Help
Feedback
PlantGDB Site Search
Sequence ID
Sequence Keyword
at PlantGDB
Home
Sequence
-Overview -
Download
Search
-Overview-
Select Species...
Arabidopsis thaliana
Brassica napus
Brassica oleracea
Chlamydomonas reinhardtii
Cucumis sativus
Glycine max
Gossypium hirsutum
Hordeum vulgare
Medicago truncatula
Oryza sativa
Physcomitrella patens
Setaria italica
Sorghum bicolor
Triticum aestivum
Vitis vinifera
Zea mays
EST Assemb
-Overview -
Select Species...
Arabidopsis thaliana
Brassica napus
Brassica oleracea
Chlamydomonas reinhardtii
Cucumis sativus
Glycine max
Gossypium hirsutum
Hordeum vulgare
Medicago truncatula
Oryza sativa
Physcomitrella patens
Setaria italica
Sorghum bicolor
Triticum aestivum
Vitis vinifera
Zea mays
GSS Assemb
FTP Server
Genomes
-Overview-
Dicots
AtGDB
- Arabidopsis thaliana
BrGDB
- Brassica rapa
CpGDB
- Carica papaya
CsGDB
- Cucumis sativus
GhGDB
- Gossypium hirsutum
GmGDB
- Glycine max
LjGDB
- Lotus japonicus
MeGDB
- Manihot esculenta
MtGDB
- Medicago truncatula
MgGDB
- Mimulus guttatus
PeGDB
- Prunus persica
PtGDB
- Populus trichocarpa
RcGDB
- Ricinus communis
SlGDB
- Solanum lycopersicum
StGDB
- Solanum tuberosum
VvGDB
- Vitis vinifera
Monocots
BdGDB
- Brachypodium distachyon
HvGDB
- Hordeum vulgare
OsGDB
- Oryza sativa
SbGDB
- Sorghum bicolor
SiGDB
- Setaria italica
TaGDB
- Triticum aestivum
ZmGDB
- Zea mays
Other
CrGDB
- Chlamydomonas reinhardtii
PpGDB
- Physcomitrella patens
SmGDB
- Selaginella moellendorffii
VcGDB
- Volvox carteri
Tools
-Overview-
BioExtract
BLAST
DAS
GeneSeqer
GenomeThreader
MuSeqBox
PatternSearch
ProbeMatch
TE nest
yrGATE
Datasets
- Overview -
Ac/Ds maize
Overview
Browse Insertions
Gene Distance
ASIP
PLEXdb
RescueMu
RFLP/FLIS
SRGD
UniformMu
Outreach
Plant Genome Outreach Portal (PGROP)
Outreach to Native Americans
Help
Help
Community Annotation
Genome Browsers
TableMaker
Tutorials
Annotation Tutorial
Annotation Lessons
GeneSeqer Tutorial
About Us
News
Tour
F.A.Q.
Site Map
Publications
Links
Acknowledgments
Overview
Data & Methods
BLAST
Old Version
Database
Overview
Human
Drosophila
Yeast
small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Arabidopsis thaliana (At)
4.1 Proteins involved in other processe
CIWOG
At
Pp
Zm
Os
Sb
Gm
Mt
Lj
Vv
Pt
53
AT2G46280
AT2G46290
jgi|Phypa1_1|106184|estExt_fgenesh1_pm.C_650013
jgi|Phypa1_1|161649|estExt_fgenesh1_pg.C_340208
jgi|Phypa1_1|178002|estExt_gwp_gw1.C_280017
GRMZM2G028834
GRMZM2G143330
LOC_Os05g16660
LOC_Os08g21660
jgi|Sorbi1|4873317|estExt_Genewise1Plus.C_chr_20665
Glyma01g03610
Glyma09g36870
Glyma12g00510
IMGA|AC124957_30.2
IMGA|AC133862_22.2
LjSGA_025619.1
GSVIVP00030682001
estExt_Genewise1_v1.C_LG_VIII0460_720028
estExt_fgenesh4_pm.C_LG_X0377_833555
58
AT1G24706
jgi|Phypa1_1|130035|e_gw1.80.9.1
GRMZM2G461356
LOC_Os01g68810
