Alternative splicing visualization tool...
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  • ASIP Publication: BMC plant biology 2008 -Cross-Species EST Alignments Reveal Novel and Conserved Alternative Splicing Events in Legumes


  • ASIP updated @ 6/30/2007; Legumes come to ASIP, Thanks to Medicago Genome Sequencing project.

    -- Medicago and Lotus data identified from same-species and cross-species EST/cDNAs.
    -- New Arabidopsis and rice data set.
    -- Common alignments from GeneSeqer and GMAP programs.
    -- Easy comparison between different versions of databases.
    -- Highlighted AS events in GeneSeqer text alignment.

  • EnterDB

    Enter database -Browse the alternative splicing events in Arabidopsis and rice. Data from other species will come soon.


  • Tools

    Tools -search against intron, exon and junction sequences in Arabidopsis and rice.


  • Methods

    Methods -Brief description of pipeline.


  • Download

    Download -Access to all raw data, including Genome sequences, EST/cDNA sequences, Raw alignment, and MySQL database.


  • Publications

    PNAS 2006 -Genome-wide comparative analysis of alternative transcripts in plants.

    • BMC plant biology 2008 -Cross-Species EST Alignments Reveal Novel and Conserved Alternative Splicing Events in Legumes

  • Conference talk

    - ISMB2005 -session: gene regulation and microRNA
    See Publications for abstract and links