Arabidopsis thaliana phosphoinositide-specific phospholipase C gene family
Tasma, I.M., Brendel, V., Whitham, S.A., and Bhattacharyya, M.K. (2008)
Expression and evolution of the phosphoinositide-specific phospholipase C gene family in Arabidopsis thaliana.
Plant Physiology and Biochemistry, to appear.
The tablebelow shows the map locations of the nine Arabidopsis PLC genes.
The coordinates of the longest identified mRNAs are given relative to Release 7.0 of the
Arabidopsis genome. +/- indicate the coding strand.
Click on the gene name (e.g., AtPLC1)
in the table to view cDNA and EST evidence for the gene.
Click on the AGI identifier (e.g., At5g58670)
in the table to view gene structure and GenBank annotation for the gene.
The promoter regions were obtained from the ATcisDB resource
(Molina, C. and Grotewold, E., 2005, BMC Genomics 6, 25).
The links in the Chromosomal Duplication Blocks column refer to the Arabidopsis Paralogons
site by Blanc, G., Hokamp, K., and Wolfe, K.H. (2003) Genome Res. 13, 137-144.
Supporting Data
Rice PLC genes:
OsPLCa = Os03g18000+Os03g18010 (chr. 3),
OsPLCb = Os05g03610 (chr. 5),
OsPLCc = Os07g49330 (chr. 7),
OsPLCd = Os12g37560 (chr. 12)
PLC protein sequences (FASTA format):
Arabidopsis, rice, and human
All plants and human
All plants and human, matching region only
PLC protein sequence multiple sequence alignment (produced using
ClustalX):
Arabidopsis, rice, and human
All plants and human
All plants and human, matching region only
PLC protein sequence gamma distances (produced using
MEGA 2.1):
Arabidopsis, rice, and human
All plants and human
All plants and human, matching region only
PLC protein sequence NJ-phylogenetic tree (produced using
MEGA 2.1):
Arabidopsis, rice, and human
All plants and human
All plants and human, matching region only
© 2006 Shannon D. Schlueter