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Alternative splicing visualization tool...
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ASIP
Publication: BMC plant
biology 2008 - Cross-Species EST Alignments Reveal
Novel and Conserved Alternative Splicing Events in
Legumes
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ASIP updated @ 6/30/2007;
Legumes come to ASIP, thanks to the Medicago Genome Sequencing Project.
- Medicago and Lotus data identified from same-species and cross-species EST/cDNAs.
- New Arabidopsis and rice data set.
- Common alignments from GeneSeqer and GMAP programs.
- Easy comparison between different versions of databases.
- Highlighted AS events in GeneSeqer text alignment.
- Enter database - Browse the alternative splicing events in Arabidopsis and rice. Data from other species will come soon.
- Tools - Search against intron, exon and junction sequences in Arabidopsis and rice.
- Methods - Brief description of pipeline.
- Download - Access all raw data, including Genome sequences, EST/cDNA sequences, Raw alignment, and MySQL database.
- Publications
- PNAS 2006 - Genome-wide comparative analysis of alternative transcripts in plants.
- BMC plant biology 2008 -Cross-Species EST Alignments Reveal Novel and Conserved Alternative Splicing Events in Legumes
- Conference Talk - ISMB2005 - Session: Gene Regulation and MicroRNA
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