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ASIP Selection



       


Current Data in ASIP

Type Species Data Set from common or individual alignments

Data jointly contributed by Medicago Genome Sequencing project and PlantGDB

June 30, 2007

 Medicago
Mt1.0
Non-redundant genes		 Alternative Donor site;     GeneSeqer     GMAP
Alternative Acceptor site;     GeneSeqer     GMAP
Alternative Position (both site);     GeneSeqer     GMAP
Exon Skipping;     GeneSeqer     GMAP
Intron Retention;     GeneSeqer     GMAP
Lotus
Phase 3 BACs		 Alternative Donor site;     GeneSeqer     GMAP
Alternative Acceptor site;     GeneSeqer     GMAP
Alternative Position (both site);     GeneSeqer     GMAP
Exon Skipping;     GeneSeqer     GMAP
Intron Retention;     GeneSeqer     GMAP
Arabidopsis
TAIR-V6		 Alternative Donor site;     GeneSeqer     GMAP
Alternative Acceptor site;     GeneSeqer     GMAP
Alternative Position (both site);     GeneSeqer     GMAP
Exon Skipping;     GeneSeqer     GMAP
Intron Retention;     GeneSeqer     GMAP
Rice
TIGR-V4
Japonica subspecies only		 Alternative Donor site;     GeneSeqer     GMAP
Alternative Acceptor site;     GeneSeqer     GMAP
Alternative Position (both site);     GeneSeqer     GMAP
Exon Skipping;     GeneSeqer     GMAP
Intron Retention;     GeneSeqer     GMAP
Medicago & Lotus
Conserved AS events		 Alternative Donor site;     GeneSeqer     GMAP
Alternative Acceptor site;     GeneSeqer     GMAP
Alternative Position (both site);     GeneSeqer     GMAP
Exon Skipping;     GeneSeqer     GMAP
Intron Retention;     GeneSeqer     GMAP
Medicago & Legumes
Cross species EST identified AS events		 Alternative Donor site;     Lotus     Soybean     Others
Alternative Acceptor site;     Lotus     Soybean     Others
Alternative Position;     Lotus     Soybean     Others
Exon Skipping;     Lotus     Soybean     Others
Intron Retention;     Lotus     Soybean     Others

Sept 1, 2006		 Arabidopsis
TAIR-V6
GenBank release 152		 Alternative Donor site
Alternative Acceptor site
Alternative Position (both site)
Exon Skipping
Intron Retention
Rice
TIGR-V4
GenBank release 151		 Alternative Donor site
Alternative Acceptor site
Alternative Position (both site)
Exon Skipping
Intron Retention

For old data described in Wang and Brendel, PNAS, 2006, please click here.