<h2>SRGD</h2>

Gene Groups

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ATP binding / ATP-dependent helicase/ RNA binding

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

41AT5G26742 jgi|Phypa1_1|113584|e_gw1.7.51.1 jgi|Phypa1_1|125455|e_gw1.54.23.1 jgi|Phypa1_1|30666|gw1.163.50.1 jgi|Phypa1_1|50380|gw1.7.306.1 GRMZM2G163072 GRMZM2G415491 LOC_Os03g61220 jgi|Sorbi1|4774896|e_gw1.1.172.1 Glyma03g38550 Glyma10g28100 Glyma19g41150 Glyma20g22120 IMGA|AC149038_14.2 IMGA|AC166743_6.2 LjB06P23.40.nc chr5.CM0048.280.nc GSVIVP00022481001 jgi|Poptr1_1|267999|gw1.131.1.1 jgi|Poptr1_1|268020|gw1.131.22.1
218AT1G77030 jgi|Phypa1_1|30506|gw1.409.31.1 LOC_Os08g32090 jgi|Sorbi1|5058723|Sb07g020310 Glyma03g00350 Glyma16g34790 IMGA|AC171618_38.2 GSVIVP00014339001 jgi|Poptr1_1|204718|gw1.V.119.1

ATP-dependent RNA helicase

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

14AT2G45810 AT3G61240 AT4G00660 jgi|Phypa1_1|131244|e_gw1.87.104.1 jgi|Phypa1_1|79636|fgenesh1_pg.scaffold_80000086 GRMZM2G086116 GRMZM2G129007 LOC_Os02g42860 LOC_Os04g45040 LOC_Os10g35990 jgi|Sorbi1|4742507|estExt_Genewise1.C_chr_13759 jgi|Sorbi1|4742512|estExt_Genewise1.C_chr_13764 Glyma03g01500 Glyma03g01530 Glyma07g07920 Glyma07g07950 Glyma09g39710 IMGA|AC123899_5.2 IMGA|AC123899_6.2 IMGA|AC123899_9.2 GSVIVP00000382001 GSVIVP00026802001 jgi|Poptr1_1|731050|estExt_Genewise1_v1.C_LG_XIV1157 jgi|Poptr1_1|755273|fgenesh4_pg.C_LG_II001453
99AT5G60990 jgi|Phypa1_1|178010|estExt_gwp_gw1.C_280025 GRMZM2G075027 LOC_Os03g46610 jgi|Sorbi1|5050333|Sb01g049070 Glyma03g01710 IMGA|AC146793_7.2 IMGA|AC174377_7.2 GSVIVP00013119001 jgi|Poptr1_1|218296|gw1.VII.2601.1 jgi|Poptr1_1|832135|estExt_fgenesh4_pm.C_LG_VI0759
294Glyma06g21800 GSVIVP00016255001

ATP-dependent RNA or DNA unwinding

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

239jgi|Phypa1_1|141731|e_gw1.182.41.1 jgi|Phypa1_1|220890|estExt_Genewise1.C_2010071 GRMZM2G319509 LOC_Os02g50560 jgi|Sorbi1|5055589|Sb04g028500 chr2.CM0028.190.nc

