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Arabidopsis thaliana
Brassica napus
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Human
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Medicago truncatula (Mt)
1.1 Sm core proteins
CIWOG
Mt
Pp
Zm
Os
Sb
Gm
Lj
At
Vv
Pt
40
IMGA|AC153350_26.2
jgi|Phypa1_1|123802|e_gw1.46.90.1
jgi|Phypa1_1|149032|e_gw1.288.28.1
jgi|Phypa1_1|89290|fgenesh1_pg.scaffold_181000018
GRMZM2G076399
GRMZM2G166985
GRMZM2G171372
LOC_Os05g24970
jgi|Sorbi1|149087|estExt_fgenesh1_kg.C_chr_60138
Glyma20g34630
chr4.CM0042.1540.nc
AT2G47640
AT3G62840
GSVIVP00028009001
estExt_Genewise1_v1.C_LG_II0233_709823
estExt_fgenesh4_kg.C_LG_XIV0024_814376
83
IMGA|AC146865_2.2
jgi|Phypa1_1|157208|e_gw1.726.1.1
jgi|Phypa1_1|179711|estExt_gwp_gw1.C_370112
jgi|Phypa1_1|188201|estExt_gwp_gw1.C_1160015
GRMZM2G027571
GRMZM2G416061
LOC_Os02g37430
LOC_Os04g39444
jgi|Sorbi1|4761158|estExt_Genewise1.C_chr_65695
jgi|Sorbi1|4883443|estExt_Genewise1Plus.C_chr_46620
Glyma02g10640
Glyma03g30880
Glyma18g52210
Glyma19g33700
AT3G07590
AT4G02840
GSVIVP00033465001
estExt_Genewise1_v1.C_LG_V0812_714948
estExt_fgenesh4_pm.C_LG_II0256_830114
90
IMGA|AC141115_6.2
IMGA|AC202494_26.1
jgi|Phypa1_1|121610|e_gw1.36.199.1
GRMZM2G038606
GRMZM2G095114
LOC_Os01g15310
jgi|Sorbi1|4751585|estExt_Genewise1.C_chr_32091
Glyma02g17430
Glyma03g37170
Glyma10g02380
Glyma19g39780
LjSGA_020126.1
AT5G27720
GSVIVP00022717001
eugene3.00021743_552428
96
IMGA|AC196855_4.1
IMGA|CU179877_9.1
jgi|Phypa1_1|106560|estExt_fgenesh1_pm.C_840022
jgi|Phypa1_1|110323|estExt_fgenesh1_kg.C_2090005
jgi|Phypa1_1|118904|e_gw1.26.139.1
GRMZM2G014091
GRMZM2G386608
LOC_Os02g03440
jgi|Sorbi1|142872|estExt_fgenesh1_pm.C_chr_30075
Glyma04g38600
Glyma06g16410
Glyma13g01320
Glyma17g07460
AT2G18740
AT4G30330
GSVIVP00017697001
estExt_Genewise1_v1.C_LG_XVIII2933_737849
estExt_Genewise1_v1.C_1710010_746341
150
IMGA|AC141113_9.2
jgi|Phypa1_1|161443|estExt_fgenesh1_pg.C_330029
jgi|Phypa1_1|56303|fgenesh1_pm.scaffold_33000008
GRMZM2G115176
GRMZM2G115925
LOC_Os02g01250
LOC_Os03g13760
jgi|Sorbi1|5049835|Sb01g041430
Glyma05g31950
Glyma08g15260
chr3.CM0164.220.nd
AT1G20580
GSVIVP00002878001
eugene3.00020086_550771
estExt_Genewise1_v1.C_LG_V2071_715635
171
IMGA|AC142224_16.2
jgi|Phypa1_1|192923|estExt_gwp_gw1.C_1900008
jgi|Phypa1_1|206902|estExt_Genewise1.C_350284
GRMZM2G016097
GRMZM2G106105
LOC_Os08g08040
jgi|Sorbi1|4762473|estExt_Genewise1.C_chr_67944
Glyma05g28190
Glyma08g11160
chr3.LjT46L11.10.nc
AT2G03870
GSVIVP00008837001
estExt_Genewise1_v1.C_LG_I1870_706444
estExt_Genewise1_v1.C_LG_IX3230_722752
190
IMGA|AC135801_11.2
jgi|Phypa1_1|144795|e_gw1.219.49.1
jgi|Phypa1_1|208472|estExt_Genewise1.C_460191
GRMZM2G058252
GRMZM2G168252
LOC_Os11g43620
jgi|Sorbi1|4798049|e_gw1.3.1801.1
jgi|Sorbi1|4882292|estExt_Genewise1Plus.C_chr_41141
Glyma17g07060
Glyma20g21250
chr5.CM0852.120.nd
AT4G30220
eugene3.00180816_578592
198
IMGA|AC156828_37.2
IMGA|AC174289_29.2
jgi|Phypa1_1|137954|e_gw1.142.63.1
jgi|Phypa1_1|162711|estExt_fgenesh1_pg.C_460132
GRMZM2G092429
LOC_Os04g36810
jgi|Sorbi1|4760968|estExt_Genewise1.C_chr_65346
Glyma07g04580
chr6.CM0420.220.nd
AT3G14080
GSVIVP00034053001
estExt_Genewise1_v1.C_1580060_745826
estExt_fgenesh4_pm.C_LG_III0051_830650
199
IMGA|AC137667_47.2
jgi|Phypa1_1|160036|estExt_fgenesh1_pg.C_170228
jgi|Phypa1_1|218770|estExt_Genewise1.C_1620125
GRMZM2G159675
LOC_Os02g30624
LOC_Os04g31950
jgi|Sorbi1|4809779|e_gw1.4.13539.1
Glyma09g39830
Glyma18g46370
AT2G43810
AT3G59810
estExt_fgenesh4_pm.C_LG_VIII0306_832613
201
IMGA|AC150442_9.2
jgi|Phypa1_1|194529|estExt_gwp_gw1.C_2180063
jgi|Phypa1_1|228019|estExt_Genewise1.C_4750009
GRMZM2G057865
LOC_Os03g29740
jgi|Sorbi1|147386|estExt_fgenesh1_kg.C_chr_10370
jgi|Sorbi1|4876387|estExt_Genewise1Plus.C_chr_210320
Glyma03g35490
Glyma19g38130
AT2G23930
AT3G11500
GSVIVP00021594001
estExt_Genewise1_v1.C_LG_VI0793_717040
estExt_Genewise1_v1.C_LG_XVI2449_735363
236
IMGA|AC139854_38.2
jgi|Phypa1_1|198696|estExt_gwp_gw1.C_3360028
GRMZM2G063322
GRMZM2G092535
LOC_Os08g05850
jgi|Sorbi1|4756401|estExt_Genewise1.C_chr_45872
jgi|Sorbi1|5058410|Sb07g003620
Glyma03g30750
Glyma19g33600
AT1G03330
GSVIVP00023663001
estExt_fgenesh4_kg.C_LG_III0001_813708
estExt_fgenesh4_kg.C_1630004_814695
303
IMGA|AC146567_7.2
jgi|Phypa1_1|176333|estExt_gwp_gw1.C_160192
LOC_Os01g64690
Glyma02g09090
Glyma16g28300
chr1.CM0316.100.nd
AT1G21190
AT1G76860
GSVIVP00031776001
grail3.0003059101_643482
estExt_fgenesh4_pm.C_LG_V0415_831544
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