183322|estExt_gwp_gw1.C_650023
jgi|Phypa1_1|206666|estExt_Genewise1.C_340284
jgi|Phypa1_1|210714|estExt_Genewise1.C_650018
AC233859.1_FGP003
GRMZM2G140799
LOC_Os03g13800
Glyma02g39510
Glyma13g23690
Glyma14g37600
Glyma17g12430
IMGA|AC202469_4.1
IMGA|AC202570_10.1
chr1.LjT39K18.150.nc
AT4G12600
AT4G22380
AT5G20160
GSVIVP00016877001
GSVIVP00018373001
estExt_fgenesh4_pg.C_410046_826867
113
jgi|Sorbi1|4761827|estExt_Genewise1.C_chr_66828
jgi|Phypa1_1|59230|fgenesh1_pm.scaffold_154000005
GRMZM2G003307
LOC_Os04g46890
LOC_Os07g04850
Glyma16g06810
Glyma19g24310
IMGA|AC150800_1.2
LjSGA_058502.1
AT1G60170
GSVIVP00028845001
gw1.XIV.1845.1_245102
eugene3.00021631_552316
173
jgi|Sorbi1|4978227|fgenesh1_pg.C_chr_4001060
jgi|Phypa1_1|170971|estExt_fgenesh1_pg.C_2690063
GRMZM2G375172
LOC_Os09g07500
Glyma01g43990
Glyma11g01460
Glyma20g38600
IMGA|CT571261_24.2
chr5.CM0260.430.nc
AT1G28060
GSVIVP00029506001
gw1.X.2419.1_227722
fgenesh4_pg.C_LG_VIII000391_765377
292
jgi|Sorbi1|4773303|e_gw1.1.15418.1
jgi|Phypa1_1|119600|e_gw1.29.46.1
GRMZM2G101689
LOC_Os03g23909
Glyma02g34620
Glyma10g00300
IMGA|CR936327_16.2
chr5.CM0278.220.nc
AT2G41500
GSVIVP00025331001
fgenesh4_pm.C_LG_VI000143_801796
294
jgi|Sorbi1|4740740|estExt_Genewise1.C_chr_10771
jgi|Phypa1_1|170120|estExt_fgenesh1_pg.C_2320043
GRMZM2G057329
LOC_Os03g59700
Glyma09g11960
IMGA|AC149307_6.2
IMGA|AC174326_23.2
chr3.CM0690.290.nc
AT2G38730
GSVIVP00030885001
estExt_fgenesh4_pg.C_LG_III1703_817630
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