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Human
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Oryza sativa (Os)
1.6 Tri-snRNP specific proteins (U4/U6.U5)
CIWOG
Os
Pp
Zm
Sb
Gm
Mt
Lj
At
Vv
Pt
141
LOC_Os09g24250
jgi|Phypa1_1|21816|gw1.7.83.1
GRMZM2G091151
jgi|Sorbi1|4898432|estExt_Genewise1Plus.C_chr_107712
Glyma10g08500
Glyma13g22190
IMGA|AC151739_7.2
IMGA|AC202594_7.1
chr2.CM0249.1090.nc
AT4G22285
AT4G22350
AT4G22410
GSVIVP00010886001
gw1.XVI.748.1_254809
eugene3.00060108_560149
159
LOC_Os02g30730
jgi|Phypa1_1|233757|estExt_fgenesh2_pg.C_990065
GRMZM2G109284
jgi|Sorbi1|4876566|estExt_Genewise1Plus.C_chr_210600
Glyma07g34600
Glyma08g24660
Glyma15g29960
LjSGA_024791.1
LjSGA_035379.1
AT5G16780
GSVIVP00007133001
gw1.III.133.1_413030
grail3.0008027801_640254
241
LOC_Os02g26349
GRMZM2G097593
jgi|Sorbi1|5000841|estExt_fgenesh1_pg.C_chr_23696
Glyma13g00900
Glyma17g06990
IMGA|AC159873_3.2
LjSGA_146737.1
AT5G57370
GSVIVP00031353001
eugene3.00180809_578585
288
LOC_Os03g61640
jgi|Phypa1_1|193667|estExt_gwp_gw1.C_2010100
GRMZM2G051458
jgi|Sorbi1|4750874|estExt_Genewise1.C_chr_30714
Glyma03g39120
Glyma19g41680
chr1.CM0206.120.nd
AT3G05760
GSVIVP00022628001
estExt_Genewise1_v1.C_LG_XIII0652_729449
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