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Arabidopsis thaliana
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Human
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Medicago truncatula (Mt)
1.2 U1 snRNP specific proteins
CIWOG
Mt
Pp
Zm
Os
Sb
Gm
Lj
At
Vv
Pt
37
IMGA|AC186678_23.2
jgi|Phypa1_1|131290|e_gw1.88.197.1
jgi|Phypa1_1|153817|e_gw1.402.25.1
GRMZM2G028096
GRMZM2G069916
GRMZM2G118014
LOC_Os02g39300
LOC_Os03g62640
jgi|Sorbi1|147050|estExt_fgenesh1_kg.C_chr_10023
jgi|Sorbi1|5004322|estExt_fgenesh1_pg.C_chr_42043
Glyma09g38430
Glyma18g47910
LjT30N18.130.nd
AT3G03340
AT5G17440
GSVIVP00025042001
gw1.XIX.1529.1_249129
estExt_Genewise1_v1.C_870092_742740
75
IMGA|AC147517_33.2
IMGA|AC148607_56.2
jgi|Phypa1_1|119915|e_gw1.30.35.1
jgi|Phypa1_1|140219|e_gw1.164.9.1
jgi|Phypa1_1|210141|estExt_Genewise1.C_590198
GRMZM2G178294
LOC_Os03g11200
jgi|Sorbi1|4871941|estExt_Genewise1Plus.C_chr_110848
Glyma03g32410
Glyma19g35140
LjSGA_023088.1
LjSGA_083272.1
AT1G04080
GSVIVP00028510001
estExt_Genewise1_v1.C_LG_XIV0085_730568
estExt_fgenesh4_pg.C_LG_II2553_816978
143
IMGA|AC148484_33.2
jgi|Phypa1_1|122893|e_gw1.42.134.1
jgi|Phypa1_1|151189|e_gw1.332.23.1
GRMZM2G113592
LOC_Os10g02630
jgi|Sorbi1|4744830|estExt_Genewise1.C_chr_110080
Glyma01g38120
Glyma11g07200
chr4.CM0165.550.nd
AT3G50670
GSVIVP00024956001
gw1.VII.3463.1_219158
351
IMGA|AC144608_48.2
GRMZM2G308713
LOC_Os08g29124
jgi|Sorbi1|5043597|Sb07g019230
Glyma08g12860
LjSGA_039796.1
AT5G46400
GSVIVP00003390001
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