Physcomitrella patens genome (scaffolds) Phypa1.1/1.6/PpGDB183 (12 May 2011)
Ordered series of contigs with or without gaps.
Alignments to Genome
PpGDB displays high quality spliced alignments for EST
, related species protein
, and Probe
. The current database version is PpGDB183
. For more information see Data & Methods
Sequence analysis tools accessed from the Genome Context View
menu use the current genomic region as input. Or, to access the same tools without a genomic context, use PpGDB left menubar Tools links.
More about tools...
Help annotate the Physcomitrella patens
genome using our yrGATE gene structure annotation tool (see Overview
), aided by GAEVAL tables
that flag problematic gene models.
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Custom Track Display
Distributed Annotation Service (DAS) (see Overview
) is available for displaying remotely served genome alignments at PpGDB, as well as for displaying selected PpGDB tracks on a different genome browser (e.g. Ensembl, GBrowse). How to use DAS...
Additional custom track display features are under development.
Annotated Protein Alignments
Genome browser video demo:
For help pages and tutorials focusing on genome browser features and gene annotation, see side bar.