DEAD box RNA helicase

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

6AT2G42520 AT3G58510 AT3G58570 jgi|Phypa1_1|107568|estExt_fgenesh1_pm.C_1730006 jgi|Phypa1_1|1580|gw1.243.16.1 jgi|Phypa1_1|168022|estExt_fgenesh1_pg.C_1630086 jgi|Phypa1_1|21374|gw1.48.53.1 GRMZM2G035807 GRMZM2G092327 GRMZM2G403636 LOC_Os03g59050 LOC_Os07g10250 LOC_Os11g38670 jgi|Sorbi1|4791178|e_gw1.2.1995.1 jgi|Sorbi1|4867397|estExt_Genewise1Plus.C_chr_10926 Glyma02g26630 Glyma05g28770 Glyma08g11920 Glyma09g15940 Glyma11g36440 Glyma13g23720 Glyma17g12460 Glyma18g00370 IMGA|AC146760_21.2 IMGA|AC157983_23.2 IMGA|AC166093_19.2 IMGA|AC202469_2.1 IMGA|AC202570_8.1 GSVIVP00003716001 GSVIVP00016872001 GSVIVP00024762001 GSVIVP00025435001 jgi|Poptr1_1|177956|gw1.I.6556.1 jgi|Poptr1_1|576413|eugene3.00160548 jgi|Poptr1_1|712751|estExt_Genewise1_v1.C_LG_III2630 jgi|Poptr1_1|717593|estExt_Genewise1_v1.C_LG_VI2083
163AT3G09720 jgi|Phypa1_1|41894|gw1.32.167.1 GRMZM2G083580 LOC_Os07g45360 jgi|Sorbi1|5000947|estExt_fgenesh1_pg.C_chr_23875 Glyma03g33590 Glyma19g36300 IMGA|AC124963_17.2 chr1.CM0033.480.nc GSVIVP00023153001 jgi|Poptr1_1|581044|eugene3.01250042
200AT3G46960 jgi|Phypa1_1|227295|estExt_Genewise1.C_4060018 GRMZM2G024882 LOC_Os02g06500 jgi|Sorbi1|4812333|e_gw1.4.871.1 Glyma18g07510 LjB08M07.30.nc LjB08M07.50.nc GSVIVP00024171001 jgi|Poptr1_1|723138|estExt_Genewise1_v1.C_LG_IX3922
202AT3G02065 jgi|Phypa1_1|163933|estExt_fgenesh1_pg.C_620070 GRMZM2G085587 LOC_Os02g10770 jgi|Sorbi1|5037772|Sb04g006980 Glyma02g07540 Glyma16g26580
221AT1G16280 jgi|Phypa1_1|220567|estExt_Genewise1.C_1970079 LOC_Os07g43980 jgi|Sorbi1|4791650|e_gw1.2.20252.1 Glyma08g17620 Glyma15g41500 IMGA|AC138448_23.2 GSVIVP00002064001 jgi|Poptr1_1|420684|gw1.VIII.2112.1
224jgi|Phypa1_1|135358|e_gw1.119.19.1 jgi|Phypa1_1|135382|e_gw1.119.18.1 jgi|Phypa1_1|157210|e_gw1.728.2.1 jgi|Phypa1_1|173651|estExt_fgenesh1_pg.C_5270001 Glyma11g31380 GSVIVP00023931001 jgi|Poptr1_1|729255|estExt_Genewise1_v1.C_LG_XIII0287 jgi|Poptr1_1|826310|estExt_fgenesh4_pg.C_LG_XIX0940
299GRMZM2G357923 IMGA|AC152158_16.2 GSVIVP00028045001
308GRMZM2G091652 LOC_Os06g40020 jgi|Sorbi1|5061888|Sb10g023440
311GRMZM2G028366 LOC_Os02g12840 jgi|Sorbi1|4814184|e_gw1.4.2415.1
380AT5G65900 GSVIVP00017610001

Heterogeneour nuclear ribonucleoprotein 27C

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

357GSVIVP00037180001 jgi|Poptr1_1|664446|grail3.0061020502

KH domain containing protein

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

179GRMZM2G120973 GRMZM2G131839 LOC_Os10g35220 GSVIVP00038217001 jgi|Poptr1_1|580795|eugene3.01230085
204AT1G51580 LOC_Os09g32300 Glyma04g09300 Glyma06g09460 Glyma08g23710 IMGA|AC135800_18.2 IMGA|AC157757_20.2 chr1.CM0233.590.nc jgi|Poptr1_1|228446|gw1.X.3143.1 jgi|Poptr1_1|551726|eugene3.00021041
225Glyma03g31670 Glyma10g03910 Glyma19g34470 LjSGA_010787.1 GSVIVP00023873001
249GRMZM2G085582 LOC_Os05g40290 jgi|Sorbi1|4895220|estExt_Genewise1Plus.C_chr_96735
258GRMZM2G130095 LOC_Os12g40560 jgi|Sorbi1|4844900|e_gw1.8.14277.1 chr1.CM0375.250.nd
267AC218972.3_FGP007 GRMZM2G093006 LOC_Os01g60260 jgi|Sorbi1|4880452|estExt_Genewise1Plus.C_chr_39554
278AT5G46190 Glyma05g27340 Glyma08g10330 jgi|Poptr1_1|197384|gw1.IV.2473.1
288Glyma11g31530 Glyma18g05680 IMGA|AC147002_39.2
293GSVIVP00036937001 jgi|Poptr1_1|226375|gw1.X.1072.1 jgi|Poptr1_1|419577|gw1.VIII.1005.1
305GRMZM2G108677 LOC_Os03g60110 jgi|Sorbi1|4867266|estExt_Genewise1Plus.C_chr_10739
319AT1G14170
323jgi|Poptr1_1|774084|fgenesh4_pg.C_LG_XIII000538 jgi|Poptr1_1|809716|fgenesh4_pm.C_LG_XIX000281
356Glyma02g15850
367GRMZM2G162992
372GRMZM2G075039 jgi|Sorbi1|5029184|Sb01g022040

