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PpGDB encompasses primary sequence data obtained from GenBank, including the most current gss and BAC assembly and annotation, EST and cDNA sequences, and protein sequences derived from the annotated genes. Physcomitrella patens genome assemblies refer to the pseudo-chromosome tiling of individual genomic sequence fragments obtained from the listed assembly sources. The mapping of cDNA and EST sequences onto the genome as well as interpretations of the overall data are based on our own spliced alignment results.

The moss genome assembly is still being refined and completed. PpGDB attempts to remain synchronized with the most recent release of the genome assembly and annotations.

For descriptions of the available downloads, go here.

NameLast modified dateFile Size
ATpep.bz2Feb 18 14:037.64 MB
OSpep.bz2Feb 18 14:0313.5 MB
PPGDB163.sqlMar 4 11:43930.96 MB
PPbac163.bz2Feb 18 14:02121.13 MB
PPcdna163.bz2Feb 18 14:10222.11 KB
PPest163.bz2Feb 18 14:1057.04 MB
PPput157.bz2Feb 18 14:028.07 MB

© 2006 Shannon D. Schlueter