|
 |
Alternative splicing visualization tool...
|
ASIP Publication: BMC plant biology 2008 -Cross-Species EST Alignments Reveal Novel and Conserved Alternative Splicing Events in Legumes
- ASIP updated @ 6/30/2007; Legumes come to ASIP, Thanks to Medicago Genome Sequencing project.
-- Medicago and Lotus data identified from same-species and cross-species EST/cDNAs.
-- New Arabidopsis and rice data set.
-- Common alignments from GeneSeqer and GMAP programs.
-- Easy comparison between different versions of databases.
-- Highlighted AS events in GeneSeqer text alignment.
- EnterDB
Enter database -Browse the alternative splicing events in Arabidopsis and rice. Data from other species will come soon.
- Tools
Tools -search against intron, exon and junction sequences in Arabidopsis and rice.
- Methods
Methods -Brief description of pipeline.
- Download
Download -Access to all raw data, including Genome sequences, EST/cDNA sequences, Raw alignment, and MySQL database.
- Publications
PNAS 2006 -Genome-wide comparative analysis of alternative transcripts in plants.
BMC plant biology 2008 -Cross-Species EST Alignments Reveal Novel and Conserved Alternative Splicing Events in Legumes
- Conference talk
- ISMB2005 -session: gene regulation and microRNA
See Publications for abstract and links
|