LSM domain containing protein

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

307GRMZM2G092429 LOC_Os04g36810 jgi|Sorbi1|4760968|estExt_Genewise1.C_chr_65346

mRNA 3-UTR binding protein

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

178jgi|Phypa1_1|130845|e_gw1.84.182.1 jgi|Phypa1_1|13586|gw1.84.45.1 GRMZM2G166355 LOC_Os08g40880 jgi|Sorbi1|5059068|Sb07g027050 Glyma06g08200 IMGA|CT868696_6.2 chr1.LjT36G06.30.nc GSVIVP00032377001 jgi|Poptr1_1|583200|eugene3.01470085 jgi|Poptr1_1|837528|estExt_fgenesh4_pm.C_1930016

PEP (PEPPER); RNA binding / nucleic acid binding

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

157AT4G26000 GRMZM2G119146 GRMZM2G180909 LOC_Os10g41440 jgi|Sorbi1|5049049|Sb01g028800 Glyma09g06750 Glyma13g00510 Glyma17g06640 IMGA|AC151665_25.2 chr4.CM0244.150.nd GSVIVP00006796001 jgi|Poptr1_1|277196|gw1.193.46.1

PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

59AT3G22310 AT3G22330 GRMZM2G107984 GRMZM2G136644 LOC_Os07g05050 LOC_Os12g41715 jgi|Sorbi1|5050535|Sb02g002790 jgi|Sorbi1|5059806|Sb08g021180 Glyma02g45030 Glyma08g41510 Glyma14g03760 Glyma18g14670 IMGA|CT485797_31.2 LjB12O06.130.nc GSVIVP00018949001 jgi|Poptr1_1|255017|gw1.XVI.956.1 jgi|Poptr1_1|818968|estExt_fgenesh4_pg.C_LG_VI0209

Polyadenylate-binding protein

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

274GRMZM2G055018 GRMZM2G310362 LOC_Os06g38980 jgi|Sorbi1|5061860|Sb10g022900

PRH75; ATP-depedent helicase/ DEAD/H-box RNA helicase binding

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

141AT5G62190 jgi|Phypa1_1|127777|e_gw1.67.40.1 GRMZM2G149520 GRMZM2G164956 LOC_Os09g34910 jgi|Sorbi1|147838|estExt_fgenesh1_kg.C_chr_20232 Glyma10g38680 Glyma20g29060 IMGA|AC149304_13.2 GSVIVP00038510001 jgi|Poptr1_1|806661|fgenesh4_pm.C_LG_XII000481 jgi|Poptr1_1|824889|estExt_fgenesh4_pg.C_LG_XV1043

RNA helicase

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

206AT1G31970 jgi|Phypa1_1|205380|estExt_Genewise1.C_270066 GRMZM2G076484 LOC_Os07g20580 jgi|Sorbi1|4999550|estExt_fgenesh1_pg.C_chr_21093 Glyma01g01390 Glyma09g34390 IMGA|CU459038_20.1 GSVIVP00003606001 jgi|Poptr1_1|712352|estExt_Genewise1_v1.C_LG_III1770
290Glyma06g22000 IMGA|CU182773_12.1 jgi|Poptr1_1|783071|fgenesh4_pg.C_scaffold_82000026

RNA processing and the regulation of transcription

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

247jgi|Phypa1_1|231029|fgenesh2_pg.scaffold_119000024 Glyma05g03110 Glyma17g13750 IMGA|AC135505_41.2
322jgi|Poptr1_1|808062|fgenesh4_pm.C_LG_XV000273 jgi|Poptr1_1|834350|estExt_fgenesh4_pm.C_LG_XII0344

RNA binding protein

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

286IMGA|AC148482_23.2 IMGA|AC148526_13.2 chr6.LjT16B20.40.nc
325jgi|Poptr1_1|254726|gw1.XVI.665.1 jgi|Poptr1_1|818953|estExt_fgenesh4_pg.C_LG_VI0143
310GRMZM2G043150 jgi|Sorbi1|5059239|Sb08g001290

RNA-binding protein AKIP1-like

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

359GSVIVP00019425001 jgi|Poptr1_1|558592|eugene3.00050207
360GSVIVP00017425001 jgi|Poptr1_1|751987|fgenesh4_pg.C_LG_I001590

RNA-binding protein cp29

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

262AT3G55920 Glyma11g35280 Glyma18g03120 GSVIVP00029291001 jgi|Poptr1_1|659517|grail3.0022013501