jgi|Sorbi1|4754423|estExt_Genewise1.C_chr_310626
jgi|Sorbi1|4781426|e_gw1.1.1119.1
jgi|Sorbi1|4781487|e_gw1.1.1074.1
Glyma05g34330
Glyma08g05320
IMGA|AC141922_24.2
IMGA|AC141922_31.2
IMGA|AC141922_32.2
IMGA|AC142094_1.2
IMGA|AC142094_41.2
IMGA|AC142094_42.2
chr4.CM0042.1620.nc
GSVIVP00003363001
GSVIVP00029432001
GSVIVP00030623001
GSVIVP00030624001
GSVIVP00030625001
gw1.XIX.1514.1_249114
fgenesh4_pm.C_scaffold_87000014_813521
89
AT5G42920
jgi|Phypa1_1|186713|estExt_gwp_gw1.C_970072
GRMZM2G069099
LOC_Os02g52820
jgi|Sorbi1|144786|estExt_fgenesh1_pm.C_chr_40996
Glyma04g04180
Glyma06g04360
IMGA|CU012043_30.2
IMGA|CU012043_7.2
IMGA|CU179697_18.1
LjT07K13.120.nd
GSVIVP00014829001
estExt_fgenesh4_pm.C_400112_836447
126
AT3G57290
jgi|Phypa1_1|104560|estExt_fgenesh1_pm.C_90013
jgi|Phypa1_1|106353|estExt_fgenesh1_pm.C_730006
jgi|Phypa1_1|199296|estExt_gwp_gw1.C_3630017
GRMZM2G038313
GRMZM2G151549
LOC_Os07g07250
LOC_Os07g12110
LOC_Os07g32040
jgi|Sorbi1|4746986|estExt_Genewise1.C_chr_21343
Glyma02g33770
Glyma10g16090
LjSGA_052131.1
GSVIVP00025658001
eugene3.00160374_576239
grail3.0024032201_652677
139
AT5G09860
jgi|Phypa1_1|174480|estExt_gwp_gw1.C_70184
GRMZM2G006673
LOC_Os03g01970
jgi|Sorbi1|4746257|estExt_Genewise1.C_chr_112311
Glyma04g16810
Glyma04g16840
IMGA|CR956631_51.2
LjSGA_022120.1
LjSGA_024315.1
GSVIVP00002011001
GSVIVP00002021001
gw1.I.6978.1_178378
gw1.III.1965.1_414862
187
AT5G08550
jgi|Phypa1_1|213820|estExt_Genewise1.C_930098
GRMZM2G420856
GRMZM2G446648
LOC_Os03g63670
jgi|Sorbi1|4740308|estExt_Genewise1.C_chr_10170
Glyma07g19080
Glyma07g35400
Glyma20g03420
IMGA|CT027663_50.2
GSVIVP00030283001
fgenesh4_pg.C_LG_VI000177_761867
212
AT1G55460
jgi|Phypa1_1|176664|estExt_gwp_gw1.C_180167
AC197118.3_FGP005
GRMZM2G117441
LOC_Os03g37330
jgi|Sorbi1|4755314|estExt_Genewise1.C_chr_40697
jgi|Sorbi1|4877301|estExt_Genewise1Plus.C_chr_30379
Glyma02g45820
Glyma14g02960
IMGA|CU424490_8.1
chr6.CM0037.190.nd
GSVIVP00017659001
eugene3.00101992_567434
estExt_fgenesh4_pm.C_LG_VIII0198_832545
219
AT4G25550
jgi|Phypa1_1|121377|e_gw1.35.320.1
GRMZM2G058966
GRMZM2G074787
LOC_Os04g58640
jgi|Sorbi1|4762881|estExt_Genewise1.C_chr_68638
Glyma20g29700
chr5.CM0148.520.nd
GSVIVP00010497001
GSVIVP00026791001
gw1.XII.876.1_422416
estExt_Genewise1_v1.C_LG_XV3300_734153
331
AT5G51660
jgi|Phypa1_1|57317|fgenesh1_pm.scaffold_61000005
LOC_Os04g18010
jgi|Sorbi1|4760506|estExt_Genewise1.C_chr_61020
Glyma09g28030
Glyma16g32890
LjSGA_049766.1
GSVIVP00038486001
gw1.XII.1275.1_422815
353
AT4G29820
GRMZM2G118104
LOC_Os08g30820
jgi|Sorbi1|5058701|Sb07g019840
Glyma09g07670
CM0601.200.nd
GSVIVP00016513001
estExt_fgenesh4_pg.C_LG_VI0927_819254
Loading Help Page...Thanks for your patience!
Loading Video...Thanks for your patience!
Loading Image...Thanks for your patience!