RRM containing protein

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

46AT1G20880 AT1G76460 GRMZM2G042195 GRMZM2G092493 LOC_Os02g48340 LOC_Os06g41790 jgi|Sorbi1|5055689|Sb04g030020 jgi|Sorbi1|5061944|Sb10g024450 Glyma04g01590 Glyma06g01670 IMGA|AC131026_44.2 chr1.CM0150.310.nc GSVIVP00002935001 jgi|Poptr1_1|550726|eugene3.00020041 jgi|Poptr1_1|652263|grail3.0002083101
223Glyma02g15810 Glyma07g32660 LjT18N19.10.nd jgi|Poptr1_1|235363|gw1.XI.3343.1 jgi|Poptr1_1|713853|estExt_Genewise1_v1.C_LG_IV2768
250GRMZM2G052569 LOC_Os04g54440 jgi|Sorbi1|5057963|Sb06g030090
259GRMZM2G127510 GRMZM2G169615 LOC_Os07g33330
264AT2G37220 GRMZM2G042683 LOC_Os03g25960 jgi|Sorbi1|4870636|estExt_Genewise1Plus.C_chr_18851 GSVIVP00023204001
273GRMZM2G069678 LOC_Os04g37690 jgi|Sorbi1|4756660|estExt_Genewise1.C_chr_46466 jgi|Sorbi1|4825687|e_gw1.6.13460.1
276GRMZM2G012628 LOC_Os04g53440 jgi|Sorbi1|4833149|e_gw1.6.16770.1
301GRMZM2G158835 LOC_Os07g43810 jgi|Sorbi1|147976|estExt_fgenesh1_kg.C_chr_20370
302GRMZM2G158462 LOC_Os08g44290 jgi|Sorbi1|4891353|estExt_Genewise1Plus.C_chr_77129
303GRMZM2G153526 GSVIVP00020992001
306GRMZM2G107745 LOC_Os03g59710 jgi|Sorbi1|5047868|Sb01g003790
326jgi|Poptr1_1|243429|gw1.XIV.172.1 jgi|Poptr1_1|412701|gw1.II.4036.1
332LOC_Os07g46820
335LOC_Os04g02870
339LOC_Os01g64770
355Glyma03g01920
358LOC_Os07g08320 GSVIVP00027062001
364GRMZM2G180639
369GRMZM2G094039 GRMZM2G366935
370GRMZM2G094039
371GRMZM2G079974 GRMZM2G127510
375GRMZM2G056145 jgi|Sorbi1|5052840|Sb03g009130
393AT1G54080
376GRMZM2G052926 GRMZM2G070113
378GRMZM2G037226

Splicing factor

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

284LOC_Os01g06290
321jgi|Sorbi1|3999143|gw1.6.1450.1 jgi|Sorbi1|4988617|fgenesh1_pg.C_chr_8000390
336LOC_Os03g49430 jgi|Sorbi1|4741749|estExt_Genewise1.C_chr_12224

Splicing factor 1 (SF1) K homology RNA-binding domain (KH)

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

89AT4G26480 AT5G56140 jgi|Phypa1_1|108452|estExt_fgenesh1_pm.C_2690009 jgi|Phypa1_1|183867|estExt_gwp_gw1.C_680211 jgi|Phypa1_1|222121|estExt_Genewise1.C_2260018 GRMZM2G029029 GRMZM2G092182 LOC_Os02g49080 jgi|Sorbi1|4757394|estExt_Genewise1.C_chr_47755 Glyma04g12370 Glyma06g48070 IMGA|CT963080_2.2 chr3.CM0047.410.nc GSVIVP00033451001 jgi|Poptr1_1|642696|grail3.0051017601 jgi|Poptr1_1|672144|grail3.0140002001
256Glyma02g40440 Glyma14g38730 IMGA|AC149600_29.2 IMGA|CU459032_31.1

Splicing factor U2AF

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

177GRMZM2G177229 LOC_Os09g31482 jgi|Sorbi1|5000148|estExt_fgenesh1_pg.C_chr_22528

Splicing factor U2af 38 kDa subunit

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

292Glyma03g34840 Glyma19g37530 chr1.CM0378.200.nd

Splicing factor U2af large subunit B

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

324jgi|Poptr1_1|647996|grail3.0046020601 jgi|Poptr1_1|670968|grail3.0124001701

U2 small nuclear ribonucleoprotein A

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

337LOC_Os02g13990

WD domain pre-mRNA prcessing

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

289LOC_Os05g16660 LOC_Os08g21660 Glyma09g36870

WD40 domain, pre-mRNA processing

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

354Glyma06g04670

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